Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08685 and CA264_08690 overlap by 1 nucleotides CA264_08690 and CA264_08695 are separated by 144 nucleotides
CA264_08685: CA264_08685 - class I and II aminotransferase, at 2,015,701 to 2,016,789
_08685
CA264_08690: CA264_08690 - dipeptide epimerase, at 2,016,789 to 2,017,802
_08690
CA264_08695: CA264_08695 - peptidase S13, at 2,017,947 to 2,019,260
_08695
Position (kb)
2016
2017
2018 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2015.879 kb on + strand, within CA264_08685 at 2015.880 kb on - strand, within CA264_08685 at 2015.889 kb on + strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2016.014 kb on + strand, within CA264_08685 at 2016.026 kb on + strand, within CA264_08685 at 2016.100 kb on + strand, within CA264_08685 at 2016.118 kb on + strand, within CA264_08685 at 2016.154 kb on + strand, within CA264_08685 at 2016.169 kb on - strand, within CA264_08685 at 2016.169 kb on - strand, within CA264_08685 at 2016.171 kb on - strand, within CA264_08685 at 2016.188 kb on + strand, within CA264_08685 at 2016.189 kb on - strand, within CA264_08685 at 2016.190 kb on + strand, within CA264_08685 at 2016.190 kb on + strand, within CA264_08685 at 2016.192 kb on + strand, within CA264_08685 at 2016.192 kb on + strand, within CA264_08685 at 2016.244 kb on + strand, within CA264_08685 at 2016.245 kb on - strand, within CA264_08685 at 2016.250 kb on - strand, within CA264_08685 at 2016.294 kb on - strand, within CA264_08685 at 2016.468 kb on - strand, within CA264_08685 at 2016.629 kb on + strand, within CA264_08685 at 2016.629 kb on + strand, within CA264_08685 at 2016.630 kb on - strand, within CA264_08685 at 2016.630 kb on - strand, within CA264_08685 at 2016.774 kb on - strand at 2016.850 kb on - strand at 2016.850 kb on - strand at 2016.908 kb on - strand, within CA264_08690 at 2016.995 kb on + strand, within CA264_08690 at 2016.996 kb on - strand, within CA264_08690 at 2017.007 kb on + strand, within CA264_08690 at 2017.106 kb on + strand, within CA264_08690 at 2017.148 kb on - strand, within CA264_08690 at 2017.197 kb on - strand, within CA264_08690 at 2017.292 kb on + strand, within CA264_08690 at 2017.292 kb on + strand, within CA264_08690 at 2017.313 kb on + strand, within CA264_08690 at 2017.392 kb on - strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.433 kb on + strand, within CA264_08690 at 2017.434 kb on - strand, within CA264_08690 at 2017.434 kb on - strand, within CA264_08690 at 2017.434 kb on - strand, within CA264_08690 at 2017.507 kb on - strand, within CA264_08690 at 2017.542 kb on + strand, within CA264_08690 at 2017.542 kb on + strand, within CA264_08690 at 2017.543 kb on - strand, within CA264_08690 at 2017.543 kb on - strand, within CA264_08690 at 2017.658 kb on - strand, within CA264_08690 at 2017.755 kb on - strand at 2017.755 kb on - strand at 2017.760 kb on + strand at 2017.761 kb on - strand at 2017.761 kb on - strand at 2017.810 kb on + strand at 2017.810 kb on + strand at 2017.810 kb on + strand at 2017.811 kb on - strand at 2017.817 kb on - strand at 2017.829 kb on - strand at 2017.837 kb on - strand at 2017.837 kb on - strand at 2017.842 kb on - strand at 2017.842 kb on - strand at 2017.842 kb on - strand at 2017.859 kb on + strand at 2017.860 kb on - strand at 2017.929 kb on - strand at 2017.930 kb on + strand at 2017.943 kb on + strand at 2017.943 kb on + strand at 2017.943 kb on + strand at 2017.943 kb on + strand at 2017.944 kb on - strand at 2017.944 kb on - strand at 2017.949 kb on - strand at 2017.974 kb on - strand at 2018.017 kb on + strand at 2018.017 kb on + strand at 2018.018 kb on - strand at 2018.018 kb on - strand at 2018.024 kb on + strand at 2018.024 kb on + strand at 2018.071 kb on + strand at 2018.140 kb on + strand, within CA264_08695 at 2018.141 kb on - strand, within CA264_08695 at 2018.157 kb on - strand, within CA264_08695 at 2018.335 kb on + strand, within CA264_08695 at 2018.336 kb on - strand, within CA264_08695 at 2018.352 kb on + strand, within CA264_08695 at 2018.535 kb on + strand, within CA264_08695 at 2018.564 kb on + strand, within CA264_08695 at 2018.564 kb on + strand, within CA264_08695 at 2018.565 kb on - strand, within CA264_08695 at 2018.615 kb on + strand, within CA264_08695 at 2018.615 kb on + strand, within CA264_08695 at 2018.616 kb on - strand, within CA264_08695 at 2018.624 kb on + strand, within CA264_08695 at 2018.624 kb on + strand, within CA264_08695 at 2018.682 kb on + strand, within CA264_08695 at 2018.794 kb on + strand, within CA264_08695 at 2018.795 kb on - strand, within CA264_08695 at 2018.797 kb on + strand, within CA264_08695 at 2018.797 kb on + strand, within CA264_08695 at 2018.798 kb on - strand, within CA264_08695
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 2,015,879 + CA264_08685 0.16 -0.1 2,015,880 - CA264_08685 0.16 +0.5 2,015,889 + CA264_08685 0.17 -0.0 2,015,962 - CA264_08685 0.24 -0.9 2,015,962 - CA264_08685 0.24 -0.2 2,015,962 - CA264_08685 0.24 +0.9 2,016,014 + CA264_08685 0.29 -0.1 2,016,026 + CA264_08685 0.30 -0.3 2,016,100 + CA264_08685 0.37 -2.0 2,016,118 + CA264_08685 0.38 +0.1 2,016,154 + CA264_08685 0.42 +1.0 2,016,169 - CA264_08685 0.43 +0.7 2,016,169 - CA264_08685 0.43 -0.8 2,016,171 - CA264_08685 0.43 -1.8 2,016,188 + CA264_08685 0.45 +0.8 2,016,189 - CA264_08685 0.45 -0.2 2,016,190 + CA264_08685 0.45 +0.6 2,016,190 + CA264_08685 0.45 -0.1 2,016,192 + CA264_08685 0.45 -0.5 2,016,192 + CA264_08685 0.45 -0.2 2,016,244 + CA264_08685 0.50 -0.1 2,016,245 - CA264_08685 0.50 +0.4 2,016,250 - CA264_08685 0.50 +1.6 2,016,294 - CA264_08685 0.54 -0.7 2,016,468 - CA264_08685 0.70 +0.0 2,016,629 + CA264_08685 0.85 +0.5 2,016,629 + CA264_08685 0.85 -0.1 2,016,630 - CA264_08685 0.85 -0.7 2,016,630 - CA264_08685 0.85 -1.0 2,016,774 - +0.0 2,016,850 - +1.0 2,016,850 - +1.1 2,016,908 - CA264_08690 0.12 -0.2 2,016,995 + CA264_08690 0.20 +0.1 2,016,996 - CA264_08690 0.20 +0.8 2,017,007 + CA264_08690 0.21 -0.1 2,017,106 + CA264_08690 0.31 -0.3 2,017,148 - CA264_08690 0.35 +0.1 2,017,197 - CA264_08690 0.40 -0.8 2,017,292 + CA264_08690 0.50 -0.4 2,017,292 + CA264_08690 0.50 +0.2 2,017,313 + CA264_08690 0.52 +0.5 2,017,392 - CA264_08690 0.59 +0.8 2,017,433 + CA264_08690 0.64 -0.7 2,017,433 + CA264_08690 0.64 +0.4 2,017,433 + CA264_08690 0.64 -0.1 2,017,433 + CA264_08690 0.64 -0.7 2,017,433 + CA264_08690 0.64 -1.3 2,017,434 - CA264_08690 0.64 -0.1 2,017,434 - CA264_08690 0.64 +0.9 2,017,434 - CA264_08690 0.64 -0.1 2,017,507 - CA264_08690 0.71 +0.2 2,017,542 + CA264_08690 0.74 +0.1 2,017,542 + CA264_08690 0.74 +0.2 2,017,543 - CA264_08690 0.74 +0.3 2,017,543 - CA264_08690 0.74 +0.3 2,017,658 - CA264_08690 0.86 +0.3 2,017,755 - -0.3 2,017,755 - -0.1 2,017,760 + +0.3 2,017,761 - -0.5 2,017,761 - +0.7 2,017,810 + +0.0 2,017,810 + -0.5 2,017,810 + +0.7 2,017,811 - +0.4 2,017,817 - +0.3 2,017,829 - -0.8 2,017,837 - -3.5 2,017,837 - -1.3 2,017,842 - -0.8 2,017,842 - -1.7 2,017,842 - -1.8 2,017,859 + -1.5 2,017,860 - -2.2 2,017,929 - -0.2 2,017,930 + +0.0 2,017,943 + -1.3 2,017,943 + -0.3 2,017,943 + +0.4 2,017,943 + -1.0 2,017,944 - -2.5 2,017,944 - -3.2 2,017,949 - -2.7 2,017,974 - -3.6 2,018,017 + -2.2 2,018,017 + -1.0 2,018,018 - -1.4 2,018,018 - -2.0 2,018,024 + -1.1 2,018,024 + -2.6 2,018,071 + -2.0 2,018,140 + CA264_08695 0.15 -0.8 2,018,141 - CA264_08695 0.15 -0.3 2,018,157 - CA264_08695 0.16 -3.7 2,018,335 + CA264_08695 0.30 -1.5 2,018,336 - CA264_08695 0.30 -3.1 2,018,352 + CA264_08695 0.31 -2.3 2,018,535 + CA264_08695 0.45 -1.6 2,018,564 + CA264_08695 0.47 -3.8 2,018,564 + CA264_08695 0.47 -0.7 2,018,565 - CA264_08695 0.47 -2.9 2,018,615 + CA264_08695 0.51 -1.8 2,018,615 + CA264_08695 0.51 -1.7 2,018,616 - CA264_08695 0.51 -1.9 2,018,624 + CA264_08695 0.52 -0.3 2,018,624 + CA264_08695 0.52 +0.6 2,018,682 + CA264_08695 0.56 -1.5 2,018,794 + CA264_08695 0.64 -1.0 2,018,795 - CA264_08695 0.65 -3.2 2,018,797 + CA264_08695 0.65 +0.4 2,018,797 + CA264_08695 0.65 -0.3 2,018,798 - CA264_08695 0.65 -4.5
Or see this region's nucleotide sequence