Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08030

Experiment: m.b. Ceftazidime 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08025 and CA264_08030 are separated by 92 nucleotidesCA264_08030 and CA264_08035 are separated by 31 nucleotides CA264_08025: CA264_08025 - GMP synthase (glutamine-hydrolyzing), at 1,853,420 to 1,854,949 _08025 CA264_08030: CA264_08030 - hypothetical protein, at 1,855,042 to 1,856,742 _08030 CA264_08035: CA264_08035 - aspartate aminotransferase family protein, at 1,856,774 to 1,858,072 _08035 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -3 -2 -1 0 1at 1854.150 kb on + strand, within CA264_08025at 1854.150 kb on + strand, within CA264_08025at 1854.151 kb on - strand, within CA264_08025at 1854.151 kb on - strand, within CA264_08025at 1854.151 kb on - strand, within CA264_08025at 1854.151 kb on - strand, within CA264_08025at 1854.151 kb on - strand, within CA264_08025at 1854.207 kb on - strand, within CA264_08025at 1854.229 kb on - strand, within CA264_08025at 1854.322 kb on - strand, within CA264_08025at 1854.327 kb on + strand, within CA264_08025at 1854.327 kb on + strand, within CA264_08025at 1854.327 kb on + strand, within CA264_08025at 1854.327 kb on + strand, within CA264_08025at 1854.328 kb on - strand, within CA264_08025at 1854.328 kb on - strand, within CA264_08025at 1854.328 kb on - strand, within CA264_08025at 1854.414 kb on + strand, within CA264_08025at 1854.415 kb on - strand, within CA264_08025at 1854.436 kb on + strand, within CA264_08025at 1854.436 kb on + strand, within CA264_08025at 1854.454 kb on - strand, within CA264_08025at 1854.454 kb on - strand, within CA264_08025at 1854.499 kb on + strand, within CA264_08025at 1854.529 kb on - strand, within CA264_08025at 1854.529 kb on - strand, within CA264_08025at 1854.531 kb on + strand, within CA264_08025at 1854.561 kb on + strand, within CA264_08025at 1854.561 kb on + strand, within CA264_08025at 1854.562 kb on - strand, within CA264_08025at 1854.562 kb on - strand, within CA264_08025at 1854.634 kb on - strand, within CA264_08025at 1854.658 kb on + strand, within CA264_08025at 1854.659 kb on - strand, within CA264_08025at 1854.659 kb on - strand, within CA264_08025at 1854.659 kb on - strand, within CA264_08025at 1854.692 kb on + strand, within CA264_08025at 1854.703 kb on - strand, within CA264_08025at 1854.703 kb on - strand, within CA264_08025at 1854.803 kb on - strandat 1854.803 kb on - strandat 1854.804 kb on + strandat 1854.883 kb on - strandat 1854.905 kb on + strandat 1854.906 kb on - strandat 1854.906 kb on - strandat 1854.934 kb on + strandat 1854.935 kb on - strandat 1854.948 kb on - strandat 1854.948 kb on - strandat 1854.986 kb on + strandat 1855.002 kb on + strandat 1855.076 kb on + strandat 1855.249 kb on + strand, within CA264_08030at 1855.292 kb on - strand, within CA264_08030at 1855.304 kb on + strand, within CA264_08030at 1855.694 kb on + strand, within CA264_08030at 1855.718 kb on - strand, within CA264_08030at 1855.759 kb on + strand, within CA264_08030at 1856.376 kb on - strand, within CA264_08030at 1856.479 kb on + strand, within CA264_08030at 1856.757 kb on - strandat 1856.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
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1,854,150 + CA264_08025 0.48 -0.4
1,854,150 + CA264_08025 0.48 +0.1
1,854,151 - CA264_08025 0.48 +0.3
1,854,151 - CA264_08025 0.48 +0.6
1,854,151 - CA264_08025 0.48 -0.1
1,854,151 - CA264_08025 0.48 +0.4
1,854,151 - CA264_08025 0.48 -0.8
1,854,207 - CA264_08025 0.51 -0.8
1,854,229 - CA264_08025 0.53 -0.1
1,854,322 - CA264_08025 0.59 -0.3
1,854,327 + CA264_08025 0.59 -0.6
1,854,327 + CA264_08025 0.59 +0.2
1,854,327 + CA264_08025 0.59 +1.2
1,854,327 + CA264_08025 0.59 -0.2
1,854,328 - CA264_08025 0.59 +0.0
1,854,328 - CA264_08025 0.59 +0.3
1,854,328 - CA264_08025 0.59 +0.0
1,854,414 + CA264_08025 0.65 -0.4
1,854,415 - CA264_08025 0.65 +0.1
1,854,436 + CA264_08025 0.66 -0.3
1,854,436 + CA264_08025 0.66 -0.0
1,854,454 - CA264_08025 0.68 +0.0
1,854,454 - CA264_08025 0.68 -1.3
1,854,499 + CA264_08025 0.71 -0.9
1,854,529 - CA264_08025 0.72 -0.5
1,854,529 - CA264_08025 0.72 +0.8
1,854,531 + CA264_08025 0.73 -0.8
1,854,561 + CA264_08025 0.75 -0.4
1,854,561 + CA264_08025 0.75 -0.3
1,854,562 - CA264_08025 0.75 -0.1
1,854,562 - CA264_08025 0.75 -0.0
1,854,634 - CA264_08025 0.79 -0.1
1,854,658 + CA264_08025 0.81 -0.5
1,854,659 - CA264_08025 0.81 -1.3
1,854,659 - CA264_08025 0.81 -0.1
1,854,659 - CA264_08025 0.81 -0.5
1,854,692 + CA264_08025 0.83 +0.0
1,854,703 - CA264_08025 0.84 -0.6
1,854,703 - CA264_08025 0.84 -0.6
1,854,803 - -0.0
1,854,803 - +0.8
1,854,804 + -0.1
1,854,883 - -0.2
1,854,905 + +0.5
1,854,906 - +0.2
1,854,906 - -0.4
1,854,934 + -0.7
1,854,935 - +0.2
1,854,948 - -0.3
1,854,948 - +0.4
1,854,986 + +0.1
1,855,002 + -1.4
1,855,076 + -3.4
1,855,249 + CA264_08030 0.12 -1.9
1,855,292 - CA264_08030 0.15 -0.5
1,855,304 + CA264_08030 0.15 -1.5
1,855,694 + CA264_08030 0.38 -1.0
1,855,718 - CA264_08030 0.40 -2.2
1,855,759 + CA264_08030 0.42 -2.1
1,856,376 - CA264_08030 0.78 -2.4
1,856,479 + CA264_08030 0.84 -2.0
1,856,757 - -0.8
1,856,767 - -2.6

Or see this region's nucleotide sequence