Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07995 and CA264_08000 are separated by 115 nucleotides CA264_08000 and CA264_08005 are separated by 0 nucleotides CA264_08005 and CA264_08010 are separated by 6 nucleotides
CA264_07995: CA264_07995 - hypothetical protein, at 1,849,315 to 1,850,463
_07995
CA264_08000: CA264_08000 - hypothetical protein, at 1,850,579 to 1,851,241
_08000
CA264_08005: CA264_08005 - phosphonate ABC transporter ATP-binding protein, at 1,851,242 to 1,851,961
_08005
CA264_08010: CA264_08010 - fructose-6-phosphate aldolase, at 1,851,968 to 1,852,171
_08010
Position (kb)
1850
1851
1852 Strain fitness (log2 ratio)
-1
0
1
2 at 1849.579 kb on - strand, within CA264_07995 at 1849.580 kb on + strand, within CA264_07995 at 1849.580 kb on + strand, within CA264_07995 at 1849.581 kb on - strand, within CA264_07995 at 1849.581 kb on - strand, within CA264_07995 at 1849.590 kb on - strand, within CA264_07995 at 1849.590 kb on - strand, within CA264_07995 at 1849.628 kb on - strand, within CA264_07995 at 1849.655 kb on + strand, within CA264_07995 at 1849.655 kb on + strand, within CA264_07995 at 1849.656 kb on - strand, within CA264_07995 at 1849.656 kb on - strand, within CA264_07995 at 1849.658 kb on + strand, within CA264_07995 at 1849.658 kb on + strand, within CA264_07995 at 1849.689 kb on - strand, within CA264_07995 at 1849.689 kb on - strand, within CA264_07995 at 1849.689 kb on - strand, within CA264_07995 at 1849.689 kb on - strand, within CA264_07995 at 1849.693 kb on - strand, within CA264_07995 at 1850.152 kb on + strand, within CA264_07995 at 1850.188 kb on + strand, within CA264_07995 at 1850.189 kb on - strand, within CA264_07995 at 1850.190 kb on + strand, within CA264_07995 at 1850.340 kb on + strand, within CA264_07995 at 1850.393 kb on + strand at 1850.394 kb on - strand at 1850.465 kb on + strand at 1850.465 kb on + strand at 1850.505 kb on - strand at 1850.535 kb on + strand at 1850.535 kb on + strand at 1850.536 kb on - strand at 1850.560 kb on + strand at 1850.560 kb on + strand at 1850.561 kb on - strand at 1850.564 kb on + strand at 1850.567 kb on - strand at 1850.584 kb on + strand at 1850.584 kb on + strand at 1850.584 kb on + strand at 1850.584 kb on + strand at 1850.584 kb on + strand at 1850.644 kb on + strand at 1850.701 kb on - strand, within CA264_08000 at 1850.811 kb on - strand, within CA264_08000 at 1850.811 kb on - strand, within CA264_08000 at 1850.811 kb on - strand, within CA264_08000 at 1850.829 kb on + strand, within CA264_08000 at 1850.830 kb on - strand, within CA264_08000 at 1850.833 kb on - strand, within CA264_08000 at 1850.899 kb on + strand, within CA264_08000 at 1850.899 kb on + strand, within CA264_08000 at 1850.900 kb on - strand, within CA264_08000 at 1850.931 kb on - strand, within CA264_08000 at 1851.180 kb on + strand at 1851.271 kb on + strand at 1851.566 kb on + strand, within CA264_08005 at 1851.965 kb on + strand at 1851.965 kb on + strand at 1851.966 kb on - strand at 1851.969 kb on + strand at 1851.969 kb on + strand at 1851.970 kb on - strand at 1851.972 kb on - strand at 1851.978 kb on - strand at 1852.163 kb on + strand at 1852.197 kb on - strand at 1852.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 1,849,579 - CA264_07995 0.23 +0.6 1,849,580 + CA264_07995 0.23 -0.3 1,849,580 + CA264_07995 0.23 +0.5 1,849,581 - CA264_07995 0.23 +0.1 1,849,581 - CA264_07995 0.23 +0.5 1,849,590 - CA264_07995 0.24 -0.1 1,849,590 - CA264_07995 0.24 -0.7 1,849,628 - CA264_07995 0.27 +0.2 1,849,655 + CA264_07995 0.30 -0.3 1,849,655 + CA264_07995 0.30 +0.4 1,849,656 - CA264_07995 0.30 +0.4 1,849,656 - CA264_07995 0.30 +0.4 1,849,658 + CA264_07995 0.30 +0.3 1,849,658 + CA264_07995 0.30 +0.4 1,849,689 - CA264_07995 0.33 +0.0 1,849,689 - CA264_07995 0.33 -0.6 1,849,689 - CA264_07995 0.33 -1.0 1,849,689 - CA264_07995 0.33 +1.0 1,849,693 - CA264_07995 0.33 +0.0 1,850,152 + CA264_07995 0.73 +1.8 1,850,188 + CA264_07995 0.76 +0.6 1,850,189 - CA264_07995 0.76 -0.2 1,850,190 + CA264_07995 0.76 +0.9 1,850,340 + CA264_07995 0.89 +1.0 1,850,393 + +0.9 1,850,394 - +0.4 1,850,465 + +0.7 1,850,465 + +1.3 1,850,505 - +0.6 1,850,535 + +0.9 1,850,535 + +1.2 1,850,536 - -0.4 1,850,560 + -0.7 1,850,560 + +1.0 1,850,561 - +0.1 1,850,564 + +1.3 1,850,567 - +0.1 1,850,584 + +1.0 1,850,584 + +0.5 1,850,584 + +0.7 1,850,584 + -1.2 1,850,584 + +0.9 1,850,644 + +0.8 1,850,701 - CA264_08000 0.18 +0.8 1,850,811 - CA264_08000 0.35 +0.7 1,850,811 - CA264_08000 0.35 +0.5 1,850,811 - CA264_08000 0.35 +1.2 1,850,829 + CA264_08000 0.38 +1.0 1,850,830 - CA264_08000 0.38 -0.2 1,850,833 - CA264_08000 0.38 +0.3 1,850,899 + CA264_08000 0.48 +0.5 1,850,899 + CA264_08000 0.48 -0.0 1,850,900 - CA264_08000 0.48 +0.3 1,850,931 - CA264_08000 0.53 +0.3 1,851,180 + +1.0 1,851,271 + +1.1 1,851,566 + CA264_08005 0.45 +0.2 1,851,965 + +0.5 1,851,965 + -0.3 1,851,966 - +0.7 1,851,969 + +1.0 1,851,969 + +0.7 1,851,970 - +0.3 1,851,972 - -0.0 1,851,978 - -0.1 1,852,163 + +0.0 1,852,197 - -0.3 1,852,210 + -0.5
Or see this region's nucleotide sequence