Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06595

Experiment: m.b. Ceftazidime 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06590 and CA264_06595 are separated by 149 nucleotidesCA264_06595 and CA264_06600 are separated by 54 nucleotides CA264_06590: CA264_06590 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,518,641 to 1,519,531 _06590 CA264_06595: CA264_06595 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,519,681 to 1,520,493 _06595 CA264_06600: CA264_06600 - glycosyltransferase, at 1,520,548 to 1,521,717 _06600 Position (kb) 1519 1520 1521Strain fitness (log2 ratio) -1 0 1 2at 1518.720 kb on + strandat 1518.721 kb on - strandat 1518.729 kb on + strandat 1518.733 kb on + strand, within CA264_06590at 1518.733 kb on + strand, within CA264_06590at 1518.733 kb on + strand, within CA264_06590at 1518.876 kb on + strand, within CA264_06590at 1518.877 kb on - strand, within CA264_06590at 1518.877 kb on - strand, within CA264_06590at 1518.956 kb on + strand, within CA264_06590at 1518.956 kb on + strand, within CA264_06590at 1518.956 kb on + strand, within CA264_06590at 1518.957 kb on - strand, within CA264_06590at 1518.957 kb on - strand, within CA264_06590at 1518.957 kb on - strand, within CA264_06590at 1518.957 kb on - strand, within CA264_06590at 1518.974 kb on - strand, within CA264_06590at 1519.086 kb on + strand, within CA264_06590at 1519.126 kb on - strand, within CA264_06590at 1519.222 kb on + strand, within CA264_06590at 1519.223 kb on - strand, within CA264_06590at 1519.241 kb on + strand, within CA264_06590at 1519.404 kb on - strand, within CA264_06590at 1519.404 kb on - strand, within CA264_06590at 1519.425 kb on + strand, within CA264_06590at 1519.426 kb on - strand, within CA264_06590at 1519.476 kb on - strandat 1519.539 kb on - strandat 1519.588 kb on - strandat 1519.592 kb on + strandat 1519.637 kb on + strandat 1519.637 kb on + strandat 1519.639 kb on + strandat 1519.643 kb on + strandat 1519.643 kb on + strandat 1519.643 kb on + strandat 1519.644 kb on - strandat 1520.476 kb on + strandat 1520.516 kb on + strandat 1520.517 kb on - strandat 1520.519 kb on + strandat 1520.519 kb on + strandat 1520.519 kb on + strandat 1520.520 kb on - strandat 1520.704 kb on + strand, within CA264_06600at 1520.704 kb on + strand, within CA264_06600at 1520.704 kb on + strand, within CA264_06600at 1520.705 kb on - strand, within CA264_06600at 1520.767 kb on + strand, within CA264_06600at 1520.767 kb on + strand, within CA264_06600at 1520.768 kb on - strand, within CA264_06600at 1520.814 kb on + strand, within CA264_06600at 1520.845 kb on + strand, within CA264_06600at 1520.866 kb on - strand, within CA264_06600at 1520.875 kb on + strand, within CA264_06600at 1520.876 kb on - strand, within CA264_06600at 1520.882 kb on + strand, within CA264_06600at 1520.882 kb on + strand, within CA264_06600at 1520.883 kb on - strand, within CA264_06600at 1520.883 kb on - strand, within CA264_06600at 1520.883 kb on - strand, within CA264_06600at 1521.059 kb on - strand, within CA264_06600at 1521.098 kb on - strand, within CA264_06600at 1521.111 kb on + strand, within CA264_06600at 1521.152 kb on - strand, within CA264_06600at 1521.240 kb on - strand, within CA264_06600at 1521.240 kb on - strand, within CA264_06600at 1521.246 kb on + strand, within CA264_06600at 1521.275 kb on + strand, within CA264_06600at 1521.310 kb on + strand, within CA264_06600at 1521.311 kb on - strand, within CA264_06600at 1521.389 kb on + strand, within CA264_06600at 1521.390 kb on - strand, within CA264_06600at 1521.442 kb on + strand, within CA264_06600at 1521.448 kb on + strand, within CA264_06600at 1521.448 kb on + strand, within CA264_06600at 1521.448 kb on + strand, within CA264_06600at 1521.448 kb on + strand, within CA264_06600at 1521.449 kb on - strand, within CA264_06600at 1521.449 kb on - strand, within CA264_06600at 1521.458 kb on - strand, within CA264_06600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
remove
1,518,720 + -0.3
1,518,721 - +0.8
1,518,729 + +1.8
1,518,733 + CA264_06590 0.10 +0.6
1,518,733 + CA264_06590 0.10 -0.8
1,518,733 + CA264_06590 0.10 +0.0
1,518,876 + CA264_06590 0.26 +0.7
1,518,877 - CA264_06590 0.26 +0.5
1,518,877 - CA264_06590 0.26 +0.0
1,518,956 + CA264_06590 0.35 +0.4
1,518,956 + CA264_06590 0.35 -0.0
1,518,956 + CA264_06590 0.35 +0.2
1,518,957 - CA264_06590 0.35 -1.3
1,518,957 - CA264_06590 0.35 +0.3
1,518,957 - CA264_06590 0.35 +1.0
1,518,957 - CA264_06590 0.35 +0.5
1,518,974 - CA264_06590 0.37 -0.2
1,519,086 + CA264_06590 0.50 -1.6
1,519,126 - CA264_06590 0.54 +0.0
1,519,222 + CA264_06590 0.65 +0.1
1,519,223 - CA264_06590 0.65 -0.6
1,519,241 + CA264_06590 0.67 -0.0
1,519,404 - CA264_06590 0.86 -0.5
1,519,404 - CA264_06590 0.86 +0.7
1,519,425 + CA264_06590 0.88 +0.7
1,519,426 - CA264_06590 0.88 +1.1
1,519,476 - +0.1
1,519,539 - -0.2
1,519,588 - -0.4
1,519,592 + +0.1
1,519,637 + -0.2
1,519,637 + -0.5
1,519,639 + +0.4
1,519,643 + -0.4
1,519,643 + +0.1
1,519,643 + -1.2
1,519,644 - -0.5
1,520,476 + +1.0
1,520,516 + +0.9
1,520,517 - +0.7
1,520,519 + -0.1
1,520,519 + +1.3
1,520,519 + +1.1
1,520,520 - +1.1
1,520,704 + CA264_06600 0.13 +1.0
1,520,704 + CA264_06600 0.13 +0.7
1,520,704 + CA264_06600 0.13 +1.2
1,520,705 - CA264_06600 0.13 +0.7
1,520,767 + CA264_06600 0.19 +1.7
1,520,767 + CA264_06600 0.19 +0.9
1,520,768 - CA264_06600 0.19 +0.4
1,520,814 + CA264_06600 0.23 +0.8
1,520,845 + CA264_06600 0.25 +0.6
1,520,866 - CA264_06600 0.27 +1.0
1,520,875 + CA264_06600 0.28 +1.4
1,520,876 - CA264_06600 0.28 +0.4
1,520,882 + CA264_06600 0.29 +1.0
1,520,882 + CA264_06600 0.29 +1.4
1,520,883 - CA264_06600 0.29 +1.2
1,520,883 - CA264_06600 0.29 +1.3
1,520,883 - CA264_06600 0.29 +0.9
1,521,059 - CA264_06600 0.44 +0.6
1,521,098 - CA264_06600 0.47 +0.9
1,521,111 + CA264_06600 0.48 +1.0
1,521,152 - CA264_06600 0.52 +0.6
1,521,240 - CA264_06600 0.59 +2.0
1,521,240 - CA264_06600 0.59 +1.3
1,521,246 + CA264_06600 0.60 +1.5
1,521,275 + CA264_06600 0.62 +1.2
1,521,310 + CA264_06600 0.65 +1.9
1,521,311 - CA264_06600 0.65 +0.9
1,521,389 + CA264_06600 0.72 +1.4
1,521,390 - CA264_06600 0.72 +0.8
1,521,442 + CA264_06600 0.76 +1.2
1,521,448 + CA264_06600 0.77 +1.5
1,521,448 + CA264_06600 0.77 +1.9
1,521,448 + CA264_06600 0.77 +1.1
1,521,448 + CA264_06600 0.77 +1.2
1,521,449 - CA264_06600 0.77 +1.2
1,521,449 - CA264_06600 0.77 +1.3
1,521,458 - CA264_06600 0.78 +1.2

Or see this region's nucleotide sequence