Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03785 and CA264_03790 are separated by 44 nucleotides CA264_03790 and CA264_03795 are separated by 92 nucleotides CA264_03795 and CA264_03800 are separated by 352 nucleotides CA264_03800 and CA264_03805 are separated by 23 nucleotides
CA264_03785: CA264_03785 - translation initiation factor, at 887,135 to 887,482
_03785
CA264_03790: CA264_03790 - hypothetical protein, at 887,527 to 887,961
_03790
CA264_03795: CA264_03795 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 888,054 to 888,788
_03795
CA264_03800: CA264_03800 - hypothetical protein, at 889,141 to 889,491
_03800
CA264_03805: CA264_03805 - serine protease, at 889,515 to 890,885
_03805
Position (kb) 888
889 Strain fitness (log2 ratio) -1
0
1 at 887.078 kb on + strand at 887.079 kb on - strand at 887.079 kb on - strand at 887.093 kb on + strand at 887.094 kb on - strand at 887.105 kb on + strand at 887.107 kb on + strand at 887.108 kb on - strand at 887.172 kb on + strand, within CA264_03785 at 887.198 kb on + strand, within CA264_03785 at 887.198 kb on + strand, within CA264_03785 at 887.199 kb on - strand, within CA264_03785 at 887.295 kb on + strand, within CA264_03785 at 887.431 kb on - strand, within CA264_03785 at 887.459 kb on - strand at 887.511 kb on + strand at 887.597 kb on - strand, within CA264_03790 at 887.635 kb on + strand, within CA264_03790 at 887.636 kb on - strand, within CA264_03790 at 887.708 kb on + strand, within CA264_03790 at 887.732 kb on + strand, within CA264_03790 at 887.824 kb on + strand, within CA264_03790 at 887.824 kb on + strand, within CA264_03790 at 887.904 kb on - strand, within CA264_03790 at 887.904 kb on - strand, within CA264_03790 at 887.918 kb on + strand at 888.031 kb on + strand at 888.031 kb on + strand at 888.032 kb on - strand at 888.032 kb on - strand at 888.032 kb on - strand at 888.032 kb on - strand at 888.780 kb on + strand at 888.795 kb on + strand at 888.796 kb on - strand at 888.803 kb on - strand at 888.821 kb on - strand at 888.905 kb on + strand at 888.991 kb on + strand at 889.042 kb on - strand at 889.042 kb on - strand at 889.058 kb on - strand at 889.073 kb on + strand at 889.076 kb on + strand at 889.077 kb on - strand at 889.077 kb on - strand at 889.078 kb on + strand at 889.095 kb on + strand at 889.140 kb on - strand at 889.145 kb on - strand at 889.238 kb on + strand, within CA264_03800 at 889.238 kb on + strand, within CA264_03800 at 889.310 kb on + strand, within CA264_03800 at 889.324 kb on + strand, within CA264_03800 at 889.324 kb on + strand, within CA264_03800 at 889.358 kb on - strand, within CA264_03800 at 889.376 kb on - strand, within CA264_03800 at 889.505 kb on + strand at 889.505 kb on + strand at 889.506 kb on - strand at 889.506 kb on - strand at 889.534 kb on - strand at 889.624 kb on + strand at 889.625 kb on - strand at 889.630 kb on - strand at 889.630 kb on - strand at 889.630 kb on - strand at 889.639 kb on - strand at 889.639 kb on - strand at 889.644 kb on - strand at 889.673 kb on - strand, within CA264_03805 at 889.769 kb on + strand, within CA264_03805 at 889.769 kb on + strand, within CA264_03805 at 889.769 kb on + strand, within CA264_03805 at 889.769 kb on + strand, within CA264_03805
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 887,078 + +1.0 887,079 - -0.3 887,079 - -0.1 887,093 + +0.0 887,094 - -0.2 887,105 + -0.4 887,107 + +0.5 887,108 - +0.1 887,172 + CA264_03785 0.11 +0.1 887,198 + CA264_03785 0.18 +1.1 887,198 + CA264_03785 0.18 +0.2 887,199 - CA264_03785 0.18 +0.3 887,295 + CA264_03785 0.46 +0.3 887,431 - CA264_03785 0.85 -0.3 887,459 - -0.4 887,511 + -0.0 887,597 - CA264_03790 0.16 +0.4 887,635 + CA264_03790 0.25 -0.2 887,636 - CA264_03790 0.25 +0.1 887,708 + CA264_03790 0.42 -0.3 887,732 + CA264_03790 0.47 +1.3 887,824 + CA264_03790 0.68 +0.5 887,824 + CA264_03790 0.68 -0.6 887,904 - CA264_03790 0.87 -0.0 887,904 - CA264_03790 0.87 +0.9 887,918 + +1.6 888,031 + -0.0 888,031 + -0.1 888,032 - -1.4 888,032 - -0.1 888,032 - -0.8 888,032 - -0.1 888,780 + -0.3 888,795 + -0.9 888,796 - -0.3 888,803 - +0.6 888,821 - -0.5 888,905 + +0.7 888,991 + +0.4 889,042 - -1.2 889,042 - -0.4 889,058 - -0.6 889,073 + +0.8 889,076 + +0.3 889,077 - +0.3 889,077 - -0.5 889,078 + -0.1 889,095 + +0.4 889,140 - -0.2 889,145 - +0.9 889,238 + CA264_03800 0.28 +0.8 889,238 + CA264_03800 0.28 +0.3 889,310 + CA264_03800 0.48 +0.8 889,324 + CA264_03800 0.52 +0.1 889,324 + CA264_03800 0.52 +0.1 889,358 - CA264_03800 0.62 -0.8 889,376 - CA264_03800 0.67 -1.1 889,505 + +0.4 889,505 + +0.5 889,506 - +0.4 889,506 - +1.3 889,534 - -1.2 889,624 + +0.7 889,625 - +0.2 889,630 - -0.5 889,630 - +0.3 889,630 - -0.1 889,639 - +0.7 889,639 - +1.1 889,644 - -0.2 889,673 - CA264_03805 0.12 +1.5 889,769 + CA264_03805 0.19 +0.4 889,769 + CA264_03805 0.19 +1.2 889,769 + CA264_03805 0.19 +0.8 889,769 + CA264_03805 0.19 +0.7
Or see this region's nucleotide sequence