Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03635 and CA264_03640 are separated by 195 nucleotides CA264_03640 and CA264_03645 are separated by 183 nucleotides CA264_03645 and CA264_03650 are separated by 20 nucleotides
CA264_03635: CA264_03635 - DoxX family protein, at 848,214 to 848,666
_03635
CA264_03640: CA264_03640 - TetR family transcriptional regulator, at 848,862 to 849,434
_03640
CA264_03645: CA264_03645 - hypothetical protein, at 849,618 to 850,949
_03645
CA264_03650: CA264_03650 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 850,970 to 852,118
_03650
Position (kb)
849
850
851 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 848.692 kb on - strand at 848.695 kb on + strand at 848.696 kb on - strand at 848.696 kb on - strand at 848.696 kb on - strand at 848.699 kb on + strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.707 kb on + strand at 848.707 kb on + strand at 848.809 kb on + strand at 848.810 kb on - strand at 848.810 kb on - strand at 848.818 kb on - strand at 848.939 kb on + strand, within CA264_03640 at 848.939 kb on + strand, within CA264_03640 at 848.940 kb on - strand, within CA264_03640 at 848.940 kb on - strand, within CA264_03640 at 849.113 kb on + strand, within CA264_03640 at 849.141 kb on + strand, within CA264_03640 at 849.143 kb on + strand, within CA264_03640 at 849.183 kb on - strand, within CA264_03640 at 849.183 kb on - strand, within CA264_03640 at 849.200 kb on + strand, within CA264_03640 at 849.292 kb on + strand, within CA264_03640 at 849.454 kb on + strand at 849.455 kb on - strand at 849.513 kb on + strand at 849.593 kb on - strand at 849.615 kb on + strand at 849.616 kb on - strand at 849.643 kb on + strand at 849.736 kb on + strand at 849.852 kb on + strand, within CA264_03645 at 849.853 kb on - strand, within CA264_03645 at 849.872 kb on + strand, within CA264_03645 at 849.873 kb on - strand, within CA264_03645 at 849.899 kb on + strand, within CA264_03645 at 849.900 kb on - strand, within CA264_03645 at 849.900 kb on - strand, within CA264_03645 at 849.908 kb on + strand, within CA264_03645 at 849.924 kb on + strand, within CA264_03645 at 850.058 kb on - strand, within CA264_03645 at 850.146 kb on + strand, within CA264_03645 at 850.167 kb on + strand, within CA264_03645 at 850.167 kb on + strand, within CA264_03645 at 850.168 kb on - strand, within CA264_03645 at 850.168 kb on - strand, within CA264_03645 at 850.183 kb on + strand, within CA264_03645 at 850.278 kb on + strand, within CA264_03645 at 850.363 kb on + strand, within CA264_03645 at 850.363 kb on + strand, within CA264_03645 at 850.489 kb on - strand, within CA264_03645 at 850.498 kb on - strand, within CA264_03645 at 850.509 kb on + strand, within CA264_03645 at 850.509 kb on + strand, within CA264_03645 at 850.537 kb on - strand, within CA264_03645 at 850.609 kb on - strand at 850.660 kb on + strand, within CA264_03645 at 850.661 kb on - strand, within CA264_03645 at 850.715 kb on + strand, within CA264_03645 at 850.725 kb on + strand, within CA264_03645 at 850.725 kb on + strand, within CA264_03645 at 850.776 kb on + strand, within CA264_03645 at 850.777 kb on - strand, within CA264_03645 at 850.818 kb on + strand at 850.819 kb on - strand at 850.870 kb on - strand at 850.872 kb on + strand at 850.872 kb on + strand at 850.873 kb on - strand at 850.933 kb on + strand at 850.933 kb on + strand at 850.963 kb on - strand at 850.979 kb on - strand at 850.982 kb on + strand at 851.018 kb on - strand at 851.020 kb on - strand at 851.131 kb on + strand, within CA264_03650 at 851.131 kb on + strand, within CA264_03650 at 851.131 kb on + strand, within CA264_03650 at 851.207 kb on + strand, within CA264_03650 at 851.271 kb on - strand, within CA264_03650 at 851.397 kb on + strand, within CA264_03650 at 851.398 kb on - strand, within CA264_03650 at 851.398 kb on - strand, within CA264_03650 at 851.402 kb on + strand, within CA264_03650 at 851.402 kb on + strand, within CA264_03650 at 851.621 kb on - strand, within CA264_03650 at 851.647 kb on - strand, within CA264_03650 at 851.712 kb on - strand, within CA264_03650 at 851.773 kb on + strand, within CA264_03650 at 851.774 kb on - strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.912 kb on + strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.913 kb on - strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.918 kb on + strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.919 kb on - strand, within CA264_03650 at 851.922 kb on + strand, within CA264_03650 at 851.922 kb on + strand, within CA264_03650
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 848,692 - +0.1 848,695 + -2.0 848,696 - -0.9 848,696 - +0.1 848,696 - +0.1 848,699 + -1.6 848,700 - -0.2 848,700 - -0.5 848,700 - +0.2 848,700 - +0.2 848,707 + -1.3 848,707 + -1.6 848,809 + -0.7 848,810 - +0.3 848,810 - +0.2 848,818 - -1.0 848,939 + CA264_03640 0.13 -2.1 848,939 + CA264_03640 0.13 -0.7 848,940 - CA264_03640 0.14 +0.9 848,940 - CA264_03640 0.14 +0.5 849,113 + CA264_03640 0.44 -1.1 849,141 + CA264_03640 0.49 -0.5 849,143 + CA264_03640 0.49 -2.0 849,183 - CA264_03640 0.56 +1.0 849,183 - CA264_03640 0.56 -0.3 849,200 + CA264_03640 0.59 -2.1 849,292 + CA264_03640 0.75 -2.7 849,454 + -3.2 849,455 - +0.2 849,513 + -2.0 849,593 - -1.6 849,615 + -0.1 849,616 - -1.2 849,643 + -1.0 849,736 + -0.1 849,852 + CA264_03645 0.18 -1.1 849,853 - CA264_03645 0.18 -2.5 849,872 + CA264_03645 0.19 +0.5 849,873 - CA264_03645 0.19 -1.1 849,899 + CA264_03645 0.21 -1.0 849,900 - CA264_03645 0.21 -0.2 849,900 - CA264_03645 0.21 -0.1 849,908 + CA264_03645 0.22 +0.1 849,924 + CA264_03645 0.23 -1.9 850,058 - CA264_03645 0.33 -0.3 850,146 + CA264_03645 0.40 -1.6 850,167 + CA264_03645 0.41 -1.5 850,167 + CA264_03645 0.41 -2.4 850,168 - CA264_03645 0.41 -2.6 850,168 - CA264_03645 0.41 -0.1 850,183 + CA264_03645 0.42 -0.9 850,278 + CA264_03645 0.50 -0.7 850,363 + CA264_03645 0.56 -1.2 850,363 + CA264_03645 0.56 -2.0 850,489 - CA264_03645 0.65 -1.0 850,498 - CA264_03645 0.66 +0.9 850,509 + CA264_03645 0.67 -1.1 850,509 + CA264_03645 0.67 -2.5 850,537 - CA264_03645 0.69 -0.1 850,609 - +0.8 850,660 + CA264_03645 0.78 +0.3 850,661 - CA264_03645 0.78 +0.6 850,715 + CA264_03645 0.82 -2.1 850,725 + CA264_03645 0.83 -2.3 850,725 + CA264_03645 0.83 -3.1 850,776 + CA264_03645 0.87 -1.6 850,777 - CA264_03645 0.87 +1.8 850,818 + -2.0 850,819 - -0.7 850,870 - +0.2 850,872 + -2.1 850,872 + -0.5 850,873 - -0.3 850,933 + -1.5 850,933 + -1.2 850,963 - -0.4 850,979 - -0.8 850,982 + -0.1 851,018 - +0.3 851,020 - -0.3 851,131 + CA264_03650 0.14 -0.3 851,131 + CA264_03650 0.14 -0.5 851,131 + CA264_03650 0.14 -0.7 851,207 + CA264_03650 0.21 -0.7 851,271 - CA264_03650 0.26 -0.4 851,397 + CA264_03650 0.37 -1.1 851,398 - CA264_03650 0.37 -0.8 851,398 - CA264_03650 0.37 +0.0 851,402 + CA264_03650 0.38 -0.4 851,402 + CA264_03650 0.38 -1.1 851,621 - CA264_03650 0.57 -0.5 851,647 - CA264_03650 0.59 -0.5 851,712 - CA264_03650 0.65 -0.3 851,773 + CA264_03650 0.70 -1.0 851,774 - CA264_03650 0.70 -0.3 851,912 + CA264_03650 0.82 -2.1 851,912 + CA264_03650 0.82 -0.7 851,912 + CA264_03650 0.82 -1.8 851,912 + CA264_03650 0.82 -1.6 851,912 + CA264_03650 0.82 -2.1 851,913 - CA264_03650 0.82 -0.0 851,913 - CA264_03650 0.82 -1.0 851,913 - CA264_03650 0.82 -0.5 851,913 - CA264_03650 0.82 -0.2 851,913 - CA264_03650 0.82 -1.2 851,918 + CA264_03650 0.83 -1.7 851,918 + CA264_03650 0.83 -1.2 851,918 + CA264_03650 0.83 -0.5 851,919 - CA264_03650 0.83 -0.4 851,919 - CA264_03650 0.83 -0.7 851,919 - CA264_03650 0.83 -0.1 851,919 - CA264_03650 0.83 +0.2 851,919 - CA264_03650 0.83 +0.1 851,922 + CA264_03650 0.83 -1.7 851,922 + CA264_03650 0.83 -2.2
Or see this region's nucleotide sequence