Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03645

Experiment: m.b. Ceftazidime 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03635 and CA264_03640 are separated by 195 nucleotidesCA264_03640 and CA264_03645 are separated by 183 nucleotidesCA264_03645 and CA264_03650 are separated by 20 nucleotides CA264_03635: CA264_03635 - DoxX family protein, at 848,214 to 848,666 _03635 CA264_03640: CA264_03640 - TetR family transcriptional regulator, at 848,862 to 849,434 _03640 CA264_03645: CA264_03645 - hypothetical protein, at 849,618 to 850,949 _03645 CA264_03650: CA264_03650 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 850,970 to 852,118 _03650 Position (kb) 849 850 851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 848.692 kb on - strandat 848.695 kb on + strandat 848.696 kb on - strandat 848.696 kb on - strandat 848.696 kb on - strandat 848.699 kb on + strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.707 kb on + strandat 848.707 kb on + strandat 848.809 kb on + strandat 848.810 kb on - strandat 848.810 kb on - strandat 848.818 kb on - strandat 848.939 kb on + strand, within CA264_03640at 848.939 kb on + strand, within CA264_03640at 848.940 kb on - strand, within CA264_03640at 848.940 kb on - strand, within CA264_03640at 849.113 kb on + strand, within CA264_03640at 849.141 kb on + strand, within CA264_03640at 849.143 kb on + strand, within CA264_03640at 849.183 kb on - strand, within CA264_03640at 849.183 kb on - strand, within CA264_03640at 849.200 kb on + strand, within CA264_03640at 849.292 kb on + strand, within CA264_03640at 849.454 kb on + strandat 849.455 kb on - strandat 849.513 kb on + strandat 849.593 kb on - strandat 849.615 kb on + strandat 849.616 kb on - strandat 849.643 kb on + strandat 849.736 kb on + strandat 849.852 kb on + strand, within CA264_03645at 849.853 kb on - strand, within CA264_03645at 849.872 kb on + strand, within CA264_03645at 849.873 kb on - strand, within CA264_03645at 849.899 kb on + strand, within CA264_03645at 849.900 kb on - strand, within CA264_03645at 849.900 kb on - strand, within CA264_03645at 849.908 kb on + strand, within CA264_03645at 849.924 kb on + strand, within CA264_03645at 850.058 kb on - strand, within CA264_03645at 850.146 kb on + strand, within CA264_03645at 850.167 kb on + strand, within CA264_03645at 850.167 kb on + strand, within CA264_03645at 850.168 kb on - strand, within CA264_03645at 850.168 kb on - strand, within CA264_03645at 850.183 kb on + strand, within CA264_03645at 850.278 kb on + strand, within CA264_03645at 850.363 kb on + strand, within CA264_03645at 850.363 kb on + strand, within CA264_03645at 850.489 kb on - strand, within CA264_03645at 850.498 kb on - strand, within CA264_03645at 850.509 kb on + strand, within CA264_03645at 850.509 kb on + strand, within CA264_03645at 850.537 kb on - strand, within CA264_03645at 850.609 kb on - strandat 850.660 kb on + strand, within CA264_03645at 850.661 kb on - strand, within CA264_03645at 850.715 kb on + strand, within CA264_03645at 850.725 kb on + strand, within CA264_03645at 850.725 kb on + strand, within CA264_03645at 850.776 kb on + strand, within CA264_03645at 850.777 kb on - strand, within CA264_03645at 850.818 kb on + strandat 850.819 kb on - strandat 850.870 kb on - strandat 850.872 kb on + strandat 850.872 kb on + strandat 850.873 kb on - strandat 850.933 kb on + strandat 850.933 kb on + strandat 850.963 kb on - strandat 850.979 kb on - strandat 850.982 kb on + strandat 851.018 kb on - strandat 851.020 kb on - strandat 851.131 kb on + strand, within CA264_03650at 851.131 kb on + strand, within CA264_03650at 851.131 kb on + strand, within CA264_03650at 851.207 kb on + strand, within CA264_03650at 851.271 kb on - strand, within CA264_03650at 851.397 kb on + strand, within CA264_03650at 851.398 kb on - strand, within CA264_03650at 851.398 kb on - strand, within CA264_03650at 851.402 kb on + strand, within CA264_03650at 851.402 kb on + strand, within CA264_03650at 851.621 kb on - strand, within CA264_03650at 851.647 kb on - strand, within CA264_03650at 851.712 kb on - strand, within CA264_03650at 851.773 kb on + strand, within CA264_03650at 851.774 kb on - strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.912 kb on + strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.913 kb on - strand, within CA264_03650at 851.918 kb on + strand, within CA264_03650at 851.918 kb on + strand, within CA264_03650at 851.918 kb on + strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.919 kb on - strand, within CA264_03650at 851.922 kb on + strand, within CA264_03650at 851.922 kb on + strand, within CA264_03650

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
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848,692 - +0.1
848,695 + -2.0
848,696 - -0.9
848,696 - +0.1
848,696 - +0.1
848,699 + -1.6
848,700 - -0.2
848,700 - -0.5
848,700 - +0.2
848,700 - +0.2
848,707 + -1.3
848,707 + -1.6
848,809 + -0.7
848,810 - +0.3
848,810 - +0.2
848,818 - -1.0
848,939 + CA264_03640 0.13 -2.1
848,939 + CA264_03640 0.13 -0.7
848,940 - CA264_03640 0.14 +0.9
848,940 - CA264_03640 0.14 +0.5
849,113 + CA264_03640 0.44 -1.1
849,141 + CA264_03640 0.49 -0.5
849,143 + CA264_03640 0.49 -2.0
849,183 - CA264_03640 0.56 +1.0
849,183 - CA264_03640 0.56 -0.3
849,200 + CA264_03640 0.59 -2.1
849,292 + CA264_03640 0.75 -2.7
849,454 + -3.2
849,455 - +0.2
849,513 + -2.0
849,593 - -1.6
849,615 + -0.1
849,616 - -1.2
849,643 + -1.0
849,736 + -0.1
849,852 + CA264_03645 0.18 -1.1
849,853 - CA264_03645 0.18 -2.5
849,872 + CA264_03645 0.19 +0.5
849,873 - CA264_03645 0.19 -1.1
849,899 + CA264_03645 0.21 -1.0
849,900 - CA264_03645 0.21 -0.2
849,900 - CA264_03645 0.21 -0.1
849,908 + CA264_03645 0.22 +0.1
849,924 + CA264_03645 0.23 -1.9
850,058 - CA264_03645 0.33 -0.3
850,146 + CA264_03645 0.40 -1.6
850,167 + CA264_03645 0.41 -1.5
850,167 + CA264_03645 0.41 -2.4
850,168 - CA264_03645 0.41 -2.6
850,168 - CA264_03645 0.41 -0.1
850,183 + CA264_03645 0.42 -0.9
850,278 + CA264_03645 0.50 -0.7
850,363 + CA264_03645 0.56 -1.2
850,363 + CA264_03645 0.56 -2.0
850,489 - CA264_03645 0.65 -1.0
850,498 - CA264_03645 0.66 +0.9
850,509 + CA264_03645 0.67 -1.1
850,509 + CA264_03645 0.67 -2.5
850,537 - CA264_03645 0.69 -0.1
850,609 - +0.8
850,660 + CA264_03645 0.78 +0.3
850,661 - CA264_03645 0.78 +0.6
850,715 + CA264_03645 0.82 -2.1
850,725 + CA264_03645 0.83 -2.3
850,725 + CA264_03645 0.83 -3.1
850,776 + CA264_03645 0.87 -1.6
850,777 - CA264_03645 0.87 +1.8
850,818 + -2.0
850,819 - -0.7
850,870 - +0.2
850,872 + -2.1
850,872 + -0.5
850,873 - -0.3
850,933 + -1.5
850,933 + -1.2
850,963 - -0.4
850,979 - -0.8
850,982 + -0.1
851,018 - +0.3
851,020 - -0.3
851,131 + CA264_03650 0.14 -0.3
851,131 + CA264_03650 0.14 -0.5
851,131 + CA264_03650 0.14 -0.7
851,207 + CA264_03650 0.21 -0.7
851,271 - CA264_03650 0.26 -0.4
851,397 + CA264_03650 0.37 -1.1
851,398 - CA264_03650 0.37 -0.8
851,398 - CA264_03650 0.37 +0.0
851,402 + CA264_03650 0.38 -0.4
851,402 + CA264_03650 0.38 -1.1
851,621 - CA264_03650 0.57 -0.5
851,647 - CA264_03650 0.59 -0.5
851,712 - CA264_03650 0.65 -0.3
851,773 + CA264_03650 0.70 -1.0
851,774 - CA264_03650 0.70 -0.3
851,912 + CA264_03650 0.82 -2.1
851,912 + CA264_03650 0.82 -0.7
851,912 + CA264_03650 0.82 -1.8
851,912 + CA264_03650 0.82 -1.6
851,912 + CA264_03650 0.82 -2.1
851,913 - CA264_03650 0.82 -0.0
851,913 - CA264_03650 0.82 -1.0
851,913 - CA264_03650 0.82 -0.5
851,913 - CA264_03650 0.82 -0.2
851,913 - CA264_03650 0.82 -1.2
851,918 + CA264_03650 0.83 -1.7
851,918 + CA264_03650 0.83 -1.2
851,918 + CA264_03650 0.83 -0.5
851,919 - CA264_03650 0.83 -0.4
851,919 - CA264_03650 0.83 -0.7
851,919 - CA264_03650 0.83 -0.1
851,919 - CA264_03650 0.83 +0.2
851,919 - CA264_03650 0.83 +0.1
851,922 + CA264_03650 0.83 -1.7
851,922 + CA264_03650 0.83 -2.2

Or see this region's nucleotide sequence