Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03630 and CA264_03635 are separated by 212 nucleotides CA264_03635 and CA264_03640 are separated by 195 nucleotides CA264_03640 and CA264_03645 are separated by 183 nucleotides
CA264_03630: CA264_03630 - PAS domain-containing sensor histidine kinase, at 846,043 to 848,001
_03630
CA264_03635: CA264_03635 - DoxX family protein, at 848,214 to 848,666
_03635
CA264_03640: CA264_03640 - TetR family transcriptional regulator, at 848,862 to 849,434
_03640
CA264_03645: CA264_03645 - hypothetical protein, at 849,618 to 850,949
_03645
Position (kb) 848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 847.506 kb on + strand, within CA264_03630 at 847.726 kb on - strand, within CA264_03630 at 847.734 kb on - strand, within CA264_03630 at 847.746 kb on + strand, within CA264_03630 at 847.746 kb on + strand, within CA264_03630 at 847.763 kb on - strand, within CA264_03630 at 847.763 kb on - strand, within CA264_03630 at 847.834 kb on - strand at 847.854 kb on - strand at 847.914 kb on + strand at 847.915 kb on - strand at 847.918 kb on - strand at 847.918 kb on - strand at 847.929 kb on + strand at 847.960 kb on + strand at 847.961 kb on - strand at 847.961 kb on - strand at 848.089 kb on - strand at 848.105 kb on + strand at 848.128 kb on + strand at 848.147 kb on - strand at 848.150 kb on + strand at 848.150 kb on + strand at 848.151 kb on - strand at 848.198 kb on - strand at 848.282 kb on + strand, within CA264_03635 at 848.438 kb on + strand, within CA264_03635 at 848.552 kb on + strand, within CA264_03635 at 848.552 kb on + strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.562 kb on + strand, within CA264_03635 at 848.562 kb on + strand, within CA264_03635 at 848.692 kb on - strand at 848.695 kb on + strand at 848.696 kb on - strand at 848.696 kb on - strand at 848.696 kb on - strand at 848.699 kb on + strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.707 kb on + strand at 848.707 kb on + strand at 848.809 kb on + strand at 848.810 kb on - strand at 848.810 kb on - strand at 848.818 kb on - strand at 848.939 kb on + strand, within CA264_03640 at 848.939 kb on + strand, within CA264_03640 at 848.940 kb on - strand, within CA264_03640 at 848.940 kb on - strand, within CA264_03640 at 849.113 kb on + strand, within CA264_03640 at 849.141 kb on + strand, within CA264_03640 at 849.143 kb on + strand, within CA264_03640 at 849.183 kb on - strand, within CA264_03640 at 849.183 kb on - strand, within CA264_03640 at 849.200 kb on + strand, within CA264_03640 at 849.292 kb on + strand, within CA264_03640 at 849.454 kb on + strand at 849.455 kb on - strand at 849.513 kb on + strand at 849.593 kb on - strand at 849.615 kb on + strand at 849.616 kb on - strand at 849.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 847,506 + CA264_03630 0.75 +0.2 847,726 - CA264_03630 0.86 +0.5 847,734 - CA264_03630 0.86 +0.1 847,746 + CA264_03630 0.87 +0.0 847,746 + CA264_03630 0.87 -0.3 847,763 - CA264_03630 0.88 +0.3 847,763 - CA264_03630 0.88 -0.9 847,834 - -0.3 847,854 - -0.1 847,914 + -0.2 847,915 - -0.3 847,918 - -0.5 847,918 - -0.2 847,929 + +0.3 847,960 + +0.9 847,961 - +1.3 847,961 - -0.0 848,089 - -0.9 848,105 + -1.7 848,128 + -0.5 848,147 - +0.7 848,150 + +0.5 848,150 + -1.5 848,151 - +0.1 848,198 - -0.2 848,282 + CA264_03635 0.15 -0.7 848,438 + CA264_03635 0.49 -1.7 848,552 + CA264_03635 0.75 -0.9 848,552 + CA264_03635 0.75 -1.2 848,553 - CA264_03635 0.75 -0.6 848,553 - CA264_03635 0.75 -1.7 848,553 - CA264_03635 0.75 +0.3 848,553 - CA264_03635 0.75 -0.6 848,562 + CA264_03635 0.77 -1.1 848,562 + CA264_03635 0.77 -2.0 848,692 - +0.1 848,695 + -2.0 848,696 - -0.9 848,696 - +0.1 848,696 - +0.1 848,699 + -1.6 848,700 - -0.2 848,700 - -0.5 848,700 - +0.2 848,700 - +0.2 848,707 + -1.3 848,707 + -1.6 848,809 + -0.7 848,810 - +0.3 848,810 - +0.2 848,818 - -1.0 848,939 + CA264_03640 0.13 -2.1 848,939 + CA264_03640 0.13 -0.7 848,940 - CA264_03640 0.14 +0.9 848,940 - CA264_03640 0.14 +0.5 849,113 + CA264_03640 0.44 -1.1 849,141 + CA264_03640 0.49 -0.5 849,143 + CA264_03640 0.49 -2.0 849,183 - CA264_03640 0.56 +1.0 849,183 - CA264_03640 0.56 -0.3 849,200 + CA264_03640 0.59 -2.1 849,292 + CA264_03640 0.75 -2.7 849,454 + -3.2 849,455 - +0.2 849,513 + -2.0 849,593 - -1.6 849,615 + -0.1 849,616 - -1.2 849,643 + -1.0
Or see this region's nucleotide sequence