Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03470 and CA264_03475 are separated by 349 nucleotides CA264_03475 and CA264_03480 are separated by 79 nucleotides
CA264_03470: CA264_03470 - short-chain dehydrogenase, at 809,370 to 810,140
_03470
CA264_03475: CA264_03475 - oxidoreductase, at 810,490 to 811,362
_03475
CA264_03480: CA264_03480 - hypothetical protein, at 811,442 to 812,173
_03480
Position (kb) 810
811
812 Strain fitness (log2 ratio) -2
-1
0
1 at 809.589 kb on + strand, within CA264_03470 at 809.605 kb on + strand, within CA264_03470 at 809.683 kb on - strand, within CA264_03470 at 809.709 kb on + strand, within CA264_03470 at 809.710 kb on - strand, within CA264_03470 at 809.765 kb on - strand, within CA264_03470 at 809.904 kb on + strand, within CA264_03470 at 810.126 kb on + strand at 810.161 kb on + strand at 810.164 kb on + strand at 810.165 kb on - strand at 810.165 kb on - strand at 810.169 kb on + strand at 810.169 kb on + strand at 810.170 kb on - strand at 810.170 kb on - strand at 810.276 kb on - strand at 810.297 kb on + strand at 810.298 kb on - strand at 810.298 kb on - strand at 810.316 kb on - strand at 810.316 kb on - strand at 810.423 kb on + strand at 810.423 kb on + strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.427 kb on + strand at 810.434 kb on + strand at 810.435 kb on - strand at 810.446 kb on - strand at 810.489 kb on + strand at 810.490 kb on - strand at 810.526 kb on + strand at 810.526 kb on + strand at 810.527 kb on - strand at 810.533 kb on + strand at 810.597 kb on - strand, within CA264_03475 at 810.635 kb on + strand, within CA264_03475 at 810.670 kb on - strand, within CA264_03475 at 811.019 kb on - strand, within CA264_03475 at 811.019 kb on - strand, within CA264_03475 at 811.048 kb on + strand, within CA264_03475 at 811.055 kb on + strand, within CA264_03475 at 811.055 kb on + strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.114 kb on - strand, within CA264_03475 at 811.360 kb on + strand at 811.360 kb on + strand at 811.360 kb on + strand at 811.361 kb on - strand at 811.361 kb on - strand at 811.374 kb on + strand at 811.397 kb on + strand at 811.403 kb on + strand at 811.403 kb on + strand at 811.471 kb on - strand at 811.471 kb on - strand at 811.479 kb on + strand at 811.480 kb on - strand at 811.564 kb on - strand, within CA264_03480 at 811.641 kb on - strand, within CA264_03480 at 811.742 kb on + strand, within CA264_03480 at 811.762 kb on - strand, within CA264_03480 at 811.925 kb on - strand, within CA264_03480 at 811.983 kb on + strand, within CA264_03480 at 811.983 kb on + strand, within CA264_03480 at 811.983 kb on + strand, within CA264_03480 at 811.984 kb on - strand, within CA264_03480 at 811.984 kb on - strand, within CA264_03480 at 811.989 kb on - strand, within CA264_03480 at 812.024 kb on - strand, within CA264_03480 at 812.024 kb on - strand, within CA264_03480 at 812.041 kb on - strand, within CA264_03480 at 812.067 kb on - strand, within CA264_03480 at 812.161 kb on + strand at 812.161 kb on + strand at 812.173 kb on + strand at 812.174 kb on - strand at 812.184 kb on + strand at 812.184 kb on + strand at 812.185 kb on - strand at 812.186 kb on + strand at 812.186 kb on + strand at 812.186 kb on + strand at 812.186 kb on + strand at 812.187 kb on - strand at 812.187 kb on - strand at 812.211 kb on - strand at 812.217 kb on - strand at 812.219 kb on + strand at 812.277 kb on + strand at 812.278 kb on - strand at 812.281 kb on - strand at 812.316 kb on + strand at 812.335 kb on + strand at 812.344 kb on - strand at 812.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 809,589 + CA264_03470 0.28 -0.6 809,605 + CA264_03470 0.30 -2.3 809,683 - CA264_03470 0.41 +0.3 809,709 + CA264_03470 0.44 -0.3 809,710 - CA264_03470 0.44 -0.0 809,765 - CA264_03470 0.51 -0.7 809,904 + CA264_03470 0.69 -0.4 810,126 + -0.5 810,161 + +0.9 810,164 + -0.7 810,165 - -0.1 810,165 - -0.4 810,169 + +0.1 810,169 + +0.4 810,170 - +0.6 810,170 - -0.0 810,276 - -0.5 810,297 + +0.7 810,298 - -0.2 810,298 - -0.1 810,316 - -0.5 810,316 - -0.6 810,423 + -0.3 810,423 + -0.2 810,424 - +0.2 810,424 - +0.4 810,424 - -0.3 810,424 - -0.2 810,424 - -0.8 810,427 + -0.0 810,434 + -0.2 810,435 - -0.1 810,446 - -0.6 810,489 + +0.0 810,490 - +0.4 810,526 + +0.6 810,526 + -0.3 810,527 - -0.7 810,533 + +0.1 810,597 - CA264_03475 0.12 -1.5 810,635 + CA264_03475 0.17 -0.5 810,670 - CA264_03475 0.21 +1.1 811,019 - CA264_03475 0.61 -1.0 811,019 - CA264_03475 0.61 +0.4 811,048 + CA264_03475 0.64 -1.2 811,055 + CA264_03475 0.65 -1.2 811,055 + CA264_03475 0.65 -1.7 811,056 - CA264_03475 0.65 +1.5 811,056 - CA264_03475 0.65 +1.2 811,056 - CA264_03475 0.65 -0.8 811,114 - CA264_03475 0.71 -0.3 811,360 + +0.3 811,360 + +0.1 811,360 + -0.2 811,361 - +0.7 811,361 - +0.4 811,374 + -1.8 811,397 + +0.0 811,403 + +0.2 811,403 + -0.9 811,471 - -0.1 811,471 - +0.2 811,479 + -0.3 811,480 - +0.1 811,564 - CA264_03480 0.17 -0.5 811,641 - CA264_03480 0.27 -0.4 811,742 + CA264_03480 0.41 +0.6 811,762 - CA264_03480 0.44 -0.1 811,925 - CA264_03480 0.66 -0.2 811,983 + CA264_03480 0.74 -0.4 811,983 + CA264_03480 0.74 -0.2 811,983 + CA264_03480 0.74 +0.3 811,984 - CA264_03480 0.74 -0.2 811,984 - CA264_03480 0.74 -0.0 811,989 - CA264_03480 0.75 -0.9 812,024 - CA264_03480 0.80 -0.5 812,024 - CA264_03480 0.80 +0.1 812,041 - CA264_03480 0.82 +0.5 812,067 - CA264_03480 0.85 +1.5 812,161 + -0.5 812,161 + +0.4 812,173 + -0.3 812,174 - -0.1 812,184 + +0.3 812,184 + +0.0 812,185 - +1.0 812,186 + -0.4 812,186 + -0.1 812,186 + -0.0 812,186 + -0.4 812,187 - +0.2 812,187 - -0.2 812,211 - -1.8 812,217 - -1.8 812,219 + -1.1 812,277 + +0.9 812,278 - +0.9 812,281 - +0.1 812,316 + -0.3 812,335 + -0.8 812,344 - -0.9 812,354 - -0.5
Or see this region's nucleotide sequence