Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03315 and CA264_03320 overlap by 4 nucleotides CA264_03320 and CA264_03325 are separated by 248 nucleotides CA264_03325 and CA264_03330 are separated by 147 nucleotides
CA264_03315: CA264_03315 - hypothetical protein, at 777,696 to 778,994
_03315
CA264_03320: CA264_03320 - hypothetical protein, at 778,991 to 780,139
_03320
CA264_03325: CA264_03325 - hypothetical protein, at 780,388 to 780,597
_03325
CA264_03330: CA264_03330 - peptide-methionine (R)-S-oxide reductase, at 780,745 to 781,200
_03330
Position (kb) 778
779
780
781 Strain fitness (log2 ratio) -2
-1
0
1
2 at 778.065 kb on + strand, within CA264_03315 at 778.065 kb on + strand, within CA264_03315 at 778.066 kb on - strand, within CA264_03315 at 778.066 kb on - strand, within CA264_03315 at 778.066 kb on - strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.068 kb on - strand, within CA264_03315 at 778.068 kb on - strand, within CA264_03315 at 778.111 kb on + strand, within CA264_03315 at 778.270 kb on + strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.334 kb on + strand, within CA264_03315 at 778.342 kb on - strand, within CA264_03315 at 778.363 kb on - strand, within CA264_03315 at 778.419 kb on + strand, within CA264_03315 at 778.419 kb on + strand at 778.435 kb on - strand, within CA264_03315 at 778.438 kb on - strand, within CA264_03315 at 778.489 kb on - strand, within CA264_03315 at 778.565 kb on + strand, within CA264_03315 at 778.570 kb on + strand, within CA264_03315 at 778.571 kb on - strand, within CA264_03315 at 778.602 kb on + strand, within CA264_03315 at 778.602 kb on + strand, within CA264_03315 at 778.602 kb on + strand, within CA264_03315 at 778.603 kb on - strand, within CA264_03315 at 778.603 kb on - strand, within CA264_03315 at 778.638 kb on - strand, within CA264_03315 at 778.641 kb on + strand, within CA264_03315 at 778.642 kb on - strand, within CA264_03315 at 778.642 kb on - strand, within CA264_03315 at 778.668 kb on + strand, within CA264_03315 at 778.669 kb on - strand, within CA264_03315 at 778.750 kb on - strand, within CA264_03315 at 778.806 kb on - strand, within CA264_03315 at 778.824 kb on + strand, within CA264_03315 at 778.824 kb on + strand, within CA264_03315 at 778.944 kb on + strand at 778.945 kb on - strand at 778.972 kb on + strand at 778.973 kb on - strand at 778.992 kb on + strand at 778.993 kb on - strand at 779.269 kb on - strand, within CA264_03320 at 779.416 kb on + strand, within CA264_03320 at 779.512 kb on + strand, within CA264_03320 at 779.540 kb on - strand, within CA264_03320 at 779.540 kb on - strand, within CA264_03320 at 779.715 kb on - strand, within CA264_03320 at 779.860 kb on - strand, within CA264_03320 at 780.166 kb on + strand at 780.166 kb on + strand at 780.166 kb on + strand at 780.169 kb on + strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.191 kb on - strand at 780.214 kb on - strand at 780.220 kb on + strand at 780.323 kb on + strand at 780.324 kb on - strand at 780.338 kb on + strand at 780.339 kb on - strand at 780.339 kb on - strand at 780.342 kb on + strand at 780.354 kb on - strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.364 kb on + strand at 780.364 kb on + strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.372 kb on - strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.378 kb on - strand at 780.379 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.387 kb on - strand at 780.472 kb on + strand, within CA264_03325 at 780.473 kb on - strand, within CA264_03325 at 780.566 kb on - strand, within CA264_03325 at 780.586 kb on + strand at 780.634 kb on - strand at 780.643 kb on - strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.657 kb on + strand at 780.657 kb on + strand at 780.658 kb on - strand at 780.658 kb on - strand at 780.668 kb on + strand at 780.668 kb on + strand at 780.677 kb on + strand at 780.685 kb on - strand at 780.700 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.713 kb on + strand at 780.713 kb on + strand at 780.714 kb on - strand at 780.792 kb on - strand, within CA264_03330 at 780.903 kb on - strand, within CA264_03330 at 781.040 kb on + strand, within CA264_03330 at 781.050 kb on + strand, within CA264_03330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 778,065 + CA264_03315 0.28 +0.9 778,065 + CA264_03315 0.28 +0.1 778,066 - CA264_03315 0.28 +0.3 778,066 - CA264_03315 0.28 -0.1 778,066 - CA264_03315 0.28 -1.0 778,067 + CA264_03315 0.29 +0.1 778,067 + CA264_03315 0.29 +0.1 778,067 + CA264_03315 0.29 -0.9 778,067 + CA264_03315 0.29 +0.5 778,067 + CA264_03315 0.29 +0.4 778,067 + CA264_03315 0.29 -0.3 778,068 - CA264_03315 0.29 +0.2 778,068 - CA264_03315 0.29 -0.1 778,111 + CA264_03315 0.32 +0.0 778,270 + CA264_03315 0.44 -0.1 778,271 - CA264_03315 0.44 -0.8 778,271 - CA264_03315 0.44 +0.9 778,271 - CA264_03315 0.44 -0.0 778,271 - CA264_03315 0.44 -0.2 778,271 - CA264_03315 0.44 +0.4 778,271 - CA264_03315 0.44 +0.9 778,271 - CA264_03315 0.44 -0.6 778,334 + CA264_03315 0.49 -0.6 778,342 - CA264_03315 0.50 -0.1 778,363 - CA264_03315 0.51 -0.0 778,419 + CA264_03315 0.56 -0.4 778,419 + -0.4 778,435 - CA264_03315 0.57 +0.2 778,438 - CA264_03315 0.57 +0.1 778,489 - CA264_03315 0.61 -0.7 778,565 + CA264_03315 0.67 -0.2 778,570 + CA264_03315 0.67 +0.4 778,571 - CA264_03315 0.67 +0.2 778,602 + CA264_03315 0.70 +0.6 778,602 + CA264_03315 0.70 +0.7 778,602 + CA264_03315 0.70 -0.4 778,603 - CA264_03315 0.70 +0.1 778,603 - CA264_03315 0.70 -0.0 778,638 - CA264_03315 0.73 +2.1 778,641 + CA264_03315 0.73 -1.9 778,642 - CA264_03315 0.73 +0.3 778,642 - CA264_03315 0.73 +1.1 778,668 + CA264_03315 0.75 -0.2 778,669 - CA264_03315 0.75 -0.7 778,750 - CA264_03315 0.81 +1.0 778,806 - CA264_03315 0.85 -0.5 778,824 + CA264_03315 0.87 +1.3 778,824 + CA264_03315 0.87 +0.2 778,944 + +1.9 778,945 - +1.6 778,972 + -0.0 778,973 - +0.4 778,992 + -0.6 778,993 - +0.4 779,269 - CA264_03320 0.24 -0.2 779,416 + CA264_03320 0.37 +0.5 779,512 + CA264_03320 0.45 +0.8 779,540 - CA264_03320 0.48 -0.9 779,540 - CA264_03320 0.48 +2.6 779,715 - CA264_03320 0.63 -0.3 779,860 - CA264_03320 0.76 +0.2 780,166 + +0.1 780,166 + +0.6 780,166 + +0.1 780,169 + +1.1 780,170 - +0.8 780,170 - -1.0 780,191 - -0.0 780,214 - +1.6 780,220 + +0.3 780,323 + +0.2 780,324 - +0.6 780,338 + -0.2 780,339 - -0.3 780,339 - -1.3 780,342 + +0.2 780,354 - +0.1 780,358 + -0.1 780,358 + +0.1 780,358 + -0.9 780,358 + -1.1 780,358 + -0.5 780,362 + +0.5 780,362 + +0.9 780,362 + -1.3 780,362 + -0.6 780,363 - +0.4 780,363 - -0.7 780,363 - +0.2 780,363 - -0.4 780,364 + +0.3 780,364 + -0.5 780,365 - +0.2 780,365 - -1.0 780,365 - +0.3 780,372 - +1.7 780,377 + +0.1 780,377 + -0.7 780,377 + -0.5 780,378 - -1.0 780,379 + +0.7 780,384 + -0.5 780,384 + -0.6 780,384 + -1.2 780,384 + +0.7 780,387 - +0.6 780,472 + CA264_03325 0.40 +0.1 780,473 - CA264_03325 0.40 +0.2 780,566 - CA264_03325 0.85 +0.2 780,586 + -0.1 780,634 - +0.2 780,643 - +1.9 780,647 + -0.5 780,647 + -0.9 780,647 + -0.3 780,647 + +0.3 780,647 + +0.2 780,647 + -0.9 780,648 - -0.1 780,648 - +0.0 780,648 - +0.9 780,657 + -0.5 780,657 + -0.1 780,658 - -0.1 780,658 - -0.4 780,668 + -1.3 780,668 + -0.4 780,677 + -0.4 780,685 - +0.3 780,700 + -1.0 780,702 + +1.0 780,702 + -0.5 780,702 + -1.5 780,713 + +0.1 780,713 + -0.1 780,714 - -0.1 780,792 - CA264_03330 0.10 -0.7 780,903 - CA264_03330 0.35 +0.7 781,040 + CA264_03330 0.65 -1.1 781,050 + CA264_03330 0.67 +0.8
Or see this region's nucleotide sequence