Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02915 and CA264_02920 are separated by 298 nucleotides CA264_02920 and CA264_02925 overlap by 17 nucleotides CA264_02925 and CA264_02930 are separated by 358 nucleotides
CA264_02915: CA264_02915 - hypothetical protein, at 663,439 to 663,819
_02915
CA264_02920: CA264_02920 - response regulator, at 664,118 to 664,525
_02920
CA264_02925: CA264_02925 - hypothetical protein, at 664,509 to 667,886
_02925
CA264_02930: CA264_02930 - copper-translocating P-type ATPase, at 668,245 to 670,479
_02930
Position (kb) 664
665
666
667
668 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 663.548 kb on + strand, within CA264_02915 at 663.548 kb on + strand, within CA264_02915 at 663.548 kb on + strand, within CA264_02915 at 663.602 kb on + strand, within CA264_02915 at 663.603 kb on - strand, within CA264_02915 at 663.660 kb on + strand, within CA264_02915 at 663.665 kb on + strand, within CA264_02915 at 663.798 kb on + strand at 663.798 kb on + strand at 663.798 kb on + strand at 663.825 kb on + strand at 663.825 kb on + strand at 663.826 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.832 kb on + strand at 663.833 kb on - strand at 663.869 kb on + strand at 663.870 kb on - strand at 663.874 kb on - strand at 663.874 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 664.087 kb on + strand at 664.088 kb on - strand at 664.128 kb on + strand at 664.129 kb on - strand at 664.187 kb on + strand, within CA264_02920 at 664.188 kb on - strand, within CA264_02920 at 664.225 kb on + strand, within CA264_02920 at 664.246 kb on + strand, within CA264_02920 at 664.247 kb on - strand, within CA264_02920 at 664.280 kb on + strand, within CA264_02920 at 664.291 kb on - strand, within CA264_02920 at 664.333 kb on + strand, within CA264_02920 at 664.334 kb on - strand, within CA264_02920 at 664.345 kb on + strand, within CA264_02920 at 664.346 kb on - strand, within CA264_02920 at 664.482 kb on - strand, within CA264_02920 at 664.528 kb on + strand at 664.534 kb on - strand at 664.605 kb on + strand at 664.606 kb on - strand at 664.624 kb on - strand at 664.673 kb on + strand at 664.676 kb on - strand at 664.713 kb on + strand at 664.735 kb on - strand at 664.751 kb on - strand at 664.759 kb on - strand at 664.765 kb on + strand at 664.766 kb on - strand at 664.773 kb on - strand at 664.808 kb on - strand at 664.813 kb on - strand at 664.867 kb on - strand, within CA264_02925 at 664.867 kb on - strand, within CA264_02925 at 664.971 kb on + strand, within CA264_02925 at 664.983 kb on + strand, within CA264_02925 at 665.175 kb on - strand, within CA264_02925 at 665.176 kb on + strand, within CA264_02925 at 665.176 kb on + strand, within CA264_02925 at 665.254 kb on + strand, within CA264_02925 at 665.255 kb on - strand, within CA264_02925 at 665.325 kb on - strand, within CA264_02925 at 665.325 kb on - strand, within CA264_02925 at 665.332 kb on - strand, within CA264_02925 at 665.400 kb on - strand, within CA264_02925 at 665.406 kb on - strand, within CA264_02925 at 665.415 kb on + strand, within CA264_02925 at 665.530 kb on + strand, within CA264_02925 at 665.580 kb on - strand, within CA264_02925 at 665.613 kb on + strand, within CA264_02925 at 665.613 kb on + strand, within CA264_02925 at 665.617 kb on - strand, within CA264_02925 at 665.797 kb on + strand, within CA264_02925 at 665.887 kb on + strand, within CA264_02925 at 665.887 kb on + strand, within CA264_02925 at 665.888 kb on - strand, within CA264_02925 at 665.896 kb on + strand, within CA264_02925 at 665.896 kb on + strand, within CA264_02925 at 665.921 kb on + strand, within CA264_02925 at 666.109 kb on + strand, within CA264_02925 at 666.237 kb on - strand, within CA264_02925 at 666.311 kb on - strand, within CA264_02925 at 666.417 kb on - strand, within CA264_02925 at 666.502 kb on + strand, within CA264_02925 at 666.614 kb on - strand, within CA264_02925 at 666.671 kb on - strand, within CA264_02925 at 666.707 kb on - strand, within CA264_02925 at 666.824 kb on + strand, within CA264_02925 at 666.824 kb on + strand, within CA264_02925 at 666.825 kb on - strand, within CA264_02925 at 666.825 kb on - strand, within CA264_02925 at 666.941 kb on + strand, within CA264_02925 at 666.942 kb on - strand, within CA264_02925 at 667.016 kb on + strand, within CA264_02925 at 667.017 kb on - strand, within CA264_02925 at 667.019 kb on - strand, within CA264_02925 at 667.019 kb on - strand, within CA264_02925 at 667.024 kb on + strand, within CA264_02925 at 667.025 kb on - strand, within CA264_02925 at 667.032 kb on + strand, within CA264_02925 at 667.062 kb on - strand, within CA264_02925 at 667.078 kb on + strand, within CA264_02925 at 667.120 kb on + strand, within CA264_02925 at 667.152 kb on + strand, within CA264_02925 at 667.153 kb on - strand, within CA264_02925 at 667.231 kb on + strand, within CA264_02925 at 667.232 kb on - strand, within CA264_02925 at 667.232 kb on - strand, within CA264_02925 at 667.280 kb on - strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.449 kb on + strand, within CA264_02925 at 667.475 kb on + strand, within CA264_02925 at 667.476 kb on - strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.557 kb on + strand at 667.558 kb on - strand at 667.633 kb on + strand at 667.634 kb on - strand at 667.634 kb on - strand at 667.670 kb on + strand at 667.670 kb on + strand at 667.671 kb on - strand at 667.725 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.728 kb on - strand at 667.728 kb on - strand at 667.732 kb on + strand at 667.732 kb on + strand at 667.733 kb on - strand at 667.757 kb on + strand at 667.757 kb on + strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.763 kb on - strand at 667.812 kb on + strand at 667.819 kb on - strand at 667.820 kb on + strand at 667.821 kb on - strand at 667.896 kb on - strand at 667.896 kb on - strand at 667.899 kb on + strand at 667.899 kb on + strand at 667.900 kb on - strand at 667.935 kb on + strand at 667.982 kb on - strand at 668.030 kb on - strand at 668.030 kb on - strand at 668.073 kb on - strand at 668.073 kb on - strand at 668.153 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.169 kb on - strand at 668.175 kb on - strand at 668.189 kb on + strand at 668.230 kb on + strand at 668.254 kb on - strand at 668.255 kb on + strand at 668.255 kb on + strand at 668.256 kb on - strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.373 kb on - strand at 668.456 kb on + strand at 668.456 kb on + strand at 668.601 kb on + strand, within CA264_02930 at 668.607 kb on + strand, within CA264_02930 at 668.633 kb on + strand, within CA264_02930 at 668.634 kb on - strand, within CA264_02930 at 668.677 kb on - strand, within CA264_02930 at 668.721 kb on + strand, within CA264_02930 at 668.769 kb on + strand, within CA264_02930 at 668.825 kb on - strand, within CA264_02930 at 668.853 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.856 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 663,548 + CA264_02915 0.29 -0.1 663,548 + CA264_02915 0.29 -0.2 663,548 + CA264_02915 0.29 -0.8 663,602 + CA264_02915 0.43 -0.7 663,603 - CA264_02915 0.43 +0.1 663,660 + CA264_02915 0.58 -0.0 663,665 + CA264_02915 0.59 -0.1 663,798 + -0.2 663,798 + -0.7 663,798 + -0.2 663,825 + -1.6 663,825 + -0.3 663,826 - -0.4 663,828 - +0.3 663,828 - -0.6 663,828 - -1.3 663,828 - +0.4 663,832 + -0.4 663,833 - +0.2 663,869 + -0.0 663,870 - +0.3 663,874 - -0.5 663,874 - -0.2 663,880 - +0.1 663,880 - +0.3 663,880 - +0.3 663,880 - +0.7 664,087 + +0.4 664,088 - -1.1 664,128 + -0.9 664,129 - -0.2 664,187 + CA264_02920 0.17 -0.2 664,188 - CA264_02920 0.17 -0.5 664,225 + CA264_02920 0.26 +0.2 664,246 + CA264_02920 0.31 -0.3 664,247 - CA264_02920 0.32 +0.2 664,280 + CA264_02920 0.40 +1.2 664,291 - CA264_02920 0.42 +1.2 664,333 + CA264_02920 0.53 +0.9 664,334 - CA264_02920 0.53 +0.2 664,345 + CA264_02920 0.56 -0.5 664,346 - CA264_02920 0.56 +0.6 664,482 - CA264_02920 0.89 -0.1 664,528 + +3.4 664,534 - -1.8 664,605 + -0.3 664,606 - +0.0 664,624 - -0.3 664,673 + +0.1 664,676 - -0.2 664,713 + +2.2 664,735 - -1.6 664,751 - -1.1 664,759 - -0.5 664,765 + -1.1 664,766 - -1.6 664,773 - -1.2 664,808 - -0.7 664,813 - -0.7 664,867 - CA264_02925 0.11 -1.6 664,867 - CA264_02925 0.11 -0.1 664,971 + CA264_02925 0.14 -1.2 664,983 + CA264_02925 0.14 +0.6 665,175 - CA264_02925 0.20 -0.6 665,176 + CA264_02925 0.20 -0.0 665,176 + CA264_02925 0.20 -0.0 665,254 + CA264_02925 0.22 -0.3 665,255 - CA264_02925 0.22 +0.6 665,325 - CA264_02925 0.24 +0.5 665,325 - CA264_02925 0.24 -0.5 665,332 - CA264_02925 0.24 +0.1 665,400 - CA264_02925 0.26 -0.5 665,406 - CA264_02925 0.27 -0.5 665,415 + CA264_02925 0.27 +0.4 665,530 + CA264_02925 0.30 -0.3 665,580 - CA264_02925 0.32 -1.0 665,613 + CA264_02925 0.33 -0.2 665,613 + CA264_02925 0.33 -0.2 665,617 - CA264_02925 0.33 -0.0 665,797 + CA264_02925 0.38 -0.5 665,887 + CA264_02925 0.41 -0.2 665,887 + CA264_02925 0.41 +0.6 665,888 - CA264_02925 0.41 -0.2 665,896 + CA264_02925 0.41 +0.0 665,896 + CA264_02925 0.41 +0.2 665,921 + CA264_02925 0.42 -0.4 666,109 + CA264_02925 0.47 +0.6 666,237 - CA264_02925 0.51 +0.1 666,311 - CA264_02925 0.53 +0.3 666,417 - CA264_02925 0.56 -0.1 666,502 + CA264_02925 0.59 -0.7 666,614 - CA264_02925 0.62 -1.3 666,671 - CA264_02925 0.64 -0.0 666,707 - CA264_02925 0.65 -0.4 666,824 + CA264_02925 0.69 -0.1 666,824 + CA264_02925 0.69 -0.8 666,825 - CA264_02925 0.69 -1.2 666,825 - CA264_02925 0.69 -0.3 666,941 + CA264_02925 0.72 +0.2 666,942 - CA264_02925 0.72 +0.9 667,016 + CA264_02925 0.74 +0.3 667,017 - CA264_02925 0.74 +0.8 667,019 - CA264_02925 0.74 +0.6 667,019 - CA264_02925 0.74 -0.6 667,024 + CA264_02925 0.74 -0.3 667,025 - CA264_02925 0.74 -0.2 667,032 + CA264_02925 0.75 +0.2 667,062 - CA264_02925 0.76 -0.2 667,078 + CA264_02925 0.76 +1.0 667,120 + CA264_02925 0.77 -0.8 667,152 + CA264_02925 0.78 -0.1 667,153 - CA264_02925 0.78 -0.1 667,231 + CA264_02925 0.81 -0.5 667,232 - CA264_02925 0.81 -0.5 667,232 - CA264_02925 0.81 +1.2 667,280 - CA264_02925 0.82 -1.9 667,414 + CA264_02925 0.86 -1.3 667,414 + CA264_02925 0.86 -0.4 667,449 + CA264_02925 0.87 -0.4 667,475 + CA264_02925 0.88 -2.0 667,476 - CA264_02925 0.88 -0.2 667,477 + CA264_02925 0.88 +0.0 667,477 + CA264_02925 0.88 +0.0 667,477 + CA264_02925 0.88 +1.7 667,477 + CA264_02925 0.88 +0.9 667,477 + CA264_02925 0.88 -0.5 667,478 - CA264_02925 0.88 -0.7 667,478 - CA264_02925 0.88 +2.2 667,478 - CA264_02925 0.88 -0.8 667,481 - CA264_02925 0.88 -1.0 667,481 - CA264_02925 0.88 -1.9 667,481 - CA264_02925 0.88 +0.5 667,481 - CA264_02925 0.88 -0.7 667,557 + +1.7 667,558 - -0.0 667,633 + -0.3 667,634 - -0.4 667,634 - -0.3 667,670 + +0.0 667,670 + +0.1 667,671 - +0.2 667,725 + -0.3 667,727 + +0.3 667,727 + -0.5 667,727 + -1.5 667,728 - +0.4 667,728 - +0.2 667,732 + +0.2 667,732 + -0.4 667,733 - -1.1 667,757 + +0.2 667,757 + -0.1 667,758 - -0.5 667,758 - -0.5 667,758 - +0.1 667,758 - -1.0 667,763 - -0.2 667,812 + -0.3 667,819 - -2.1 667,820 + -1.0 667,821 - -0.1 667,896 - +0.6 667,896 - -1.8 667,899 + -0.3 667,899 + -0.0 667,900 - -0.3 667,935 + +0.0 667,982 - +2.2 668,030 - -0.3 668,030 - -1.7 668,073 - +0.2 668,073 - -0.8 668,153 + -0.2 668,160 + +0.8 668,160 + +1.0 668,160 + -0.1 668,160 + -0.1 668,160 + +0.7 668,164 + -0.2 668,164 + +1.3 668,164 + -0.9 668,164 + +0.4 668,169 - -0.2 668,175 - +0.0 668,189 + -0.7 668,230 + +0.1 668,254 - -0.7 668,255 + -1.0 668,255 + -1.0 668,256 - -0.0 668,262 + +0.7 668,262 + +0.3 668,262 + -0.1 668,373 - +0.3 668,456 + +0.5 668,456 + -0.4 668,601 + CA264_02930 0.16 -1.0 668,607 + CA264_02930 0.16 -0.4 668,633 + CA264_02930 0.17 -0.2 668,634 - CA264_02930 0.17 +0.0 668,677 - CA264_02930 0.19 +0.4 668,721 + CA264_02930 0.21 +1.2 668,769 + CA264_02930 0.23 -0.3 668,825 - CA264_02930 0.26 -0.0 668,853 + CA264_02930 0.27 -0.3 668,855 + CA264_02930 0.27 +1.2 668,855 + CA264_02930 0.27 -0.1 668,856 - CA264_02930 0.27 +0.0 668,866 - CA264_02930 0.28 -0.2 668,866 - CA264_02930 0.28 -0.1 668,866 - CA264_02930 0.28 +0.1
Or see this region's nucleotide sequence