Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01810 and CA264_01815 are separated by 16 nucleotides CA264_01815 and CA264_01820 are separated by 2 nucleotides CA264_01820 and CA264_01825 are separated by 185 nucleotides CA264_01825 and CA264_01830 are separated by 170 nucleotides
CA264_01810: CA264_01810 - hypothetical protein, at 426,285 to 426,956
_01810
CA264_01815: CA264_01815 - N-acetyltransferase, at 426,973 to 427,254
_01815
CA264_01820: CA264_01820 - hypothetical protein, at 427,257 to 427,988
_01820
CA264_01825: CA264_01825 - hypothetical protein, at 428,174 to 428,425
_01825
CA264_01830: CA264_01830 - Bcr/CflA family drug resistance efflux transporter, at 428,596 to 429,846
_01830
Position (kb) 427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 426.262 kb on + strand at 426.263 kb on - strand at 426.281 kb on + strand at 426.281 kb on + strand at 426.287 kb on - strand at 426.287 kb on - strand at 426.295 kb on + strand at 426.296 kb on - strand at 426.307 kb on - strand at 426.380 kb on + strand, within CA264_01810 at 426.396 kb on + strand, within CA264_01810 at 426.420 kb on + strand, within CA264_01810 at 426.432 kb on - strand, within CA264_01810 at 426.495 kb on + strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.772 kb on - strand, within CA264_01810 at 426.943 kb on - strand at 426.943 kb on - strand at 426.943 kb on - strand at 426.945 kb on - strand at 426.967 kb on - strand at 426.968 kb on + strand at 426.969 kb on - strand at 426.993 kb on - strand at 427.049 kb on + strand, within CA264_01815 at 427.050 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.274 kb on - strand at 427.274 kb on - strand at 427.351 kb on + strand, within CA264_01820 at 427.351 kb on + strand, within CA264_01820 at 427.366 kb on - strand, within CA264_01820 at 427.467 kb on - strand, within CA264_01820 at 427.474 kb on + strand, within CA264_01820 at 427.532 kb on + strand, within CA264_01820 at 427.532 kb on + strand, within CA264_01820 at 427.689 kb on + strand, within CA264_01820 at 427.689 kb on + strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.723 kb on + strand, within CA264_01820 at 427.814 kb on + strand, within CA264_01820 at 427.899 kb on - strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.942 kb on - strand at 427.960 kb on + strand at 427.984 kb on - strand at 427.984 kb on - strand at 427.999 kb on + strand at 428.000 kb on - strand at 428.050 kb on - strand at 428.234 kb on + strand, within CA264_01825 at 428.474 kb on + strand at 428.506 kb on - strand at 428.506 kb on - strand at 428.531 kb on - strand at 428.531 kb on - strand at 428.594 kb on - strand at 428.594 kb on - strand at 428.594 kb on - strand at 428.596 kb on - strand at 428.612 kb on - strand at 428.620 kb on - strand at 428.629 kb on - strand at 428.674 kb on + strand at 428.716 kb on - strand at 428.812 kb on - strand, within CA264_01830 at 428.872 kb on - strand, within CA264_01830 at 428.907 kb on + strand, within CA264_01830 at 428.907 kb on + strand, within CA264_01830 at 428.908 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 426,262 + -0.1 426,263 - +0.1 426,281 + -0.2 426,281 + +1.7 426,287 - -0.5 426,287 - -0.2 426,295 + -0.6 426,296 - -0.1 426,307 - -0.1 426,380 + CA264_01810 0.14 -0.1 426,396 + CA264_01810 0.17 +0.4 426,420 + CA264_01810 0.20 -1.0 426,432 - CA264_01810 0.22 -0.4 426,495 + CA264_01810 0.31 -0.3 426,496 - CA264_01810 0.31 -0.6 426,496 - CA264_01810 0.31 -1.4 426,599 - CA264_01810 0.47 +0.4 426,599 - CA264_01810 0.47 -1.6 426,602 - CA264_01810 0.47 +0.0 426,602 - CA264_01810 0.47 -0.1 426,772 - CA264_01810 0.72 +0.5 426,943 - -0.4 426,943 - +0.1 426,943 - +0.5 426,945 - +0.5 426,967 - -0.8 426,968 + +0.4 426,969 - +0.2 426,993 - -1.0 427,049 + CA264_01815 0.27 +0.6 427,050 - CA264_01815 0.27 -0.6 427,131 - CA264_01815 0.56 +1.5 427,131 - CA264_01815 0.56 +0.7 427,131 - CA264_01815 0.56 +0.4 427,274 - +0.6 427,274 - +0.1 427,351 + CA264_01820 0.13 -0.4 427,351 + CA264_01820 0.13 -2.2 427,366 - CA264_01820 0.15 -2.6 427,467 - CA264_01820 0.29 +0.1 427,474 + CA264_01820 0.30 +1.0 427,532 + CA264_01820 0.38 -2.3 427,532 + CA264_01820 0.38 -2.4 427,689 + CA264_01820 0.59 -0.8 427,689 + CA264_01820 0.59 -1.8 427,690 - CA264_01820 0.59 -0.1 427,690 - CA264_01820 0.59 +0.2 427,723 + CA264_01820 0.64 -1.1 427,814 + CA264_01820 0.76 -2.2 427,899 - CA264_01820 0.88 -0.8 427,900 + CA264_01820 0.88 -2.9 427,900 + CA264_01820 0.88 -1.1 427,900 + CA264_01820 0.88 +1.2 427,900 + CA264_01820 0.88 +0.6 427,942 - -0.2 427,960 + -1.7 427,984 - +0.7 427,984 - -1.5 427,999 + +0.6 428,000 - -0.9 428,050 - +0.3 428,234 + CA264_01825 0.24 +0.2 428,474 + -0.4 428,506 - -0.8 428,506 - -0.4 428,531 - -1.3 428,531 - -0.8 428,594 - -1.1 428,594 - +1.0 428,594 - +0.4 428,596 - -1.3 428,612 - -0.7 428,620 - -0.4 428,629 - -0.2 428,674 + +0.2 428,716 - -0.4 428,812 - CA264_01830 0.17 +0.0 428,872 - CA264_01830 0.22 -0.0 428,907 + CA264_01830 0.25 -0.5 428,907 + CA264_01830 0.25 +0.6 428,908 - CA264_01830 0.25 -0.7 428,910 - CA264_01830 0.25 -0.4 428,910 - CA264_01830 0.25 -0.0 428,910 - CA264_01830 0.25 -0.1
Or see this region's nucleotide sequence