Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01695 and CA264_01700 are separated by 26 nucleotides CA264_01700 and CA264_01705 are separated by 157 nucleotides CA264_01705 and CA264_01710 are separated by 195 nucleotides CA264_01710 and CA264_01715 are separated by 62 nucleotides
CA264_01695: CA264_01695 - glutathionylspermidine synthase, at 397,194 to 398,372
_01695
CA264_01700: CA264_01700 - type I methionyl aminopeptidase, at 398,399 to 399,157
_01700
CA264_01705: CA264_01705 - NADH-quinone oxidoreductase subunit H, at 399,315 to 400,418
_01705
CA264_01710: CA264_01710 - coenzyme A pyrophosphatase, at 400,614 to 401,261
_01710
CA264_01715: CA264_01715 - 4Fe-4S ferredoxin, at 401,324 to 401,926
_01715
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 398.327 kb on + strand at 398.328 kb on - strand at 398.328 kb on - strand at 398.331 kb on - strand at 398.337 kb on - strand at 398.371 kb on - strand at 398.406 kb on + strand at 398.406 kb on + strand at 398.483 kb on + strand, within CA264_01700 at 398.483 kb on + strand, within CA264_01700 at 398.484 kb on - strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.494 kb on - strand, within CA264_01700 at 398.494 kb on - strand, within CA264_01700 at 398.498 kb on - strand, within CA264_01700 at 398.506 kb on + strand, within CA264_01700 at 398.593 kb on + strand, within CA264_01700 at 398.594 kb on - strand, within CA264_01700 at 398.594 kb on - strand, within CA264_01700 at 398.630 kb on - strand, within CA264_01700 at 398.694 kb on + strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.729 kb on - strand, within CA264_01700 at 398.861 kb on - strand, within CA264_01700 at 398.880 kb on + strand, within CA264_01700 at 398.881 kb on - strand, within CA264_01700 at 398.884 kb on + strand, within CA264_01700 at 398.884 kb on + strand, within CA264_01700 at 398.884 kb on + strand, within CA264_01700 at 398.885 kb on - strand, within CA264_01700 at 399.000 kb on + strand, within CA264_01700 at 399.001 kb on - strand, within CA264_01700 at 399.029 kb on + strand, within CA264_01700 at 399.031 kb on + strand, within CA264_01700 at 399.060 kb on + strand, within CA264_01700 at 399.060 kb on + strand, within CA264_01700 at 399.061 kb on - strand, within CA264_01700 at 399.063 kb on + strand, within CA264_01700 at 399.080 kb on + strand, within CA264_01700 at 399.080 kb on + strand, within CA264_01700 at 399.081 kb on - strand, within CA264_01700 at 399.081 kb on - strand, within CA264_01700 at 399.085 kb on - strand at 399.109 kb on + strand at 399.109 kb on + strand at 399.112 kb on - strand at 399.154 kb on - strand at 399.184 kb on + strand at 399.199 kb on - strand at 399.199 kb on - strand at 399.246 kb on - strand at 399.259 kb on + strand at 399.270 kb on + strand at 399.274 kb on + strand at 399.297 kb on + strand at 399.315 kb on - strand at 399.315 kb on - strand at 399.315 kb on - strand at 399.315 kb on - strand at 399.338 kb on - strand at 399.398 kb on + strand at 399.488 kb on + strand, within CA264_01705 at 399.494 kb on - strand, within CA264_01705 at 399.553 kb on + strand, within CA264_01705 at 399.591 kb on - strand, within CA264_01705 at 399.614 kb on - strand, within CA264_01705 at 399.683 kb on + strand, within CA264_01705 at 399.693 kb on + strand, within CA264_01705 at 399.693 kb on + strand, within CA264_01705 at 399.694 kb on - strand, within CA264_01705 at 399.764 kb on - strand, within CA264_01705 at 399.889 kb on + strand, within CA264_01705 at 399.890 kb on - strand, within CA264_01705 at 399.895 kb on + strand, within CA264_01705 at 399.896 kb on - strand, within CA264_01705 at 399.899 kb on + strand, within CA264_01705 at 399.920 kb on + strand, within CA264_01705 at 399.924 kb on - strand, within CA264_01705 at 399.924 kb on - strand, within CA264_01705 at 399.933 kb on - strand, within CA264_01705 at 399.933 kb on - strand, within CA264_01705 at 399.948 kb on - strand, within CA264_01705 at 400.103 kb on + strand, within CA264_01705 at 400.103 kb on + strand, within CA264_01705 at 400.104 kb on - strand, within CA264_01705 at 400.107 kb on - strand, within CA264_01705 at 400.198 kb on - strand, within CA264_01705 at 400.234 kb on + strand, within CA264_01705 at 400.235 kb on - strand, within CA264_01705 at 400.235 kb on - strand, within CA264_01705 at 400.298 kb on - strand, within CA264_01705 at 400.416 kb on + strand at 400.416 kb on + strand at 400.422 kb on - strand at 400.450 kb on - strand at 400.456 kb on - strand at 400.456 kb on - strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.496 kb on - strand at 400.507 kb on + strand at 400.508 kb on - strand at 400.510 kb on - strand at 400.535 kb on + strand at 400.597 kb on - strand at 400.597 kb on - strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.660 kb on + strand at 400.757 kb on - strand, within CA264_01710 at 400.785 kb on - strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.925 kb on + strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 401.013 kb on + strand, within CA264_01710 at 401.015 kb on + strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.018 kb on - strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.133 kb on - strand at 401.157 kb on + strand, within CA264_01710 at 401.158 kb on - strand, within CA264_01710 at 401.177 kb on + strand, within CA264_01710 at 401.178 kb on - strand, within CA264_01710 at 401.224 kb on + strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.228 kb on + strand at 401.368 kb on - strand at 401.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 398,327 + +0.6 398,328 - +1.2 398,328 - -0.2 398,331 - -0.9 398,337 - +0.4 398,371 - +1.5 398,406 + -0.2 398,406 + -0.4 398,483 + CA264_01700 0.11 +0.3 398,483 + CA264_01700 0.11 +0.2 398,484 - CA264_01700 0.11 +0.3 398,493 + CA264_01700 0.12 -0.6 398,493 + CA264_01700 0.12 -1.3 398,493 + CA264_01700 0.12 -0.1 398,493 + CA264_01700 0.12 +0.4 398,493 + CA264_01700 0.12 -1.3 398,493 + CA264_01700 0.12 +0.1 398,494 - CA264_01700 0.13 -0.7 398,494 - CA264_01700 0.13 -0.5 398,498 - CA264_01700 0.13 +0.2 398,506 + CA264_01700 0.14 +0.2 398,593 + CA264_01700 0.26 +0.5 398,594 - CA264_01700 0.26 -0.2 398,594 - CA264_01700 0.26 +2.2 398,630 - CA264_01700 0.30 +0.2 398,694 + CA264_01700 0.39 -0.1 398,695 - CA264_01700 0.39 -0.9 398,695 - CA264_01700 0.39 -0.4 398,695 - CA264_01700 0.39 -0.3 398,695 - CA264_01700 0.39 -0.1 398,729 - CA264_01700 0.43 +0.7 398,861 - CA264_01700 0.61 -0.3 398,880 + CA264_01700 0.63 +0.4 398,881 - CA264_01700 0.64 -0.3 398,884 + CA264_01700 0.64 +0.1 398,884 + CA264_01700 0.64 -0.3 398,884 + CA264_01700 0.64 +0.6 398,885 - CA264_01700 0.64 +1.2 399,000 + CA264_01700 0.79 +0.6 399,001 - CA264_01700 0.79 -0.6 399,029 + CA264_01700 0.83 -0.3 399,031 + CA264_01700 0.83 +0.1 399,060 + CA264_01700 0.87 +0.1 399,060 + CA264_01700 0.87 +0.2 399,061 - CA264_01700 0.87 -0.3 399,063 + CA264_01700 0.87 -0.7 399,080 + CA264_01700 0.90 -0.0 399,080 + CA264_01700 0.90 -0.3 399,081 - CA264_01700 0.90 +0.6 399,081 - CA264_01700 0.90 -0.5 399,085 - -0.4 399,109 + +0.8 399,109 + -0.0 399,112 - +0.4 399,154 - -0.9 399,184 + +1.3 399,199 - -0.4 399,199 - +0.3 399,246 - +0.6 399,259 + -1.2 399,270 + +0.1 399,274 + -2.5 399,297 + -0.3 399,315 - -0.1 399,315 - -0.2 399,315 - +0.7 399,315 - -0.4 399,338 - -0.7 399,398 + -0.5 399,488 + CA264_01705 0.16 -1.6 399,494 - CA264_01705 0.16 -0.6 399,553 + CA264_01705 0.22 -1.8 399,591 - CA264_01705 0.25 +0.4 399,614 - CA264_01705 0.27 -0.6 399,683 + CA264_01705 0.33 +0.2 399,693 + CA264_01705 0.34 -1.4 399,693 + CA264_01705 0.34 -0.7 399,694 - CA264_01705 0.34 -2.9 399,764 - CA264_01705 0.41 -1.4 399,889 + CA264_01705 0.52 -1.1 399,890 - CA264_01705 0.52 -0.6 399,895 + CA264_01705 0.53 -1.2 399,896 - CA264_01705 0.53 -0.0 399,899 + CA264_01705 0.53 -1.7 399,920 + CA264_01705 0.55 -0.7 399,924 - CA264_01705 0.55 -1.4 399,924 - CA264_01705 0.55 -0.5 399,933 - CA264_01705 0.56 -0.5 399,933 - CA264_01705 0.56 -0.2 399,948 - CA264_01705 0.57 -0.6 400,103 + CA264_01705 0.71 -0.3 400,103 + CA264_01705 0.71 -1.0 400,104 - CA264_01705 0.71 -0.9 400,107 - CA264_01705 0.72 -0.1 400,198 - CA264_01705 0.80 -0.1 400,234 + CA264_01705 0.83 -0.3 400,235 - CA264_01705 0.83 +0.9 400,235 - CA264_01705 0.83 -2.0 400,298 - CA264_01705 0.89 -2.0 400,416 + -0.3 400,416 + -1.2 400,422 - +0.7 400,450 - +0.2 400,456 - +1.3 400,456 - +0.4 400,460 + +0.4 400,460 + -0.1 400,460 + +0.3 400,460 + +0.3 400,461 - -0.4 400,461 - -0.3 400,461 - +1.0 400,461 - -0.6 400,462 + -0.0 400,462 + +0.5 400,462 + -1.0 400,496 - -0.0 400,507 + +0.9 400,508 - +0.0 400,510 - +0.4 400,535 + -0.5 400,597 - -0.5 400,597 - -0.5 400,633 + +0.0 400,633 + +0.8 400,633 + +0.5 400,637 + +1.2 400,637 + -0.0 400,637 + +1.4 400,637 + -0.1 400,660 + +0.6 400,757 - CA264_01710 0.22 -1.1 400,785 - CA264_01710 0.26 +0.2 400,849 + CA264_01710 0.36 +0.6 400,849 + CA264_01710 0.36 +0.0 400,925 + CA264_01710 0.48 +1.1 400,992 - CA264_01710 0.58 -0.6 400,992 - CA264_01710 0.58 -0.3 400,992 - CA264_01710 0.58 +0.6 401,013 + CA264_01710 0.62 -1.5 401,015 + CA264_01710 0.62 -0.4 401,016 - CA264_01710 0.62 -1.4 401,016 - CA264_01710 0.62 +0.2 401,018 - CA264_01710 0.62 -0.1 401,068 + CA264_01710 0.70 +0.6 401,068 + CA264_01710 0.70 -0.2 401,069 - CA264_01710 0.70 -0.5 401,069 - CA264_01710 0.70 +1.0 401,069 - CA264_01710 0.70 -0.0 401,074 + CA264_01710 0.71 -2.2 401,074 + CA264_01710 0.71 +0.3 401,074 + CA264_01710 0.71 -0.1 401,126 - CA264_01710 0.79 -0.6 401,126 - CA264_01710 0.79 +0.3 401,133 - +0.4 401,157 + CA264_01710 0.84 +1.7 401,158 - CA264_01710 0.84 -0.1 401,177 + CA264_01710 0.87 +0.5 401,178 - CA264_01710 0.87 -0.1 401,224 + -0.1 401,225 - -0.4 401,225 - +0.2 401,225 - -1.2 401,228 + -0.6 401,368 - +0.0 401,368 - +0.2
Or see this region's nucleotide sequence