Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01620 and CA264_01625 are separated by 196 nucleotides CA264_01625 and CA264_01630 are separated by 368 nucleotides
CA264_01620: CA264_01620 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 380,031 to 380,924
_01620
CA264_01625: CA264_01625 - hypothetical protein, at 381,121 to 381,732
_01625
CA264_01630: CA264_01630 - TonB dependent receptor, at 382,101 to 384,557
_01630
Position (kb) 381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 380.922 kb on + strand at 380.923 kb on - strand at 380.937 kb on + strand at 380.939 kb on + strand at 380.944 kb on - strand at 380.944 kb on - strand at 380.988 kb on - strand at 381.042 kb on - strand at 381.045 kb on + strand at 381.045 kb on + strand at 381.045 kb on + strand at 381.046 kb on - strand at 381.071 kb on - strand at 381.071 kb on - strand at 381.124 kb on + strand at 381.145 kb on - strand at 381.212 kb on + strand, within CA264_01625 at 381.212 kb on + strand, within CA264_01625 at 381.217 kb on + strand, within CA264_01625 at 381.218 kb on - strand, within CA264_01625 at 381.287 kb on - strand, within CA264_01625 at 381.357 kb on - strand, within CA264_01625 at 381.357 kb on - strand, within CA264_01625 at 381.378 kb on - strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.435 kb on - strand, within CA264_01625 at 381.435 kb on - strand, within CA264_01625 at 381.438 kb on + strand, within CA264_01625 at 381.439 kb on - strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.461 kb on + strand, within CA264_01625 at 381.462 kb on - strand, within CA264_01625 at 381.462 kb on - strand, within CA264_01625 at 381.524 kb on - strand, within CA264_01625 at 381.616 kb on + strand, within CA264_01625 at 381.616 kb on + strand, within CA264_01625 at 381.617 kb on - strand, within CA264_01625 at 381.739 kb on + strand at 381.739 kb on + strand at 381.739 kb on + strand at 381.740 kb on - strand at 381.740 kb on - strand at 381.749 kb on + strand at 381.754 kb on + strand at 381.755 kb on - strand at 381.767 kb on - strand at 381.790 kb on - strand at 381.814 kb on + strand at 381.935 kb on + strand at 381.935 kb on + strand at 381.935 kb on + strand at 381.936 kb on - strand at 381.936 kb on - strand at 381.963 kb on - strand at 381.965 kb on + strand at 381.965 kb on + strand at 382.017 kb on + strand at 382.017 kb on + strand at 382.020 kb on + strand at 382.021 kb on - strand at 382.041 kb on + strand at 382.041 kb on + strand at 382.042 kb on - strand at 382.044 kb on - strand at 382.075 kb on + strand at 382.083 kb on + strand at 382.096 kb on - strand at 382.175 kb on + strand at 382.204 kb on + strand at 382.204 kb on + strand at 382.204 kb on + strand at 382.285 kb on + strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.295 kb on + strand at 382.296 kb on - strand at 382.297 kb on + strand at 382.297 kb on + strand at 382.298 kb on - strand at 382.426 kb on + strand, within CA264_01630 at 382.441 kb on - strand, within CA264_01630 at 382.486 kb on + strand, within CA264_01630 at 382.487 kb on - strand, within CA264_01630 at 382.487 kb on - strand, within CA264_01630 at 382.490 kb on + strand, within CA264_01630 at 382.491 kb on - strand, within CA264_01630 at 382.492 kb on + strand, within CA264_01630 at 382.492 kb on + strand, within CA264_01630 at 382.493 kb on - strand, within CA264_01630 at 382.542 kb on + strand, within CA264_01630 at 382.543 kb on - strand, within CA264_01630 at 382.543 kb on - strand, within CA264_01630 at 382.543 kb on - strand, within CA264_01630
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 380,922 + -0.0 380,923 - +0.7 380,937 + -0.1 380,939 + -0.1 380,944 - -0.3 380,944 - -0.4 380,988 - -0.3 381,042 - +1.0 381,045 + +0.7 381,045 + -0.3 381,045 + +0.3 381,046 - +0.1 381,071 - -1.5 381,071 - +0.3 381,124 + -0.8 381,145 - -0.0 381,212 + CA264_01625 0.15 +0.3 381,212 + CA264_01625 0.15 -0.2 381,217 + CA264_01625 0.16 +0.4 381,218 - CA264_01625 0.16 +0.1 381,287 - CA264_01625 0.27 -1.3 381,357 - CA264_01625 0.39 +0.2 381,357 - CA264_01625 0.39 +0.2 381,378 - CA264_01625 0.42 +1.5 381,434 + CA264_01625 0.51 -0.1 381,434 + CA264_01625 0.51 -0.2 381,434 + CA264_01625 0.51 +0.1 381,434 + CA264_01625 0.51 -0.5 381,435 - CA264_01625 0.51 -1.1 381,435 - CA264_01625 0.51 -0.4 381,438 + CA264_01625 0.52 +1.0 381,439 - CA264_01625 0.52 -0.2 381,440 + CA264_01625 0.52 +0.3 381,440 + CA264_01625 0.52 -0.7 381,440 + CA264_01625 0.52 +1.2 381,440 + CA264_01625 0.52 +0.7 381,441 - CA264_01625 0.52 +1.8 381,441 - CA264_01625 0.52 +0.1 381,441 - CA264_01625 0.52 +0.6 381,441 - CA264_01625 0.52 -0.1 381,461 + CA264_01625 0.56 -0.6 381,462 - CA264_01625 0.56 -0.2 381,462 - CA264_01625 0.56 +0.6 381,524 - CA264_01625 0.66 +0.0 381,616 + CA264_01625 0.81 +0.1 381,616 + CA264_01625 0.81 -0.3 381,617 - CA264_01625 0.81 -2.3 381,739 + +0.8 381,739 + -0.1 381,739 + +0.5 381,740 - -0.2 381,740 - +0.4 381,749 + +1.7 381,754 + -0.1 381,755 - -0.6 381,767 - +0.3 381,790 - -0.3 381,814 + -0.1 381,935 + -0.3 381,935 + -0.2 381,935 + -0.2 381,936 - +0.7 381,936 - -0.1 381,963 - -0.6 381,965 + -1.3 381,965 + +0.5 382,017 + -0.8 382,017 + -0.1 382,020 + +0.1 382,021 - -0.3 382,041 + +0.4 382,041 + +0.2 382,042 - -0.0 382,044 - -0.3 382,075 + +0.2 382,083 + +0.2 382,096 - -0.4 382,175 + +1.2 382,204 + +0.4 382,204 + -0.3 382,204 + +0.2 382,285 + +0.8 382,286 - -0.3 382,286 - +0.6 382,295 + -1.2 382,296 - -0.1 382,297 + -0.8 382,297 + +0.2 382,298 - -0.1 382,426 + CA264_01630 0.13 -0.2 382,441 - CA264_01630 0.14 +0.1 382,486 + CA264_01630 0.16 -0.2 382,487 - CA264_01630 0.16 +0.5 382,487 - CA264_01630 0.16 -0.0 382,490 + CA264_01630 0.16 +0.1 382,491 - CA264_01630 0.16 -0.2 382,492 + CA264_01630 0.16 -0.8 382,492 + CA264_01630 0.16 -0.7 382,493 - CA264_01630 0.16 +0.1 382,542 + CA264_01630 0.18 -0.4 382,543 - CA264_01630 0.18 -0.2 382,543 - CA264_01630 0.18 -0.6 382,543 - CA264_01630 0.18 -0.9
Or see this region's nucleotide sequence