Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00290 and CA264_00295 are separated by 95 nucleotides CA264_00295 and CA264_00300 are separated by 176 nucleotides CA264_00300 and CA264_00305 are separated by 54 nucleotides CA264_00305 and CA264_00310 are separated by 97 nucleotides
CA264_00290: CA264_00290 - acyl-ACP desaturase, at 68,977 to 69,957
_00290
CA264_00295: CA264_00295 - hypothetical protein, at 70,053 to 70,334
_00295
CA264_00300: CA264_00300 - VWA domain-containing protein, at 70,511 to 71,611
_00300
CA264_00305: CA264_00305 - hypothetical protein, at 71,666 to 72,139
_00305
CA264_00310: CA264_00310 - magnesium chelatase, at 72,237 to 73,754
_00310
Position (kb)
70
71
72 Strain fitness (log2 ratio)
-2
-1
0
1 at 69.982 kb on + strand at 69.982 kb on + strand at 69.982 kb on + strand at 69.982 kb on + strand at 69.982 kb on + strand at 69.983 kb on - strand at 69.983 kb on - strand at 69.983 kb on - strand at 70.006 kb on + strand at 70.007 kb on - strand at 70.008 kb on + strand at 70.008 kb on + strand at 70.008 kb on + strand at 70.009 kb on - strand at 70.009 kb on - strand at 70.009 kb on - strand at 70.015 kb on + strand at 70.055 kb on - strand at 70.091 kb on - strand, within CA264_00295 at 70.097 kb on + strand, within CA264_00295 at 70.177 kb on + strand, within CA264_00295 at 70.180 kb on + strand, within CA264_00295 at 70.180 kb on + strand, within CA264_00295 at 70.181 kb on - strand, within CA264_00295 at 70.308 kb on + strand at 70.308 kb on + strand at 70.360 kb on + strand at 70.360 kb on + strand at 70.360 kb on + strand at 70.361 kb on - strand at 70.361 kb on - strand at 70.361 kb on - strand at 70.361 kb on - strand at 70.365 kb on + strand at 70.366 kb on - strand at 70.366 kb on - strand at 70.366 kb on - strand at 70.395 kb on + strand at 70.396 kb on - strand at 70.497 kb on + strand at 70.497 kb on + strand at 70.510 kb on + strand at 70.518 kb on + strand at 70.518 kb on + strand at 70.519 kb on - strand at 70.519 kb on - strand at 70.558 kb on + strand at 70.559 kb on - strand at 70.592 kb on - strand at 71.374 kb on + strand, within CA264_00300 at 71.375 kb on - strand, within CA264_00300 at 71.375 kb on - strand, within CA264_00300 at 71.688 kb on + strand at 71.688 kb on + strand at 71.751 kb on - strand, within CA264_00305 at 71.813 kb on - strand, within CA264_00305 at 71.817 kb on - strand, within CA264_00305 at 71.817 kb on - strand, within CA264_00305 at 71.923 kb on + strand, within CA264_00305 at 71.925 kb on + strand, within CA264_00305 at 71.926 kb on - strand, within CA264_00305 at 71.957 kb on + strand, within CA264_00305 at 71.992 kb on - strand, within CA264_00305 at 71.992 kb on - strand, within CA264_00305 at 71.996 kb on + strand, within CA264_00305 at 71.997 kb on - strand, within CA264_00305 at 71.998 kb on + strand, within CA264_00305 at 71.999 kb on - strand, within CA264_00305 at 71.999 kb on - strand, within CA264_00305 at 72.052 kb on - strand, within CA264_00305 at 72.185 kb on + strand at 72.234 kb on + strand at 72.244 kb on - strand at 72.278 kb on - strand at 72.296 kb on - strand at 72.325 kb on + strand at 72.326 kb on - strand at 72.436 kb on + strand, within CA264_00310 at 72.436 kb on + strand, within CA264_00310 at 72.436 kb on + strand, within CA264_00310 at 72.508 kb on + strand, within CA264_00310 at 72.525 kb on + strand, within CA264_00310 at 72.526 kb on - strand, within CA264_00310 at 72.526 kb on - strand, within CA264_00310 at 72.526 kb on - strand, within CA264_00310 at 72.526 kb on - strand, within CA264_00310 at 72.526 kb on - strand, within CA264_00310 at 72.527 kb on + strand, within CA264_00310 at 72.528 kb on - strand, within CA264_00310 at 72.528 kb on - strand, within CA264_00310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 69,982 + +0.0 69,982 + -0.7 69,982 + -0.3 69,982 + -0.1 69,982 + -1.2 69,983 - -0.2 69,983 - -0.6 69,983 - -0.4 70,006 + -0.2 70,007 - -1.1 70,008 + -1.3 70,008 + -1.0 70,008 + +0.5 70,009 - -0.1 70,009 - +0.2 70,009 - +0.4 70,015 + -0.9 70,055 - +0.1 70,091 - CA264_00295 0.13 -0.6 70,097 + CA264_00295 0.16 -0.2 70,177 + CA264_00295 0.44 -0.7 70,180 + CA264_00295 0.45 -0.1 70,180 + CA264_00295 0.45 +1.5 70,181 - CA264_00295 0.45 +0.2 70,308 + -0.0 70,308 + +1.0 70,360 + +0.8 70,360 + -0.1 70,360 + -0.4 70,361 - +1.6 70,361 - -0.2 70,361 - -0.5 70,361 - -0.0 70,365 + -0.7 70,366 - -1.4 70,366 - +0.1 70,366 - -1.3 70,395 + -0.8 70,396 - -0.3 70,497 + -0.6 70,497 + -1.4 70,510 + -0.6 70,518 + +0.2 70,518 + +0.4 70,519 - +0.1 70,519 - -0.5 70,558 + -0.8 70,559 - -0.1 70,592 - +0.1 71,374 + CA264_00300 0.78 +0.1 71,375 - CA264_00300 0.78 +0.0 71,375 - CA264_00300 0.78 -0.7 71,688 + -0.7 71,688 + -0.2 71,751 - CA264_00305 0.18 +0.5 71,813 - CA264_00305 0.31 -0.3 71,817 - CA264_00305 0.32 +0.1 71,817 - CA264_00305 0.32 -0.6 71,923 + CA264_00305 0.54 -0.5 71,925 + CA264_00305 0.55 -0.0 71,926 - CA264_00305 0.55 -0.5 71,957 + CA264_00305 0.61 -0.6 71,992 - CA264_00305 0.69 -0.0 71,992 - CA264_00305 0.69 +0.0 71,996 + CA264_00305 0.70 -0.9 71,997 - CA264_00305 0.70 -0.1 71,998 + CA264_00305 0.70 +0.2 71,999 - CA264_00305 0.70 +0.5 71,999 - CA264_00305 0.70 -0.5 72,052 - CA264_00305 0.81 +0.5 72,185 + -0.4 72,234 + -0.4 72,244 - +0.0 72,278 - -1.9 72,296 - -0.2 72,325 + -2.0 72,326 - +0.5 72,436 + CA264_00310 0.13 -1.0 72,436 + CA264_00310 0.13 +0.6 72,436 + CA264_00310 0.13 -0.0 72,508 + CA264_00310 0.18 +0.0 72,525 + CA264_00310 0.19 -0.6 72,526 - CA264_00310 0.19 -0.3 72,526 - CA264_00310 0.19 +0.4 72,526 - CA264_00310 0.19 -1.8 72,526 - CA264_00310 0.19 +0.5 72,526 - CA264_00310 0.19 -0.1 72,527 + CA264_00310 0.19 -0.1 72,528 - CA264_00310 0.19 +0.1 72,528 - CA264_00310 0.19 -0.0
Or see this region's nucleotide sequence