Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00040 and CA264_00045 are separated by 215 nucleotides CA264_00045 and CA264_00050 are separated by 221 nucleotides
CA264_00040: CA264_00040 - hypothetical protein, at 9,050 to 11,023
_00040
CA264_00045: CA264_00045 - endopeptidase La, at 11,239 to 13,728
_00045
CA264_00050: CA264_00050 - hypothetical protein, at 13,950 to 14,993
_00050
Position (kb)
11
12
13
14 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 10.282 kb on - strand, within CA264_00040 at 10.282 kb on - strand, within CA264_00040 at 10.295 kb on - strand, within CA264_00040 at 10.377 kb on - strand, within CA264_00040 at 10.377 kb on - strand, within CA264_00040 at 10.405 kb on - strand, within CA264_00040 at 10.486 kb on - strand, within CA264_00040 at 10.543 kb on - strand, within CA264_00040 at 10.543 kb on - strand, within CA264_00040 at 10.546 kb on - strand, within CA264_00040 at 10.546 kb on - strand, within CA264_00040 at 10.546 kb on - strand, within CA264_00040 at 10.564 kb on - strand, within CA264_00040 at 10.566 kb on + strand, within CA264_00040 at 10.567 kb on - strand, within CA264_00040 at 10.759 kb on - strand, within CA264_00040 at 10.789 kb on - strand, within CA264_00040 at 10.899 kb on - strand at 10.934 kb on - strand at 11.171 kb on + strand at 11.176 kb on - strand at 11.176 kb on - strand at 11.176 kb on - strand at 11.177 kb on + strand at 11.178 kb on - strand at 11.183 kb on + strand at 11.184 kb on - strand at 11.184 kb on - strand at 11.184 kb on - strand at 11.185 kb on + strand at 11.185 kb on + strand at 11.235 kb on - strand at 11.235 kb on - strand at 11.239 kb on - strand at 11.307 kb on - strand at 11.314 kb on - strand at 11.346 kb on + strand at 11.347 kb on - strand at 11.348 kb on + strand at 11.549 kb on - strand, within CA264_00045 at 11.652 kb on - strand, within CA264_00045 at 11.751 kb on + strand, within CA264_00045 at 11.929 kb on - strand, within CA264_00045 at 12.050 kb on + strand, within CA264_00045 at 12.099 kb on - strand, within CA264_00045 at 12.175 kb on - strand, within CA264_00045 at 12.175 kb on - strand, within CA264_00045 at 12.227 kb on - strand, within CA264_00045 at 12.274 kb on - strand, within CA264_00045 at 12.451 kb on - strand, within CA264_00045 at 12.608 kb on + strand, within CA264_00045 at 12.624 kb on + strand, within CA264_00045 at 12.709 kb on - strand, within CA264_00045 at 12.712 kb on + strand, within CA264_00045 at 12.712 kb on + strand, within CA264_00045 at 12.713 kb on - strand, within CA264_00045 at 12.728 kb on - strand, within CA264_00045 at 12.750 kb on + strand, within CA264_00045 at 12.751 kb on - strand, within CA264_00045 at 12.751 kb on - strand, within CA264_00045 at 12.801 kb on + strand, within CA264_00045 at 12.827 kb on - strand, within CA264_00045 at 12.937 kb on - strand, within CA264_00045 at 12.953 kb on - strand, within CA264_00045 at 12.953 kb on - strand, within CA264_00045 at 13.139 kb on + strand, within CA264_00045 at 13.193 kb on + strand, within CA264_00045 at 13.194 kb on - strand, within CA264_00045 at 13.611 kb on + strand at 13.625 kb on + strand at 13.759 kb on + strand at 13.760 kb on - strand at 13.849 kb on - strand at 13.849 kb on - strand at 13.857 kb on + strand at 13.857 kb on + strand at 13.919 kb on - strand at 13.930 kb on + strand at 13.930 kb on + strand at 13.936 kb on + strand at 13.936 kb on + strand at 13.967 kb on + strand at 13.970 kb on - strand at 13.970 kb on - strand at 13.973 kb on + strand at 13.973 kb on + strand at 13.997 kb on + strand at 14.119 kb on + strand, within CA264_00050 at 14.120 kb on - strand, within CA264_00050 at 14.176 kb on - strand, within CA264_00050 at 14.176 kb on - strand, within CA264_00050 at 14.176 kb on - strand, within CA264_00050 at 14.185 kb on - strand, within CA264_00050 at 14.258 kb on + strand, within CA264_00050 at 14.258 kb on + strand, within CA264_00050 at 14.260 kb on + strand, within CA264_00050 at 14.261 kb on - strand, within CA264_00050 at 14.265 kb on + strand, within CA264_00050 at 14.266 kb on - strand, within CA264_00050 at 14.318 kb on + strand, within CA264_00050 at 14.435 kb on - strand, within CA264_00050 at 14.441 kb on - strand, within CA264_00050 at 14.466 kb on - strand, within CA264_00050 at 14.504 kb on + strand, within CA264_00050 at 14.517 kb on + strand, within CA264_00050 at 14.525 kb on - strand, within CA264_00050 at 14.533 kb on - strand, within CA264_00050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 10,282 - CA264_00040 0.62 -0.7 10,282 - CA264_00040 0.62 -0.2 10,295 - CA264_00040 0.63 +1.2 10,377 - CA264_00040 0.67 -0.6 10,377 - CA264_00040 0.67 +0.3 10,405 - CA264_00040 0.69 +0.2 10,486 - CA264_00040 0.73 +0.5 10,543 - CA264_00040 0.76 +0.3 10,543 - CA264_00040 0.76 -0.4 10,546 - CA264_00040 0.76 +0.1 10,546 - CA264_00040 0.76 +1.0 10,546 - CA264_00040 0.76 -0.2 10,564 - CA264_00040 0.77 -0.1 10,566 + CA264_00040 0.77 -0.5 10,567 - CA264_00040 0.77 +0.2 10,759 - CA264_00040 0.87 +0.3 10,789 - CA264_00040 0.88 -0.0 10,899 - -0.0 10,934 - -0.5 11,171 + +0.2 11,176 - +0.5 11,176 - +0.4 11,176 - -0.2 11,177 + +1.3 11,178 - +0.6 11,183 + +1.2 11,184 - +1.0 11,184 - -0.9 11,184 - -0.4 11,185 + -0.3 11,185 + +0.3 11,235 - +0.0 11,235 - +1.3 11,239 - -0.1 11,307 - -0.3 11,314 - -0.4 11,346 + -0.4 11,347 - -1.0 11,348 + -0.7 11,549 - CA264_00045 0.12 -1.8 11,652 - CA264_00045 0.17 -1.4 11,751 + CA264_00045 0.21 -0.8 11,929 - CA264_00045 0.28 -1.6 12,050 + CA264_00045 0.33 -1.4 12,099 - CA264_00045 0.35 +0.7 12,175 - CA264_00045 0.38 -0.5 12,175 - CA264_00045 0.38 -1.1 12,227 - CA264_00045 0.40 -0.2 12,274 - CA264_00045 0.42 +0.4 12,451 - CA264_00045 0.49 -0.6 12,608 + CA264_00045 0.55 -1.0 12,624 + CA264_00045 0.56 +1.7 12,709 - CA264_00045 0.59 -0.1 12,712 + CA264_00045 0.59 -1.3 12,712 + CA264_00045 0.59 -0.0 12,713 - CA264_00045 0.59 -1.7 12,728 - CA264_00045 0.60 -1.6 12,750 + CA264_00045 0.61 -1.1 12,751 - CA264_00045 0.61 -1.4 12,751 - CA264_00045 0.61 -0.9 12,801 + CA264_00045 0.63 +0.5 12,827 - CA264_00045 0.64 -0.6 12,937 - CA264_00045 0.68 -0.7 12,953 - CA264_00045 0.69 -0.8 12,953 - CA264_00045 0.69 -0.6 13,139 + CA264_00045 0.76 -1.3 13,193 + CA264_00045 0.78 -1.5 13,194 - CA264_00045 0.79 -2.6 13,611 + -0.3 13,625 + -0.7 13,759 + -0.3 13,760 - -0.6 13,849 - -0.7 13,849 - -0.9 13,857 + -0.3 13,857 + -1.0 13,919 - -0.5 13,930 + +1.3 13,930 + -1.0 13,936 + -0.3 13,936 + -1.0 13,967 + +0.6 13,970 - -0.0 13,970 - -0.0 13,973 + +0.3 13,973 + +1.0 13,997 + +0.5 14,119 + CA264_00050 0.16 -0.0 14,120 - CA264_00050 0.16 -0.2 14,176 - CA264_00050 0.22 -0.0 14,176 - CA264_00050 0.22 +1.5 14,176 - CA264_00050 0.22 -0.2 14,185 - CA264_00050 0.23 +0.4 14,258 + CA264_00050 0.30 +0.1 14,258 + CA264_00050 0.30 -2.3 14,260 + CA264_00050 0.30 +0.1 14,261 - CA264_00050 0.30 +0.8 14,265 + CA264_00050 0.30 +2.3 14,266 - CA264_00050 0.30 -0.4 14,318 + CA264_00050 0.35 +0.0 14,435 - CA264_00050 0.46 -0.2 14,441 - CA264_00050 0.47 -0.5 14,466 - CA264_00050 0.49 +0.0 14,504 + CA264_00050 0.53 +0.8 14,517 + CA264_00050 0.54 -0.3 14,525 - CA264_00050 0.55 -0.1 14,533 - CA264_00050 0.56 -0.1
Or see this region's nucleotide sequence