Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00045

Experiment: m.b. Ceftazidime 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00040 and CA264_00045 are separated by 215 nucleotidesCA264_00045 and CA264_00050 are separated by 221 nucleotides CA264_00040: CA264_00040 - hypothetical protein, at 9,050 to 11,023 _00040 CA264_00045: CA264_00045 - endopeptidase La, at 11,239 to 13,728 _00045 CA264_00050: CA264_00050 - hypothetical protein, at 13,950 to 14,993 _00050 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -2 -1 0 1 2at 10.282 kb on - strand, within CA264_00040at 10.282 kb on - strand, within CA264_00040at 10.295 kb on - strand, within CA264_00040at 10.377 kb on - strand, within CA264_00040at 10.377 kb on - strand, within CA264_00040at 10.405 kb on - strand, within CA264_00040at 10.486 kb on - strand, within CA264_00040at 10.543 kb on - strand, within CA264_00040at 10.543 kb on - strand, within CA264_00040at 10.546 kb on - strand, within CA264_00040at 10.546 kb on - strand, within CA264_00040at 10.546 kb on - strand, within CA264_00040at 10.564 kb on - strand, within CA264_00040at 10.566 kb on + strand, within CA264_00040at 10.567 kb on - strand, within CA264_00040at 10.759 kb on - strand, within CA264_00040at 10.789 kb on - strand, within CA264_00040at 10.899 kb on - strandat 10.934 kb on - strandat 11.171 kb on + strandat 11.176 kb on - strandat 11.176 kb on - strandat 11.176 kb on - strandat 11.177 kb on + strandat 11.178 kb on - strandat 11.183 kb on + strandat 11.184 kb on - strandat 11.184 kb on - strandat 11.184 kb on - strandat 11.185 kb on + strandat 11.185 kb on + strandat 11.235 kb on - strandat 11.235 kb on - strandat 11.239 kb on - strandat 11.307 kb on - strandat 11.314 kb on - strandat 11.346 kb on + strandat 11.347 kb on - strandat 11.348 kb on + strandat 11.549 kb on - strand, within CA264_00045at 11.652 kb on - strand, within CA264_00045at 11.751 kb on + strand, within CA264_00045at 11.929 kb on - strand, within CA264_00045at 12.050 kb on + strand, within CA264_00045at 12.099 kb on - strand, within CA264_00045at 12.175 kb on - strand, within CA264_00045at 12.175 kb on - strand, within CA264_00045at 12.227 kb on - strand, within CA264_00045at 12.274 kb on - strand, within CA264_00045at 12.451 kb on - strand, within CA264_00045at 12.608 kb on + strand, within CA264_00045at 12.624 kb on + strand, within CA264_00045at 12.709 kb on - strand, within CA264_00045at 12.712 kb on + strand, within CA264_00045at 12.712 kb on + strand, within CA264_00045at 12.713 kb on - strand, within CA264_00045at 12.728 kb on - strand, within CA264_00045at 12.750 kb on + strand, within CA264_00045at 12.751 kb on - strand, within CA264_00045at 12.751 kb on - strand, within CA264_00045at 12.801 kb on + strand, within CA264_00045at 12.827 kb on - strand, within CA264_00045at 12.937 kb on - strand, within CA264_00045at 12.953 kb on - strand, within CA264_00045at 12.953 kb on - strand, within CA264_00045at 13.139 kb on + strand, within CA264_00045at 13.193 kb on + strand, within CA264_00045at 13.194 kb on - strand, within CA264_00045at 13.611 kb on + strandat 13.625 kb on + strandat 13.759 kb on + strandat 13.760 kb on - strandat 13.849 kb on - strandat 13.849 kb on - strandat 13.857 kb on + strandat 13.857 kb on + strandat 13.919 kb on - strandat 13.930 kb on + strandat 13.930 kb on + strandat 13.936 kb on + strandat 13.936 kb on + strandat 13.967 kb on + strandat 13.970 kb on - strandat 13.970 kb on - strandat 13.973 kb on + strandat 13.973 kb on + strandat 13.997 kb on + strandat 14.119 kb on + strand, within CA264_00050at 14.120 kb on - strand, within CA264_00050at 14.176 kb on - strand, within CA264_00050at 14.176 kb on - strand, within CA264_00050at 14.176 kb on - strand, within CA264_00050at 14.185 kb on - strand, within CA264_00050at 14.258 kb on + strand, within CA264_00050at 14.258 kb on + strand, within CA264_00050at 14.260 kb on + strand, within CA264_00050at 14.261 kb on - strand, within CA264_00050at 14.265 kb on + strand, within CA264_00050at 14.266 kb on - strand, within CA264_00050at 14.318 kb on + strand, within CA264_00050at 14.435 kb on - strand, within CA264_00050at 14.441 kb on - strand, within CA264_00050at 14.466 kb on - strand, within CA264_00050at 14.504 kb on + strand, within CA264_00050at 14.517 kb on + strand, within CA264_00050at 14.525 kb on - strand, within CA264_00050at 14.533 kb on - strand, within CA264_00050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
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10,282 - CA264_00040 0.62 -0.7
10,282 - CA264_00040 0.62 -0.2
10,295 - CA264_00040 0.63 +1.2
10,377 - CA264_00040 0.67 -0.6
10,377 - CA264_00040 0.67 +0.3
10,405 - CA264_00040 0.69 +0.2
10,486 - CA264_00040 0.73 +0.5
10,543 - CA264_00040 0.76 +0.3
10,543 - CA264_00040 0.76 -0.4
10,546 - CA264_00040 0.76 +0.1
10,546 - CA264_00040 0.76 +1.0
10,546 - CA264_00040 0.76 -0.2
10,564 - CA264_00040 0.77 -0.1
10,566 + CA264_00040 0.77 -0.5
10,567 - CA264_00040 0.77 +0.2
10,759 - CA264_00040 0.87 +0.3
10,789 - CA264_00040 0.88 -0.0
10,899 - -0.0
10,934 - -0.5
11,171 + +0.2
11,176 - +0.5
11,176 - +0.4
11,176 - -0.2
11,177 + +1.3
11,178 - +0.6
11,183 + +1.2
11,184 - +1.0
11,184 - -0.9
11,184 - -0.4
11,185 + -0.3
11,185 + +0.3
11,235 - +0.0
11,235 - +1.3
11,239 - -0.1
11,307 - -0.3
11,314 - -0.4
11,346 + -0.4
11,347 - -1.0
11,348 + -0.7
11,549 - CA264_00045 0.12 -1.8
11,652 - CA264_00045 0.17 -1.4
11,751 + CA264_00045 0.21 -0.8
11,929 - CA264_00045 0.28 -1.6
12,050 + CA264_00045 0.33 -1.4
12,099 - CA264_00045 0.35 +0.7
12,175 - CA264_00045 0.38 -0.5
12,175 - CA264_00045 0.38 -1.1
12,227 - CA264_00045 0.40 -0.2
12,274 - CA264_00045 0.42 +0.4
12,451 - CA264_00045 0.49 -0.6
12,608 + CA264_00045 0.55 -1.0
12,624 + CA264_00045 0.56 +1.7
12,709 - CA264_00045 0.59 -0.1
12,712 + CA264_00045 0.59 -1.3
12,712 + CA264_00045 0.59 -0.0
12,713 - CA264_00045 0.59 -1.7
12,728 - CA264_00045 0.60 -1.6
12,750 + CA264_00045 0.61 -1.1
12,751 - CA264_00045 0.61 -1.4
12,751 - CA264_00045 0.61 -0.9
12,801 + CA264_00045 0.63 +0.5
12,827 - CA264_00045 0.64 -0.6
12,937 - CA264_00045 0.68 -0.7
12,953 - CA264_00045 0.69 -0.8
12,953 - CA264_00045 0.69 -0.6
13,139 + CA264_00045 0.76 -1.3
13,193 + CA264_00045 0.78 -1.5
13,194 - CA264_00045 0.79 -2.6
13,611 + -0.3
13,625 + -0.7
13,759 + -0.3
13,760 - -0.6
13,849 - -0.7
13,849 - -0.9
13,857 + -0.3
13,857 + -1.0
13,919 - -0.5
13,930 + +1.3
13,930 + -1.0
13,936 + -0.3
13,936 + -1.0
13,967 + +0.6
13,970 - -0.0
13,970 - -0.0
13,973 + +0.3
13,973 + +1.0
13,997 + +0.5
14,119 + CA264_00050 0.16 -0.0
14,120 - CA264_00050 0.16 -0.2
14,176 - CA264_00050 0.22 -0.0
14,176 - CA264_00050 0.22 +1.5
14,176 - CA264_00050 0.22 -0.2
14,185 - CA264_00050 0.23 +0.4
14,258 + CA264_00050 0.30 +0.1
14,258 + CA264_00050 0.30 -2.3
14,260 + CA264_00050 0.30 +0.1
14,261 - CA264_00050 0.30 +0.8
14,265 + CA264_00050 0.30 +2.3
14,266 - CA264_00050 0.30 -0.4
14,318 + CA264_00050 0.35 +0.0
14,435 - CA264_00050 0.46 -0.2
14,441 - CA264_00050 0.47 -0.5
14,466 - CA264_00050 0.49 +0.0
14,504 + CA264_00050 0.53 +0.8
14,517 + CA264_00050 0.54 -0.3
14,525 - CA264_00050 0.55 -0.1
14,533 - CA264_00050 0.56 -0.1

Or see this region's nucleotide sequence