Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00020 and CA264_00025 are separated by 57 nucleotides CA264_00025 and CA264_00030 are separated by 15 nucleotides
CA264_00020: CA264_00020 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 4,390 to 5,541
_00020
CA264_00025: CA264_00025 - RIP metalloprotease RseP, at 5,599 to 6,912
_00025
CA264_00030: CA264_00030 - peptidoglycan-binding protein, at 6,928 to 8,055
_00030
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.540 kb on - strand at 5.548 kb on - strand at 5.566 kb on + strand at 5.606 kb on + strand at 5.607 kb on - strand at 5.713 kb on + strand at 6.011 kb on - strand, within CA264_00025 at 6.149 kb on - strand, within CA264_00025 at 6.149 kb on - strand, within CA264_00025 at 6.436 kb on - strand, within CA264_00025 at 6.443 kb on + strand, within CA264_00025 at 6.893 kb on + strand at 6.910 kb on + strand at 6.910 kb on + strand at 6.954 kb on - strand at 7.086 kb on + strand, within CA264_00030 at 7.090 kb on + strand, within CA264_00030 at 7.090 kb on + strand, within CA264_00030 at 7.090 kb on + strand, within CA264_00030 at 7.090 kb on + strand, within CA264_00030 at 7.090 kb on + strand, within CA264_00030 at 7.091 kb on - strand, within CA264_00030 at 7.091 kb on - strand, within CA264_00030 at 7.093 kb on + strand, within CA264_00030 at 7.093 kb on + strand, within CA264_00030 at 7.146 kb on + strand, within CA264_00030 at 7.146 kb on + strand, within CA264_00030 at 7.178 kb on - strand, within CA264_00030 at 7.352 kb on - strand, within CA264_00030 at 7.397 kb on + strand, within CA264_00030 at 7.397 kb on + strand, within CA264_00030 at 7.398 kb on - strand, within CA264_00030 at 7.399 kb on + strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.400 kb on - strand, within CA264_00030 at 7.437 kb on + strand, within CA264_00030 at 7.592 kb on - strand, within CA264_00030 at 7.599 kb on + strand, within CA264_00030 at 7.668 kb on - strand, within CA264_00030 at 7.807 kb on + strand, within CA264_00030 at 7.811 kb on - strand, within CA264_00030 at 7.811 kb on - strand, within CA264_00030 at 7.880 kb on - strand, within CA264_00030 at 7.903 kb on + strand, within CA264_00030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 5,540 - +0.1 5,548 - -0.3 5,566 + +0.7 5,606 + -1.7 5,607 - +0.5 5,713 + -0.5 6,011 - CA264_00025 0.31 -1.4 6,149 - CA264_00025 0.42 -1.4 6,149 - CA264_00025 0.42 -1.0 6,436 - CA264_00025 0.64 -0.5 6,443 + CA264_00025 0.64 -1.8 6,893 + +0.8 6,910 + -0.1 6,910 + -0.9 6,954 - -0.3 7,086 + CA264_00030 0.14 -0.9 7,090 + CA264_00030 0.14 +0.1 7,090 + CA264_00030 0.14 -1.7 7,090 + CA264_00030 0.14 -0.3 7,090 + CA264_00030 0.14 -0.8 7,090 + CA264_00030 0.14 -0.1 7,091 - CA264_00030 0.14 -1.2 7,091 - CA264_00030 0.14 -1.2 7,093 + CA264_00030 0.15 -0.5 7,093 + CA264_00030 0.15 +1.9 7,146 + CA264_00030 0.19 -1.2 7,146 + CA264_00030 0.19 -0.4 7,178 - CA264_00030 0.22 -1.7 7,352 - CA264_00030 0.38 -0.7 7,397 + CA264_00030 0.42 +0.5 7,397 + CA264_00030 0.42 -0.0 7,398 - CA264_00030 0.42 -0.0 7,399 + CA264_00030 0.42 -0.5 7,400 - CA264_00030 0.42 -1.9 7,400 - CA264_00030 0.42 +0.3 7,400 - CA264_00030 0.42 -1.3 7,400 - CA264_00030 0.42 -1.2 7,437 + CA264_00030 0.45 +0.5 7,592 - CA264_00030 0.59 -1.1 7,599 + CA264_00030 0.59 -0.1 7,668 - CA264_00030 0.66 -0.7 7,807 + CA264_00030 0.78 -0.0 7,811 - CA264_00030 0.78 -1.0 7,811 - CA264_00030 0.78 +0.0 7,880 - CA264_00030 0.84 -2.1 7,903 + CA264_00030 0.86 -0.8
Or see this region's nucleotide sequence