Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2315

Experiment: m.b. Lomefloxacin 0.0032 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2313 and B158DRAFT_2314 are separated by 19 nucleotidesB158DRAFT_2314 and B158DRAFT_2315 are separated by 105 nucleotidesB158DRAFT_2315 and B158DRAFT_2316 overlap by 1 nucleotides B158DRAFT_2313: B158DRAFT_2313 - Exopolyphosphatase, at 474,409 to 475,956 _2313 B158DRAFT_2314: B158DRAFT_2314 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 475,976 to 476,725 _2314 B158DRAFT_2315: B158DRAFT_2315 - proteobacterial dedicated sortase system response regulator, at 476,831 to 477,523 _2315 B158DRAFT_2316: B158DRAFT_2316 - Signal transduction histidine kinase, at 477,523 to 479,535 _2316 Position (kb) 476 477 478Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 475.853 kb on - strandat 475.889 kb on + strandat 475.889 kb on + strandat 475.897 kb on - strandat 475.897 kb on - strandat 475.907 kb on + strandat 475.907 kb on - strandat 475.915 kb on - strandat 475.915 kb on - strandat 475.998 kb on + strandat 476.013 kb on + strandat 476.082 kb on + strand, within B158DRAFT_2314at 476.082 kb on + strand, within B158DRAFT_2314at 476.082 kb on + strand, within B158DRAFT_2314at 476.082 kb on + strand, within B158DRAFT_2314at 476.082 kb on + strand, within B158DRAFT_2314at 476.082 kb on + strand, within B158DRAFT_2314at 476.082 kb on + strand, within B158DRAFT_2314at 476.090 kb on + strand, within B158DRAFT_2314at 476.090 kb on + strand, within B158DRAFT_2314at 476.090 kb on + strand, within B158DRAFT_2314at 476.090 kb on - strand, within B158DRAFT_2314at 476.090 kb on - strand, within B158DRAFT_2314at 476.090 kb on - strand, within B158DRAFT_2314at 476.090 kb on - strand, within B158DRAFT_2314at 476.098 kb on - strand, within B158DRAFT_2314at 476.169 kb on - strand, within B158DRAFT_2314at 476.177 kb on - strand, within B158DRAFT_2314at 476.192 kb on - strand, within B158DRAFT_2314at 476.216 kb on + strand, within B158DRAFT_2314at 476.224 kb on - strand, within B158DRAFT_2314at 476.224 kb on - strand, within B158DRAFT_2314at 476.224 kb on - strand, within B158DRAFT_2314at 476.349 kb on + strand, within B158DRAFT_2314at 476.357 kb on - strand, within B158DRAFT_2314at 476.357 kb on - strand, within B158DRAFT_2314at 476.357 kb on - strand, within B158DRAFT_2314at 476.429 kb on + strand, within B158DRAFT_2314at 476.437 kb on - strand, within B158DRAFT_2314at 476.439 kb on + strand, within B158DRAFT_2314at 476.505 kb on - strand, within B158DRAFT_2314at 476.644 kb on - strand, within B158DRAFT_2314at 476.755 kb on - strandat 476.806 kb on - strandat 476.819 kb on + strandat 476.913 kb on + strand, within B158DRAFT_2315at 476.928 kb on - strand, within B158DRAFT_2315at 476.951 kb on + strand, within B158DRAFT_2315at 476.972 kb on + strand, within B158DRAFT_2315at 476.998 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.086 kb on + strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.177 kb on - strand, within B158DRAFT_2315at 477.185 kb on - strand, within B158DRAFT_2315at 477.269 kb on + strand, within B158DRAFT_2315at 477.270 kb on + strand, within B158DRAFT_2315at 477.278 kb on - strand, within B158DRAFT_2315at 477.298 kb on - strand, within B158DRAFT_2315at 477.298 kb on - strand, within B158DRAFT_2315at 477.303 kb on + strand, within B158DRAFT_2315at 477.303 kb on + strand, within B158DRAFT_2315at 477.311 kb on - strand, within B158DRAFT_2315at 477.401 kb on + strand, within B158DRAFT_2315at 477.630 kb on + strandat 477.630 kb on - strandat 477.642 kb on + strandat 477.650 kb on + strandat 477.658 kb on - strandat 477.718 kb on - strandat 477.750 kb on + strand, within B158DRAFT_2316at 477.758 kb on - strand, within B158DRAFT_2316at 477.758 kb on - strand, within B158DRAFT_2316at 477.794 kb on + strand, within B158DRAFT_2316at 477.803 kb on + strand, within B158DRAFT_2316at 477.813 kb on + strand, within B158DRAFT_2316at 477.938 kb on + strand, within B158DRAFT_2316at 477.946 kb on - strand, within B158DRAFT_2316at 477.946 kb on - strand, within B158DRAFT_2316at 478.063 kb on - strand, within B158DRAFT_2316at 478.079 kb on - strand, within B158DRAFT_2316at 478.079 kb on - strand, within B158DRAFT_2316at 478.094 kb on + strand, within B158DRAFT_2316at 478.094 kb on + strand, within B158DRAFT_2316at 478.166 kb on + strand, within B158DRAFT_2316at 478.198 kb on + strand, within B158DRAFT_2316at 478.206 kb on - strand, within B158DRAFT_2316at 478.232 kb on + strand, within B158DRAFT_2316at 478.240 kb on - strand, within B158DRAFT_2316at 478.240 kb on - strand, within B158DRAFT_2316at 478.250 kb on - strand, within B158DRAFT_2316at 478.254 kb on + strand, within B158DRAFT_2316at 478.275 kb on + strand, within B158DRAFT_2316at 478.285 kb on + strand, within B158DRAFT_2316at 478.375 kb on + strand, within B158DRAFT_2316at 478.464 kb on - strand, within B158DRAFT_2316at 478.464 kb on - strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.480 kb on - strand, within B158DRAFT_2316at 478.480 kb on - strand, within B158DRAFT_2316at 478.491 kb on + strand, within B158DRAFT_2316at 478.499 kb on + strand, within B158DRAFT_2316at 478.499 kb on - strand, within B158DRAFT_2316at 478.499 kb on - strand, within B158DRAFT_2316at 478.507 kb on - strand, within B158DRAFT_2316

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0032 mM
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475,853 - -0.4
475,889 + -0.1
475,889 + +0.2
475,897 - -0.8
475,897 - -0.2
475,907 + -0.6
475,907 - -0.4
475,915 - +0.4
475,915 - -0.4
475,998 + -0.2
476,013 + +0.4
476,082 + B158DRAFT_2314 0.14 +0.6
476,082 + B158DRAFT_2314 0.14 +0.3
476,082 + B158DRAFT_2314 0.14 +1.8
476,082 + B158DRAFT_2314 0.14 +0.4
476,082 + B158DRAFT_2314 0.14 +0.0
476,082 + B158DRAFT_2314 0.14 -0.3
476,082 + B158DRAFT_2314 0.14 +0.2
476,090 + B158DRAFT_2314 0.15 +0.9
476,090 + B158DRAFT_2314 0.15 -0.1
476,090 + B158DRAFT_2314 0.15 +0.2
476,090 - B158DRAFT_2314 0.15 +0.6
476,090 - B158DRAFT_2314 0.15 -0.3
476,090 - B158DRAFT_2314 0.15 +0.1
476,090 - B158DRAFT_2314 0.15 -1.0
476,098 - B158DRAFT_2314 0.16 -0.0
476,169 - B158DRAFT_2314 0.26 -1.3
476,177 - B158DRAFT_2314 0.27 +0.1
476,192 - B158DRAFT_2314 0.29 -1.0
476,216 + B158DRAFT_2314 0.32 -0.5
476,224 - B158DRAFT_2314 0.33 +0.7
476,224 - B158DRAFT_2314 0.33 -0.6
476,224 - B158DRAFT_2314 0.33 +0.5
476,349 + B158DRAFT_2314 0.50 -0.6
476,357 - B158DRAFT_2314 0.51 -0.1
476,357 - B158DRAFT_2314 0.51 -0.2
476,357 - B158DRAFT_2314 0.51 +0.2
476,429 + B158DRAFT_2314 0.60 -0.6
476,437 - B158DRAFT_2314 0.61 +0.4
476,439 + B158DRAFT_2314 0.62 +0.2
476,505 - B158DRAFT_2314 0.71 +0.3
476,644 - B158DRAFT_2314 0.89 -0.3
476,755 - -1.3
476,806 - -0.5
476,819 + -0.2
476,913 + B158DRAFT_2315 0.12 -2.2
476,928 - B158DRAFT_2315 0.14 -1.0
476,951 + B158DRAFT_2315 0.17 -1.2
476,972 + B158DRAFT_2315 0.20 -2.7
476,998 + B158DRAFT_2315 0.24 -2.8
477,080 + B158DRAFT_2315 0.36 -2.9
477,080 + B158DRAFT_2315 0.36 -2.8
477,080 + B158DRAFT_2315 0.36 -2.4
477,080 + B158DRAFT_2315 0.36 -3.1
477,080 + B158DRAFT_2315 0.36 -2.2
477,080 + B158DRAFT_2315 0.36 -1.4
477,086 + B158DRAFT_2315 0.37 -2.1
477,088 - B158DRAFT_2315 0.37 -3.2
477,088 - B158DRAFT_2315 0.37 -3.4
477,088 - B158DRAFT_2315 0.37 -1.0
477,088 - B158DRAFT_2315 0.37 -3.6
477,088 - B158DRAFT_2315 0.37 -2.2
477,177 - B158DRAFT_2315 0.50 -2.6
477,185 - B158DRAFT_2315 0.51 +0.2
477,269 + B158DRAFT_2315 0.63 -1.0
477,270 + B158DRAFT_2315 0.63 -2.5
477,278 - B158DRAFT_2315 0.65 -2.9
477,298 - B158DRAFT_2315 0.67 -2.8
477,298 - B158DRAFT_2315 0.67 -1.9
477,303 + B158DRAFT_2315 0.68 +0.2
477,303 + B158DRAFT_2315 0.68 -3.9
477,311 - B158DRAFT_2315 0.69 -3.2
477,401 + B158DRAFT_2315 0.82 -1.8
477,630 + -2.0
477,630 - -1.3
477,642 + -0.7
477,650 + -0.7
477,658 - -3.7
477,718 - -0.8
477,750 + B158DRAFT_2316 0.11 -2.8
477,758 - B158DRAFT_2316 0.12 -3.0
477,758 - B158DRAFT_2316 0.12 -3.4
477,794 + B158DRAFT_2316 0.13 -1.9
477,803 + B158DRAFT_2316 0.14 -0.8
477,813 + B158DRAFT_2316 0.14 -4.5
477,938 + B158DRAFT_2316 0.21 -2.9
477,946 - B158DRAFT_2316 0.21 -3.6
477,946 - B158DRAFT_2316 0.21 -0.5
478,063 - B158DRAFT_2316 0.27 -2.6
478,079 - B158DRAFT_2316 0.28 -2.3
478,079 - B158DRAFT_2316 0.28 -1.8
478,094 + B158DRAFT_2316 0.28 -2.6
478,094 + B158DRAFT_2316 0.28 -2.9
478,166 + B158DRAFT_2316 0.32 -3.2
478,198 + B158DRAFT_2316 0.34 -3.0
478,206 - B158DRAFT_2316 0.34 -2.3
478,232 + B158DRAFT_2316 0.35 -3.3
478,240 - B158DRAFT_2316 0.36 -1.1
478,240 - B158DRAFT_2316 0.36 -3.0
478,250 - B158DRAFT_2316 0.36 -1.3
478,254 + B158DRAFT_2316 0.36 -1.8
478,275 + B158DRAFT_2316 0.37 -5.4
478,285 + B158DRAFT_2316 0.38 -2.1
478,375 + B158DRAFT_2316 0.42 -2.6
478,464 - B158DRAFT_2316 0.47 -2.3
478,464 - B158DRAFT_2316 0.47 -3.3
478,472 + B158DRAFT_2316 0.47 -4.0
478,472 + B158DRAFT_2316 0.47 -1.0
478,472 + B158DRAFT_2316 0.47 -2.9
478,472 + B158DRAFT_2316 0.47 -2.9
478,480 - B158DRAFT_2316 0.48 -3.9
478,480 - B158DRAFT_2316 0.48 -1.2
478,491 + B158DRAFT_2316 0.48 -2.8
478,499 + B158DRAFT_2316 0.48 -0.8
478,499 - B158DRAFT_2316 0.48 -1.9
478,499 - B158DRAFT_2316 0.48 -2.9
478,507 - B158DRAFT_2316 0.49 -1.0

Or see this region's nucleotide sequence