Experiment: m.b. Lomefloxacin 0.0032 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1637 and B158DRAFT_1638 are separated by 261 nucleotides B158DRAFT_1638 and B158DRAFT_1639 are separated by 147 nucleotides B158DRAFT_1639 and B158DRAFT_1640 are separated by 2 nucleotides
B158DRAFT_1637: B158DRAFT_1637 - Site-specific recombinase XerD, at 1,698,319 to 1,699,260
_1637
B158DRAFT_1638: B158DRAFT_1638 - Transposase and inactivated derivatives, TnpA family, at 1,699,522 to 1,702,494
_1638
B158DRAFT_1639: B158DRAFT_1639 - McrBC 5-methylcytosine restriction system component., at 1,702,642 to 1,703,475
_1639
B158DRAFT_1640: B158DRAFT_1640 - GTPase subunit of restriction endonuclease, at 1,703,478 to 1,705,655
_1640
Position (kb)
1699
1700
1701
1702
1703 Strain fitness (log2 ratio)
-1
0
1 at 1698.555 kb on - strand, within B158DRAFT_1637 at 1698.585 kb on - strand, within B158DRAFT_1637 at 1698.602 kb on - strand, within B158DRAFT_1637 at 1698.607 kb on + strand, within B158DRAFT_1637 at 1698.609 kb on - strand, within B158DRAFT_1637 at 1698.621 kb on + strand, within B158DRAFT_1637 at 1698.621 kb on + strand, within B158DRAFT_1637 at 1698.626 kb on + strand, within B158DRAFT_1637 at 1698.626 kb on + strand, within B158DRAFT_1637 at 1698.626 kb on + strand, within B158DRAFT_1637 at 1698.629 kb on - strand, within B158DRAFT_1637 at 1698.629 kb on - strand, within B158DRAFT_1637 at 1698.644 kb on - strand, within B158DRAFT_1637 at 1698.644 kb on - strand, within B158DRAFT_1637 at 1698.650 kb on + strand, within B158DRAFT_1637 at 1698.650 kb on + strand, within B158DRAFT_1637 at 1698.676 kb on - strand, within B158DRAFT_1637 at 1698.743 kb on + strand, within B158DRAFT_1637 at 1698.762 kb on + strand, within B158DRAFT_1637 at 1698.798 kb on + strand, within B158DRAFT_1637 at 1698.798 kb on + strand, within B158DRAFT_1637 at 1698.798 kb on + strand, within B158DRAFT_1637 at 1698.798 kb on + strand, within B158DRAFT_1637 at 1698.806 kb on - strand, within B158DRAFT_1637 at 1698.806 kb on - strand, within B158DRAFT_1637 at 1698.806 kb on - strand, within B158DRAFT_1637 at 1698.806 kb on - strand, within B158DRAFT_1637 at 1698.858 kb on + strand, within B158DRAFT_1637 at 1698.866 kb on - strand, within B158DRAFT_1637 at 1698.876 kb on + strand, within B158DRAFT_1637 at 1698.883 kb on + strand, within B158DRAFT_1637 at 1698.944 kb on + strand, within B158DRAFT_1637 at 1698.944 kb on + strand, within B158DRAFT_1637 at 1698.944 kb on + strand, within B158DRAFT_1637 at 1699.015 kb on + strand, within B158DRAFT_1637 at 1699.019 kb on + strand, within B158DRAFT_1637 at 1699.072 kb on + strand, within B158DRAFT_1637 at 1699.159 kb on + strand, within B158DRAFT_1637 at 1699.206 kb on - strand at 1699.206 kb on - strand at 1699.206 kb on - strand at 1699.206 kb on - strand at 1699.208 kb on + strand at 1699.288 kb on + strand at 1699.343 kb on + strand at 1699.343 kb on + strand at 1699.372 kb on - strand at 1699.400 kb on - strand at 1699.415 kb on + strand at 1699.416 kb on + strand at 1699.416 kb on + strand at 1699.423 kb on - strand at 1699.424 kb on - strand at 1699.439 kb on + strand at 1699.442 kb on + strand at 1699.442 kb on + strand at 1699.541 kb on + strand at 1699.560 kb on + strand at 1699.587 kb on - strand at 1699.587 kb on - strand at 1699.587 kb on - strand at 1699.611 kb on + strand at 1699.614 kb on - strand at 1699.630 kb on - strand at 1699.630 kb on - strand at 1699.646 kb on + strand at 1699.649 kb on - strand at 1699.654 kb on - strand at 1699.663 kb on - strand at 1699.663 kb on - strand at 1699.684 kb on + strand at 1699.804 kb on + strand at 1699.812 kb on - strand at 1699.907 kb on - strand, within B158DRAFT_1638 at 1699.907 kb on - strand, within B158DRAFT_1638 at 1699.975 kb on - strand, within B158DRAFT_1638 at 1699.997 kb on + strand, within B158DRAFT_1638 at 1699.997 kb on + strand, within B158DRAFT_1638 at 1699.997 kb on + strand, within B158DRAFT_1638 at 1700.007 kb on + strand, within B158DRAFT_1638 at 1700.037 kb on + strand, within B158DRAFT_1638 at 1700.112 kb on + strand, within B158DRAFT_1638 at 1700.192 kb on + strand, within B158DRAFT_1638 at 1700.279 kb on - strand, within B158DRAFT_1638 at 1700.279 kb on - strand, within B158DRAFT_1638 at 1700.432 kb on + strand, within B158DRAFT_1638 at 1700.432 kb on + strand, within B158DRAFT_1638 at 1700.440 kb on - strand, within B158DRAFT_1638 at 1700.440 kb on - strand, within B158DRAFT_1638 at 1700.474 kb on - strand, within B158DRAFT_1638 at 1700.530 kb on - strand, within B158DRAFT_1638 at 1700.551 kb on - strand, within B158DRAFT_1638 at 1700.707 kb on - strand, within B158DRAFT_1638 at 1700.707 kb on - strand, within B158DRAFT_1638 at 1700.713 kb on + strand, within B158DRAFT_1638 at 1700.726 kb on + strand, within B158DRAFT_1638 at 1700.726 kb on - strand, within B158DRAFT_1638 at 1700.942 kb on - strand, within B158DRAFT_1638 at 1700.980 kb on - strand, within B158DRAFT_1638 at 1700.989 kb on + strand, within B158DRAFT_1638 at 1700.997 kb on - strand, within B158DRAFT_1638 at 1700.997 kb on - strand, within B158DRAFT_1638 at 1700.999 kb on + strand, within B158DRAFT_1638 at 1700.999 kb on + strand, within B158DRAFT_1638 at 1701.007 kb on - strand, within B158DRAFT_1638 at 1701.007 kb on - strand, within B158DRAFT_1638 at 1701.014 kb on + strand, within B158DRAFT_1638 at 1701.021 kb on - strand, within B158DRAFT_1638 at 1701.022 kb on - strand, within B158DRAFT_1638 at 1701.055 kb on - strand, within B158DRAFT_1638 at 1701.117 kb on - strand, within B158DRAFT_1638 at 1701.179 kb on - strand, within B158DRAFT_1638 at 1701.179 kb on - strand, within B158DRAFT_1638 at 1701.181 kb on + strand, within B158DRAFT_1638 at 1701.181 kb on + strand, within B158DRAFT_1638 at 1701.189 kb on - strand, within B158DRAFT_1638 at 1701.191 kb on + strand, within B158DRAFT_1638 at 1701.214 kb on - strand, within B158DRAFT_1638 at 1701.227 kb on - strand, within B158DRAFT_1638 at 1701.295 kb on + strand, within B158DRAFT_1638 at 1701.306 kb on + strand, within B158DRAFT_1638 at 1701.383 kb on + strand, within B158DRAFT_1638 at 1701.383 kb on + strand, within B158DRAFT_1638 at 1701.511 kb on - strand, within B158DRAFT_1638 at 1701.601 kb on - strand, within B158DRAFT_1638 at 1701.649 kb on - strand, within B158DRAFT_1638 at 1701.764 kb on - strand, within B158DRAFT_1638 at 1701.785 kb on - strand, within B158DRAFT_1638 at 1701.795 kb on + strand, within B158DRAFT_1638 at 1701.795 kb on + strand, within B158DRAFT_1638 at 1701.830 kb on + strand, within B158DRAFT_1638 at 1701.838 kb on - strand, within B158DRAFT_1638 at 1701.987 kb on + strand, within B158DRAFT_1638 at 1702.032 kb on - strand, within B158DRAFT_1638 at 1702.040 kb on - strand, within B158DRAFT_1638 at 1702.256 kb on - strand at 1702.256 kb on - strand at 1702.256 kb on - strand at 1702.401 kb on + strand at 1702.556 kb on + strand at 1702.556 kb on + strand at 1702.562 kb on - strand at 1702.564 kb on - strand at 1702.600 kb on + strand at 1702.608 kb on - strand at 1702.608 kb on - strand at 1702.610 kb on + strand at 1702.737 kb on + strand, within B158DRAFT_1639 at 1703.054 kb on + strand, within B158DRAFT_1639 at 1703.054 kb on + strand, within B158DRAFT_1639 at 1703.054 kb on + strand, within B158DRAFT_1639 at 1703.062 kb on - strand, within B158DRAFT_1639 at 1703.062 kb on - strand, within B158DRAFT_1639 at 1703.081 kb on + strand, within B158DRAFT_1639 at 1703.164 kb on - strand, within B158DRAFT_1639 at 1703.265 kb on + strand, within B158DRAFT_1639 at 1703.327 kb on - strand, within B158DRAFT_1639 at 1703.345 kb on - strand, within B158DRAFT_1639 at 1703.369 kb on + strand, within B158DRAFT_1639 at 1703.382 kb on - strand, within B158DRAFT_1639 at 1703.477 kb on + strand at 1703.477 kb on + strand at 1703.484 kb on - strand at 1703.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0032 mM remove 1,698,555 - B158DRAFT_1637 0.25 -0.3 1,698,585 - B158DRAFT_1637 0.28 +0.3 1,698,602 - B158DRAFT_1637 0.30 -0.1 1,698,607 + B158DRAFT_1637 0.31 -0.7 1,698,609 - B158DRAFT_1637 0.31 -0.1 1,698,621 + B158DRAFT_1637 0.32 -0.2 1,698,621 + B158DRAFT_1637 0.32 +0.7 1,698,626 + B158DRAFT_1637 0.33 -0.5 1,698,626 + B158DRAFT_1637 0.33 -0.8 1,698,626 + B158DRAFT_1637 0.33 -0.8 1,698,629 - B158DRAFT_1637 0.33 +0.2 1,698,629 - B158DRAFT_1637 0.33 +0.0 1,698,644 - B158DRAFT_1637 0.35 +1.0 1,698,644 - B158DRAFT_1637 0.35 -0.1 1,698,650 + B158DRAFT_1637 0.35 -0.3 1,698,650 + B158DRAFT_1637 0.35 -0.2 1,698,676 - B158DRAFT_1637 0.38 +0.4 1,698,743 + B158DRAFT_1637 0.45 -0.1 1,698,762 + B158DRAFT_1637 0.47 +0.3 1,698,798 + B158DRAFT_1637 0.51 -0.4 1,698,798 + B158DRAFT_1637 0.51 +0.9 1,698,798 + B158DRAFT_1637 0.51 -0.2 1,698,798 + B158DRAFT_1637 0.51 +0.0 1,698,806 - B158DRAFT_1637 0.52 -0.6 1,698,806 - B158DRAFT_1637 0.52 -0.0 1,698,806 - B158DRAFT_1637 0.52 -0.2 1,698,806 - B158DRAFT_1637 0.52 -0.4 1,698,858 + B158DRAFT_1637 0.57 +0.0 1,698,866 - B158DRAFT_1637 0.58 +0.2 1,698,876 + B158DRAFT_1637 0.59 -0.9 1,698,883 + B158DRAFT_1637 0.60 -0.4 1,698,944 + B158DRAFT_1637 0.66 +0.1 1,698,944 + B158DRAFT_1637 0.66 -0.3 1,698,944 + B158DRAFT_1637 0.66 +0.4 1,699,015 + B158DRAFT_1637 0.74 -0.0 1,699,019 + B158DRAFT_1637 0.74 -0.1 1,699,072 + B158DRAFT_1637 0.80 -0.1 1,699,159 + B158DRAFT_1637 0.89 -0.5 1,699,206 - -0.3 1,699,206 - -0.2 1,699,206 - +0.0 1,699,206 - -0.1 1,699,208 + -0.4 1,699,288 + -0.2 1,699,343 + -0.1 1,699,343 + -0.0 1,699,372 - -0.2 1,699,400 - -0.1 1,699,415 + +0.3 1,699,416 + -0.5 1,699,416 + -0.1 1,699,423 - +0.1 1,699,424 - -0.2 1,699,439 + +0.0 1,699,442 + -0.1 1,699,442 + -0.2 1,699,541 + -0.3 1,699,560 + -0.1 1,699,587 - +0.3 1,699,587 - -0.5 1,699,587 - -0.9 1,699,611 + +0.6 1,699,614 - -0.2 1,699,630 - +0.2 1,699,630 - +0.0 1,699,646 + +0.0 1,699,649 - -0.4 1,699,654 - +0.1 1,699,663 - +0.4 1,699,663 - -0.1 1,699,684 + +0.4 1,699,804 + +0.0 1,699,812 - -0.2 1,699,907 - B158DRAFT_1638 0.13 -0.2 1,699,907 - B158DRAFT_1638 0.13 +0.1 1,699,975 - B158DRAFT_1638 0.15 -0.4 1,699,997 + B158DRAFT_1638 0.16 -0.3 1,699,997 + B158DRAFT_1638 0.16 -0.1 1,699,997 + B158DRAFT_1638 0.16 -0.0 1,700,007 + B158DRAFT_1638 0.16 -0.6 1,700,037 + B158DRAFT_1638 0.17 -0.2 1,700,112 + B158DRAFT_1638 0.20 -0.3 1,700,192 + B158DRAFT_1638 0.23 -0.3 1,700,279 - B158DRAFT_1638 0.25 -0.3 1,700,279 - B158DRAFT_1638 0.25 -0.1 1,700,432 + B158DRAFT_1638 0.31 -0.2 1,700,432 + B158DRAFT_1638 0.31 -0.0 1,700,440 - B158DRAFT_1638 0.31 +0.0 1,700,440 - B158DRAFT_1638 0.31 -0.1 1,700,474 - B158DRAFT_1638 0.32 +0.3 1,700,530 - B158DRAFT_1638 0.34 -0.2 1,700,551 - B158DRAFT_1638 0.35 +0.5 1,700,707 - B158DRAFT_1638 0.40 -0.1 1,700,707 - B158DRAFT_1638 0.40 -0.0 1,700,713 + B158DRAFT_1638 0.40 -0.7 1,700,726 + B158DRAFT_1638 0.40 -0.4 1,700,726 - B158DRAFT_1638 0.40 -0.0 1,700,942 - B158DRAFT_1638 0.48 -0.3 1,700,980 - B158DRAFT_1638 0.49 -0.1 1,700,989 + B158DRAFT_1638 0.49 -0.5 1,700,997 - B158DRAFT_1638 0.50 -0.3 1,700,997 - B158DRAFT_1638 0.50 -0.2 1,700,999 + B158DRAFT_1638 0.50 +0.1 1,700,999 + B158DRAFT_1638 0.50 -0.4 1,701,007 - B158DRAFT_1638 0.50 -0.3 1,701,007 - B158DRAFT_1638 0.50 -0.6 1,701,014 + B158DRAFT_1638 0.50 -0.3 1,701,021 - B158DRAFT_1638 0.50 +0.4 1,701,022 - B158DRAFT_1638 0.50 -1.1 1,701,055 - B158DRAFT_1638 0.52 +0.1 1,701,117 - B158DRAFT_1638 0.54 -0.9 1,701,179 - B158DRAFT_1638 0.56 +0.6 1,701,179 - B158DRAFT_1638 0.56 +0.2 1,701,181 + B158DRAFT_1638 0.56 +0.0 1,701,181 + B158DRAFT_1638 0.56 -0.4 1,701,189 - B158DRAFT_1638 0.56 -0.3 1,701,191 + B158DRAFT_1638 0.56 +0.2 1,701,214 - B158DRAFT_1638 0.57 +0.4 1,701,227 - B158DRAFT_1638 0.57 +0.6 1,701,295 + B158DRAFT_1638 0.60 -0.2 1,701,306 + B158DRAFT_1638 0.60 +0.4 1,701,383 + B158DRAFT_1638 0.63 -0.3 1,701,383 + B158DRAFT_1638 0.63 -0.1 1,701,511 - B158DRAFT_1638 0.67 +0.4 1,701,601 - B158DRAFT_1638 0.70 -0.1 1,701,649 - B158DRAFT_1638 0.72 -0.6 1,701,764 - B158DRAFT_1638 0.75 -0.4 1,701,785 - B158DRAFT_1638 0.76 -0.0 1,701,795 + B158DRAFT_1638 0.76 -0.2 1,701,795 + B158DRAFT_1638 0.76 -0.1 1,701,830 + B158DRAFT_1638 0.78 -1.2 1,701,838 - B158DRAFT_1638 0.78 -0.3 1,701,987 + B158DRAFT_1638 0.83 -0.1 1,702,032 - B158DRAFT_1638 0.84 -0.0 1,702,040 - B158DRAFT_1638 0.85 -0.3 1,702,256 - -0.3 1,702,256 - +0.2 1,702,256 - -0.5 1,702,401 + +0.2 1,702,556 + -0.2 1,702,556 + -0.4 1,702,562 - +1.5 1,702,564 - -0.3 1,702,600 + +0.2 1,702,608 - -0.1 1,702,608 - -0.3 1,702,610 + -0.2 1,702,737 + B158DRAFT_1639 0.11 -0.3 1,703,054 + B158DRAFT_1639 0.49 -0.2 1,703,054 + B158DRAFT_1639 0.49 -0.1 1,703,054 + B158DRAFT_1639 0.49 +0.3 1,703,062 - B158DRAFT_1639 0.50 -0.2 1,703,062 - B158DRAFT_1639 0.50 -0.3 1,703,081 + B158DRAFT_1639 0.53 -0.2 1,703,164 - B158DRAFT_1639 0.63 +0.3 1,703,265 + B158DRAFT_1639 0.75 -0.0 1,703,327 - B158DRAFT_1639 0.82 -0.4 1,703,345 - B158DRAFT_1639 0.84 -0.1 1,703,369 + B158DRAFT_1639 0.87 +0.1 1,703,382 - B158DRAFT_1639 0.89 +0.0 1,703,477 + -0.3 1,703,477 + -0.2 1,703,484 - -0.4 1,703,485 - +0.0
Or see this region's nucleotide sequence