Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1638

Experiment: m.b. Lomefloxacin 0.0032 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1637 and B158DRAFT_1638 are separated by 261 nucleotidesB158DRAFT_1638 and B158DRAFT_1639 are separated by 147 nucleotidesB158DRAFT_1639 and B158DRAFT_1640 are separated by 2 nucleotides B158DRAFT_1637: B158DRAFT_1637 - Site-specific recombinase XerD, at 1,698,319 to 1,699,260 _1637 B158DRAFT_1638: B158DRAFT_1638 - Transposase and inactivated derivatives, TnpA family, at 1,699,522 to 1,702,494 _1638 B158DRAFT_1639: B158DRAFT_1639 - McrBC 5-methylcytosine restriction system component., at 1,702,642 to 1,703,475 _1639 B158DRAFT_1640: B158DRAFT_1640 - GTPase subunit of restriction endonuclease, at 1,703,478 to 1,705,655 _1640 Position (kb) 1699 1700 1701 1702 1703Strain fitness (log2 ratio) -1 0 1at 1698.555 kb on - strand, within B158DRAFT_1637at 1698.585 kb on - strand, within B158DRAFT_1637at 1698.602 kb on - strand, within B158DRAFT_1637at 1698.607 kb on + strand, within B158DRAFT_1637at 1698.609 kb on - strand, within B158DRAFT_1637at 1698.621 kb on + strand, within B158DRAFT_1637at 1698.621 kb on + strand, within B158DRAFT_1637at 1698.626 kb on + strand, within B158DRAFT_1637at 1698.626 kb on + strand, within B158DRAFT_1637at 1698.626 kb on + strand, within B158DRAFT_1637at 1698.629 kb on - strand, within B158DRAFT_1637at 1698.629 kb on - strand, within B158DRAFT_1637at 1698.644 kb on - strand, within B158DRAFT_1637at 1698.644 kb on - strand, within B158DRAFT_1637at 1698.650 kb on + strand, within B158DRAFT_1637at 1698.650 kb on + strand, within B158DRAFT_1637at 1698.676 kb on - strand, within B158DRAFT_1637at 1698.743 kb on + strand, within B158DRAFT_1637at 1698.762 kb on + strand, within B158DRAFT_1637at 1698.798 kb on + strand, within B158DRAFT_1637at 1698.798 kb on + strand, within B158DRAFT_1637at 1698.798 kb on + strand, within B158DRAFT_1637at 1698.798 kb on + strand, within B158DRAFT_1637at 1698.806 kb on - strand, within B158DRAFT_1637at 1698.806 kb on - strand, within B158DRAFT_1637at 1698.806 kb on - strand, within B158DRAFT_1637at 1698.806 kb on - strand, within B158DRAFT_1637at 1698.858 kb on + strand, within B158DRAFT_1637at 1698.866 kb on - strand, within B158DRAFT_1637at 1698.876 kb on + strand, within B158DRAFT_1637at 1698.883 kb on + strand, within B158DRAFT_1637at 1698.944 kb on + strand, within B158DRAFT_1637at 1698.944 kb on + strand, within B158DRAFT_1637at 1698.944 kb on + strand, within B158DRAFT_1637at 1699.015 kb on + strand, within B158DRAFT_1637at 1699.019 kb on + strand, within B158DRAFT_1637at 1699.072 kb on + strand, within B158DRAFT_1637at 1699.159 kb on + strand, within B158DRAFT_1637at 1699.206 kb on - strandat 1699.206 kb on - strandat 1699.206 kb on - strandat 1699.206 kb on - strandat 1699.208 kb on + strandat 1699.288 kb on + strandat 1699.343 kb on + strandat 1699.343 kb on + strandat 1699.372 kb on - strandat 1699.400 kb on - strandat 1699.415 kb on + strandat 1699.416 kb on + strandat 1699.416 kb on + strandat 1699.423 kb on - strandat 1699.424 kb on - strandat 1699.439 kb on + strandat 1699.442 kb on + strandat 1699.442 kb on + strandat 1699.541 kb on + strandat 1699.560 kb on + strandat 1699.587 kb on - strandat 1699.587 kb on - strandat 1699.587 kb on - strandat 1699.611 kb on + strandat 1699.614 kb on - strandat 1699.630 kb on - strandat 1699.630 kb on - strandat 1699.646 kb on + strandat 1699.649 kb on - strandat 1699.654 kb on - strandat 1699.663 kb on - strandat 1699.663 kb on - strandat 1699.684 kb on + strandat 1699.804 kb on + strandat 1699.812 kb on - strandat 1699.907 kb on - strand, within B158DRAFT_1638at 1699.907 kb on - strand, within B158DRAFT_1638at 1699.975 kb on - strand, within B158DRAFT_1638at 1699.997 kb on + strand, within B158DRAFT_1638at 1699.997 kb on + strand, within B158DRAFT_1638at 1699.997 kb on + strand, within B158DRAFT_1638at 1700.007 kb on + strand, within B158DRAFT_1638at 1700.037 kb on + strand, within B158DRAFT_1638at 1700.112 kb on + strand, within B158DRAFT_1638at 1700.192 kb on + strand, within B158DRAFT_1638at 1700.279 kb on - strand, within B158DRAFT_1638at 1700.279 kb on - strand, within B158DRAFT_1638at 1700.432 kb on + strand, within B158DRAFT_1638at 1700.432 kb on + strand, within B158DRAFT_1638at 1700.440 kb on - strand, within B158DRAFT_1638at 1700.440 kb on - strand, within B158DRAFT_1638at 1700.474 kb on - strand, within B158DRAFT_1638at 1700.530 kb on - strand, within B158DRAFT_1638at 1700.551 kb on - strand, within B158DRAFT_1638at 1700.707 kb on - strand, within B158DRAFT_1638at 1700.707 kb on - strand, within B158DRAFT_1638at 1700.713 kb on + strand, within B158DRAFT_1638at 1700.726 kb on + strand, within B158DRAFT_1638at 1700.726 kb on - strand, within B158DRAFT_1638at 1700.942 kb on - strand, within B158DRAFT_1638at 1700.980 kb on - strand, within B158DRAFT_1638at 1700.989 kb on + strand, within B158DRAFT_1638at 1700.997 kb on - strand, within B158DRAFT_1638at 1700.997 kb on - strand, within B158DRAFT_1638at 1700.999 kb on + strand, within B158DRAFT_1638at 1700.999 kb on + strand, within B158DRAFT_1638at 1701.007 kb on - strand, within B158DRAFT_1638at 1701.007 kb on - strand, within B158DRAFT_1638at 1701.014 kb on + strand, within B158DRAFT_1638at 1701.021 kb on - strand, within B158DRAFT_1638at 1701.022 kb on - strand, within B158DRAFT_1638at 1701.055 kb on - strand, within B158DRAFT_1638at 1701.117 kb on - strand, within B158DRAFT_1638at 1701.179 kb on - strand, within B158DRAFT_1638at 1701.179 kb on - strand, within B158DRAFT_1638at 1701.181 kb on + strand, within B158DRAFT_1638at 1701.181 kb on + strand, within B158DRAFT_1638at 1701.189 kb on - strand, within B158DRAFT_1638at 1701.191 kb on + strand, within B158DRAFT_1638at 1701.214 kb on - strand, within B158DRAFT_1638at 1701.227 kb on - strand, within B158DRAFT_1638at 1701.295 kb on + strand, within B158DRAFT_1638at 1701.306 kb on + strand, within B158DRAFT_1638at 1701.383 kb on + strand, within B158DRAFT_1638at 1701.383 kb on + strand, within B158DRAFT_1638at 1701.511 kb on - strand, within B158DRAFT_1638at 1701.601 kb on - strand, within B158DRAFT_1638at 1701.649 kb on - strand, within B158DRAFT_1638at 1701.764 kb on - strand, within B158DRAFT_1638at 1701.785 kb on - strand, within B158DRAFT_1638at 1701.795 kb on + strand, within B158DRAFT_1638at 1701.795 kb on + strand, within B158DRAFT_1638at 1701.830 kb on + strand, within B158DRAFT_1638at 1701.838 kb on - strand, within B158DRAFT_1638at 1701.987 kb on + strand, within B158DRAFT_1638at 1702.032 kb on - strand, within B158DRAFT_1638at 1702.040 kb on - strand, within B158DRAFT_1638at 1702.256 kb on - strandat 1702.256 kb on - strandat 1702.256 kb on - strandat 1702.401 kb on + strandat 1702.556 kb on + strandat 1702.556 kb on + strandat 1702.562 kb on - strandat 1702.564 kb on - strandat 1702.600 kb on + strandat 1702.608 kb on - strandat 1702.608 kb on - strandat 1702.610 kb on + strandat 1702.737 kb on + strand, within B158DRAFT_1639at 1703.054 kb on + strand, within B158DRAFT_1639at 1703.054 kb on + strand, within B158DRAFT_1639at 1703.054 kb on + strand, within B158DRAFT_1639at 1703.062 kb on - strand, within B158DRAFT_1639at 1703.062 kb on - strand, within B158DRAFT_1639at 1703.081 kb on + strand, within B158DRAFT_1639at 1703.164 kb on - strand, within B158DRAFT_1639at 1703.265 kb on + strand, within B158DRAFT_1639at 1703.327 kb on - strand, within B158DRAFT_1639at 1703.345 kb on - strand, within B158DRAFT_1639at 1703.369 kb on + strand, within B158DRAFT_1639at 1703.382 kb on - strand, within B158DRAFT_1639at 1703.477 kb on + strandat 1703.477 kb on + strandat 1703.484 kb on - strandat 1703.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0032 mM
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1,698,555 - B158DRAFT_1637 0.25 -0.3
1,698,585 - B158DRAFT_1637 0.28 +0.3
1,698,602 - B158DRAFT_1637 0.30 -0.1
1,698,607 + B158DRAFT_1637 0.31 -0.7
1,698,609 - B158DRAFT_1637 0.31 -0.1
1,698,621 + B158DRAFT_1637 0.32 -0.2
1,698,621 + B158DRAFT_1637 0.32 +0.7
1,698,626 + B158DRAFT_1637 0.33 -0.5
1,698,626 + B158DRAFT_1637 0.33 -0.8
1,698,626 + B158DRAFT_1637 0.33 -0.8
1,698,629 - B158DRAFT_1637 0.33 +0.2
1,698,629 - B158DRAFT_1637 0.33 +0.0
1,698,644 - B158DRAFT_1637 0.35 +1.0
1,698,644 - B158DRAFT_1637 0.35 -0.1
1,698,650 + B158DRAFT_1637 0.35 -0.3
1,698,650 + B158DRAFT_1637 0.35 -0.2
1,698,676 - B158DRAFT_1637 0.38 +0.4
1,698,743 + B158DRAFT_1637 0.45 -0.1
1,698,762 + B158DRAFT_1637 0.47 +0.3
1,698,798 + B158DRAFT_1637 0.51 -0.4
1,698,798 + B158DRAFT_1637 0.51 +0.9
1,698,798 + B158DRAFT_1637 0.51 -0.2
1,698,798 + B158DRAFT_1637 0.51 +0.0
1,698,806 - B158DRAFT_1637 0.52 -0.6
1,698,806 - B158DRAFT_1637 0.52 -0.0
1,698,806 - B158DRAFT_1637 0.52 -0.2
1,698,806 - B158DRAFT_1637 0.52 -0.4
1,698,858 + B158DRAFT_1637 0.57 +0.0
1,698,866 - B158DRAFT_1637 0.58 +0.2
1,698,876 + B158DRAFT_1637 0.59 -0.9
1,698,883 + B158DRAFT_1637 0.60 -0.4
1,698,944 + B158DRAFT_1637 0.66 +0.1
1,698,944 + B158DRAFT_1637 0.66 -0.3
1,698,944 + B158DRAFT_1637 0.66 +0.4
1,699,015 + B158DRAFT_1637 0.74 -0.0
1,699,019 + B158DRAFT_1637 0.74 -0.1
1,699,072 + B158DRAFT_1637 0.80 -0.1
1,699,159 + B158DRAFT_1637 0.89 -0.5
1,699,206 - -0.3
1,699,206 - -0.2
1,699,206 - +0.0
1,699,206 - -0.1
1,699,208 + -0.4
1,699,288 + -0.2
1,699,343 + -0.1
1,699,343 + -0.0
1,699,372 - -0.2
1,699,400 - -0.1
1,699,415 + +0.3
1,699,416 + -0.5
1,699,416 + -0.1
1,699,423 - +0.1
1,699,424 - -0.2
1,699,439 + +0.0
1,699,442 + -0.1
1,699,442 + -0.2
1,699,541 + -0.3
1,699,560 + -0.1
1,699,587 - +0.3
1,699,587 - -0.5
1,699,587 - -0.9
1,699,611 + +0.6
1,699,614 - -0.2
1,699,630 - +0.2
1,699,630 - +0.0
1,699,646 + +0.0
1,699,649 - -0.4
1,699,654 - +0.1
1,699,663 - +0.4
1,699,663 - -0.1
1,699,684 + +0.4
1,699,804 + +0.0
1,699,812 - -0.2
1,699,907 - B158DRAFT_1638 0.13 -0.2
1,699,907 - B158DRAFT_1638 0.13 +0.1
1,699,975 - B158DRAFT_1638 0.15 -0.4
1,699,997 + B158DRAFT_1638 0.16 -0.3
1,699,997 + B158DRAFT_1638 0.16 -0.1
1,699,997 + B158DRAFT_1638 0.16 -0.0
1,700,007 + B158DRAFT_1638 0.16 -0.6
1,700,037 + B158DRAFT_1638 0.17 -0.2
1,700,112 + B158DRAFT_1638 0.20 -0.3
1,700,192 + B158DRAFT_1638 0.23 -0.3
1,700,279 - B158DRAFT_1638 0.25 -0.3
1,700,279 - B158DRAFT_1638 0.25 -0.1
1,700,432 + B158DRAFT_1638 0.31 -0.2
1,700,432 + B158DRAFT_1638 0.31 -0.0
1,700,440 - B158DRAFT_1638 0.31 +0.0
1,700,440 - B158DRAFT_1638 0.31 -0.1
1,700,474 - B158DRAFT_1638 0.32 +0.3
1,700,530 - B158DRAFT_1638 0.34 -0.2
1,700,551 - B158DRAFT_1638 0.35 +0.5
1,700,707 - B158DRAFT_1638 0.40 -0.1
1,700,707 - B158DRAFT_1638 0.40 -0.0
1,700,713 + B158DRAFT_1638 0.40 -0.7
1,700,726 + B158DRAFT_1638 0.40 -0.4
1,700,726 - B158DRAFT_1638 0.40 -0.0
1,700,942 - B158DRAFT_1638 0.48 -0.3
1,700,980 - B158DRAFT_1638 0.49 -0.1
1,700,989 + B158DRAFT_1638 0.49 -0.5
1,700,997 - B158DRAFT_1638 0.50 -0.3
1,700,997 - B158DRAFT_1638 0.50 -0.2
1,700,999 + B158DRAFT_1638 0.50 +0.1
1,700,999 + B158DRAFT_1638 0.50 -0.4
1,701,007 - B158DRAFT_1638 0.50 -0.3
1,701,007 - B158DRAFT_1638 0.50 -0.6
1,701,014 + B158DRAFT_1638 0.50 -0.3
1,701,021 - B158DRAFT_1638 0.50 +0.4
1,701,022 - B158DRAFT_1638 0.50 -1.1
1,701,055 - B158DRAFT_1638 0.52 +0.1
1,701,117 - B158DRAFT_1638 0.54 -0.9
1,701,179 - B158DRAFT_1638 0.56 +0.6
1,701,179 - B158DRAFT_1638 0.56 +0.2
1,701,181 + B158DRAFT_1638 0.56 +0.0
1,701,181 + B158DRAFT_1638 0.56 -0.4
1,701,189 - B158DRAFT_1638 0.56 -0.3
1,701,191 + B158DRAFT_1638 0.56 +0.2
1,701,214 - B158DRAFT_1638 0.57 +0.4
1,701,227 - B158DRAFT_1638 0.57 +0.6
1,701,295 + B158DRAFT_1638 0.60 -0.2
1,701,306 + B158DRAFT_1638 0.60 +0.4
1,701,383 + B158DRAFT_1638 0.63 -0.3
1,701,383 + B158DRAFT_1638 0.63 -0.1
1,701,511 - B158DRAFT_1638 0.67 +0.4
1,701,601 - B158DRAFT_1638 0.70 -0.1
1,701,649 - B158DRAFT_1638 0.72 -0.6
1,701,764 - B158DRAFT_1638 0.75 -0.4
1,701,785 - B158DRAFT_1638 0.76 -0.0
1,701,795 + B158DRAFT_1638 0.76 -0.2
1,701,795 + B158DRAFT_1638 0.76 -0.1
1,701,830 + B158DRAFT_1638 0.78 -1.2
1,701,838 - B158DRAFT_1638 0.78 -0.3
1,701,987 + B158DRAFT_1638 0.83 -0.1
1,702,032 - B158DRAFT_1638 0.84 -0.0
1,702,040 - B158DRAFT_1638 0.85 -0.3
1,702,256 - -0.3
1,702,256 - +0.2
1,702,256 - -0.5
1,702,401 + +0.2
1,702,556 + -0.2
1,702,556 + -0.4
1,702,562 - +1.5
1,702,564 - -0.3
1,702,600 + +0.2
1,702,608 - -0.1
1,702,608 - -0.3
1,702,610 + -0.2
1,702,737 + B158DRAFT_1639 0.11 -0.3
1,703,054 + B158DRAFT_1639 0.49 -0.2
1,703,054 + B158DRAFT_1639 0.49 -0.1
1,703,054 + B158DRAFT_1639 0.49 +0.3
1,703,062 - B158DRAFT_1639 0.50 -0.2
1,703,062 - B158DRAFT_1639 0.50 -0.3
1,703,081 + B158DRAFT_1639 0.53 -0.2
1,703,164 - B158DRAFT_1639 0.63 +0.3
1,703,265 + B158DRAFT_1639 0.75 -0.0
1,703,327 - B158DRAFT_1639 0.82 -0.4
1,703,345 - B158DRAFT_1639 0.84 -0.1
1,703,369 + B158DRAFT_1639 0.87 +0.1
1,703,382 - B158DRAFT_1639 0.89 +0.0
1,703,477 + -0.3
1,703,477 + -0.2
1,703,484 - -0.4
1,703,485 - +0.0

Or see this region's nucleotide sequence