Experiment: m.b. Lomefloxacin 0.0032 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1060 and B158DRAFT_1061 are separated by 15 nucleotides B158DRAFT_1061 and B158DRAFT_1062 are separated by 87 nucleotides B158DRAFT_1062 and B158DRAFT_1063 are separated by 12 nucleotides
B158DRAFT_1060: B158DRAFT_1060 - FOG: LysM repeat, at 1,100,886 to 1,102,430
_1060
B158DRAFT_1061: B158DRAFT_1061 - hydroxyacylglutathione hydrolase, at 1,102,446 to 1,103,246
_1061
B158DRAFT_1062: B158DRAFT_1062 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,103,334 to 1,104,053
_1062
B158DRAFT_1063: B158DRAFT_1063 - Ribonuclease HI, at 1,104,066 to 1,104,515
_1063
Position (kb)
1102
1103
1104 Strain fitness (log2 ratio)
-2
-1
0
1 at 1101.472 kb on - strand, within B158DRAFT_1060 at 1101.472 kb on - strand, within B158DRAFT_1060 at 1101.473 kb on - strand, within B158DRAFT_1060 at 1101.483 kb on + strand, within B158DRAFT_1060 at 1101.491 kb on - strand, within B158DRAFT_1060 at 1101.517 kb on - strand, within B158DRAFT_1060 at 1101.528 kb on + strand, within B158DRAFT_1060 at 1101.538 kb on + strand, within B158DRAFT_1060 at 1101.577 kb on + strand, within B158DRAFT_1060 at 1101.577 kb on + strand, within B158DRAFT_1060 at 1101.585 kb on - strand, within B158DRAFT_1060 at 1101.585 kb on - strand, within B158DRAFT_1060 at 1101.651 kb on + strand, within B158DRAFT_1060 at 1101.659 kb on - strand, within B158DRAFT_1060 at 1101.698 kb on + strand, within B158DRAFT_1060 at 1101.706 kb on - strand, within B158DRAFT_1060 at 1101.706 kb on - strand, within B158DRAFT_1060 at 1101.708 kb on - strand, within B158DRAFT_1060 at 1101.801 kb on - strand, within B158DRAFT_1060 at 1101.956 kb on - strand, within B158DRAFT_1060 at 1101.972 kb on - strand, within B158DRAFT_1060 at 1101.984 kb on + strand, within B158DRAFT_1060 at 1101.984 kb on + strand, within B158DRAFT_1060 at 1102.139 kb on + strand, within B158DRAFT_1060 at 1102.147 kb on - strand, within B158DRAFT_1060 at 1102.147 kb on - strand, within B158DRAFT_1060 at 1102.155 kb on + strand, within B158DRAFT_1060 at 1102.185 kb on + strand, within B158DRAFT_1060 at 1102.215 kb on + strand, within B158DRAFT_1060 at 1102.215 kb on + strand, within B158DRAFT_1060 at 1102.223 kb on - strand, within B158DRAFT_1060 at 1102.223 kb on - strand, within B158DRAFT_1060 at 1102.262 kb on - strand, within B158DRAFT_1060 at 1102.290 kb on - strand at 1102.292 kb on + strand at 1102.292 kb on + strand at 1102.292 kb on + strand at 1102.312 kb on + strand at 1102.387 kb on - strand at 1102.492 kb on + strand at 1102.492 kb on + strand at 1102.500 kb on - strand at 1102.500 kb on - strand at 1102.500 kb on - strand at 1102.528 kb on + strand, within B158DRAFT_1061 at 1102.528 kb on + strand, within B158DRAFT_1061 at 1102.544 kb on + strand, within B158DRAFT_1061 at 1102.544 kb on + strand, within B158DRAFT_1061 at 1102.552 kb on - strand, within B158DRAFT_1061 at 1102.613 kb on + strand, within B158DRAFT_1061 at 1102.620 kb on + strand, within B158DRAFT_1061 at 1102.650 kb on + strand, within B158DRAFT_1061 at 1102.655 kb on + strand, within B158DRAFT_1061 at 1102.655 kb on + strand, within B158DRAFT_1061 at 1102.655 kb on + strand, within B158DRAFT_1061 at 1102.655 kb on + strand, within B158DRAFT_1061 at 1102.655 kb on + strand, within B158DRAFT_1061 at 1102.655 kb on + strand, within B158DRAFT_1061 at 1102.655 kb on + strand, within B158DRAFT_1061 at 1102.663 kb on - strand, within B158DRAFT_1061 at 1102.663 kb on - strand, within B158DRAFT_1061 at 1102.663 kb on - strand, within B158DRAFT_1061 at 1102.663 kb on - strand, within B158DRAFT_1061 at 1102.698 kb on + strand, within B158DRAFT_1061 at 1102.763 kb on - strand, within B158DRAFT_1061 at 1102.797 kb on - strand, within B158DRAFT_1061 at 1102.815 kb on - strand, within B158DRAFT_1061 at 1102.821 kb on - strand, within B158DRAFT_1061 at 1102.860 kb on + strand, within B158DRAFT_1061 at 1102.885 kb on + strand, within B158DRAFT_1061 at 1102.886 kb on - strand, within B158DRAFT_1061 at 1102.966 kb on - strand, within B158DRAFT_1061 at 1102.972 kb on - strand, within B158DRAFT_1061 at 1103.009 kb on - strand, within B158DRAFT_1061 at 1103.034 kb on + strand, within B158DRAFT_1061 at 1103.034 kb on + strand, within B158DRAFT_1061 at 1103.034 kb on + strand, within B158DRAFT_1061 at 1103.034 kb on + strand, within B158DRAFT_1061 at 1103.042 kb on - strand, within B158DRAFT_1061 at 1103.097 kb on - strand, within B158DRAFT_1061 at 1103.115 kb on + strand, within B158DRAFT_1061 at 1103.123 kb on - strand, within B158DRAFT_1061 at 1103.123 kb on - strand, within B158DRAFT_1061 at 1103.130 kb on + strand, within B158DRAFT_1061 at 1103.130 kb on + strand, within B158DRAFT_1061 at 1103.130 kb on + strand, within B158DRAFT_1061 at 1103.138 kb on - strand, within B158DRAFT_1061 at 1103.138 kb on - strand, within B158DRAFT_1061 at 1103.138 kb on - strand, within B158DRAFT_1061 at 1103.216 kb on + strand at 1103.224 kb on - strand at 1103.253 kb on + strand at 1103.261 kb on - strand at 1103.264 kb on + strand at 1103.264 kb on + strand at 1103.264 kb on + strand at 1103.272 kb on + strand at 1103.272 kb on - strand at 1103.272 kb on - strand at 1103.272 kb on - strand at 1103.285 kb on - strand at 1103.306 kb on + strand at 1103.306 kb on + strand at 1103.314 kb on - strand at 1103.314 kb on - strand at 1103.338 kb on + strand at 1103.338 kb on + strand at 1103.346 kb on - strand at 1103.346 kb on - strand at 1103.346 kb on - strand at 1103.346 kb on - strand at 1103.454 kb on + strand, within B158DRAFT_1062 at 1103.459 kb on + strand, within B158DRAFT_1062 at 1103.462 kb on - strand, within B158DRAFT_1062 at 1103.462 kb on - strand, within B158DRAFT_1062 at 1103.462 kb on - strand, within B158DRAFT_1062 at 1103.476 kb on + strand, within B158DRAFT_1062 at 1103.476 kb on + strand, within B158DRAFT_1062 at 1103.484 kb on - strand, within B158DRAFT_1062 at 1103.484 kb on - strand, within B158DRAFT_1062 at 1103.517 kb on - strand, within B158DRAFT_1062 at 1103.519 kb on + strand, within B158DRAFT_1062 at 1103.539 kb on + strand, within B158DRAFT_1062 at 1103.565 kb on + strand, within B158DRAFT_1062 at 1103.573 kb on + strand, within B158DRAFT_1062 at 1103.610 kb on + strand, within B158DRAFT_1062 at 1103.674 kb on + strand, within B158DRAFT_1062 at 1103.690 kb on + strand, within B158DRAFT_1062 at 1103.690 kb on + strand, within B158DRAFT_1062 at 1103.690 kb on + strand, within B158DRAFT_1062 at 1103.698 kb on - strand, within B158DRAFT_1062 at 1103.698 kb on - strand, within B158DRAFT_1062 at 1103.702 kb on + strand, within B158DRAFT_1062 at 1103.702 kb on + strand, within B158DRAFT_1062 at 1103.710 kb on - strand, within B158DRAFT_1062 at 1103.716 kb on - strand, within B158DRAFT_1062 at 1103.770 kb on + strand, within B158DRAFT_1062 at 1103.770 kb on + strand, within B158DRAFT_1062 at 1103.770 kb on + strand, within B158DRAFT_1062 at 1103.770 kb on + strand, within B158DRAFT_1062 at 1103.778 kb on - strand, within B158DRAFT_1062 at 1103.859 kb on + strand, within B158DRAFT_1062 at 1103.883 kb on + strand, within B158DRAFT_1062 at 1103.883 kb on + strand, within B158DRAFT_1062 at 1103.891 kb on - strand, within B158DRAFT_1062 at 1103.905 kb on + strand, within B158DRAFT_1062 at 1103.906 kb on - strand, within B158DRAFT_1062 at 1103.935 kb on - strand, within B158DRAFT_1062 at 1103.953 kb on - strand, within B158DRAFT_1062 at 1103.999 kb on + strand at 1104.143 kb on - strand, within B158DRAFT_1063 at 1104.143 kb on - strand, within B158DRAFT_1063
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0032 mM remove 1,101,472 - B158DRAFT_1060 0.38 -0.2 1,101,472 - B158DRAFT_1060 0.38 -0.3 1,101,473 - B158DRAFT_1060 0.38 -0.3 1,101,483 + B158DRAFT_1060 0.39 -0.1 1,101,491 - B158DRAFT_1060 0.39 +0.6 1,101,517 - B158DRAFT_1060 0.41 -0.3 1,101,528 + B158DRAFT_1060 0.42 -0.2 1,101,538 + B158DRAFT_1060 0.42 -0.1 1,101,577 + B158DRAFT_1060 0.45 +0.2 1,101,577 + B158DRAFT_1060 0.45 -0.0 1,101,585 - B158DRAFT_1060 0.45 -0.1 1,101,585 - B158DRAFT_1060 0.45 +0.5 1,101,651 + B158DRAFT_1060 0.50 -0.1 1,101,659 - B158DRAFT_1060 0.50 +0.5 1,101,698 + B158DRAFT_1060 0.53 -0.1 1,101,706 - B158DRAFT_1060 0.53 -0.1 1,101,706 - B158DRAFT_1060 0.53 +0.1 1,101,708 - B158DRAFT_1060 0.53 +0.2 1,101,801 - B158DRAFT_1060 0.59 +0.1 1,101,956 - B158DRAFT_1060 0.69 +0.0 1,101,972 - B158DRAFT_1060 0.70 -0.3 1,101,984 + B158DRAFT_1060 0.71 -0.1 1,101,984 + B158DRAFT_1060 0.71 +0.4 1,102,139 + B158DRAFT_1060 0.81 +0.3 1,102,147 - B158DRAFT_1060 0.82 +0.2 1,102,147 - B158DRAFT_1060 0.82 -0.4 1,102,155 + B158DRAFT_1060 0.82 +0.4 1,102,185 + B158DRAFT_1060 0.84 -0.2 1,102,215 + B158DRAFT_1060 0.86 -0.0 1,102,215 + B158DRAFT_1060 0.86 -0.6 1,102,223 - B158DRAFT_1060 0.87 +0.1 1,102,223 - B158DRAFT_1060 0.87 -0.1 1,102,262 - B158DRAFT_1060 0.89 -0.0 1,102,290 - +0.1 1,102,292 + -0.1 1,102,292 + -0.2 1,102,292 + -0.0 1,102,312 + +0.5 1,102,387 - +0.3 1,102,492 + -0.1 1,102,492 + -0.1 1,102,500 - -0.9 1,102,500 - +0.3 1,102,500 - -0.1 1,102,528 + B158DRAFT_1061 0.10 -0.2 1,102,528 + B158DRAFT_1061 0.10 +0.5 1,102,544 + B158DRAFT_1061 0.12 -0.1 1,102,544 + B158DRAFT_1061 0.12 -0.0 1,102,552 - B158DRAFT_1061 0.13 -0.5 1,102,613 + B158DRAFT_1061 0.21 -0.0 1,102,620 + B158DRAFT_1061 0.22 -0.5 1,102,650 + B158DRAFT_1061 0.25 -0.1 1,102,655 + B158DRAFT_1061 0.26 +0.0 1,102,655 + B158DRAFT_1061 0.26 +0.2 1,102,655 + B158DRAFT_1061 0.26 +0.0 1,102,655 + B158DRAFT_1061 0.26 -0.2 1,102,655 + B158DRAFT_1061 0.26 +0.4 1,102,655 + B158DRAFT_1061 0.26 -0.5 1,102,655 + B158DRAFT_1061 0.26 +0.1 1,102,663 - B158DRAFT_1061 0.27 -0.3 1,102,663 - B158DRAFT_1061 0.27 -0.2 1,102,663 - B158DRAFT_1061 0.27 -0.2 1,102,663 - B158DRAFT_1061 0.27 -0.3 1,102,698 + B158DRAFT_1061 0.31 -0.3 1,102,763 - B158DRAFT_1061 0.40 -0.6 1,102,797 - B158DRAFT_1061 0.44 +0.3 1,102,815 - B158DRAFT_1061 0.46 -0.7 1,102,821 - B158DRAFT_1061 0.47 -0.9 1,102,860 + B158DRAFT_1061 0.52 -0.3 1,102,885 + B158DRAFT_1061 0.55 -0.3 1,102,886 - B158DRAFT_1061 0.55 -0.4 1,102,966 - B158DRAFT_1061 0.65 +0.3 1,102,972 - B158DRAFT_1061 0.66 -0.2 1,103,009 - B158DRAFT_1061 0.70 +0.0 1,103,034 + B158DRAFT_1061 0.73 -0.3 1,103,034 + B158DRAFT_1061 0.73 -0.2 1,103,034 + B158DRAFT_1061 0.73 +0.7 1,103,034 + B158DRAFT_1061 0.73 -0.2 1,103,042 - B158DRAFT_1061 0.74 +0.2 1,103,097 - B158DRAFT_1061 0.81 -0.4 1,103,115 + B158DRAFT_1061 0.84 -0.3 1,103,123 - B158DRAFT_1061 0.85 -0.1 1,103,123 - B158DRAFT_1061 0.85 -0.5 1,103,130 + B158DRAFT_1061 0.85 +0.3 1,103,130 + B158DRAFT_1061 0.85 -0.1 1,103,130 + B158DRAFT_1061 0.85 +0.7 1,103,138 - B158DRAFT_1061 0.86 -0.0 1,103,138 - B158DRAFT_1061 0.86 +0.0 1,103,138 - B158DRAFT_1061 0.86 -0.1 1,103,216 + -0.2 1,103,224 - -0.4 1,103,253 + +0.0 1,103,261 - -0.5 1,103,264 + -0.3 1,103,264 + +0.2 1,103,264 + -0.3 1,103,272 + -0.7 1,103,272 - -1.1 1,103,272 - -0.9 1,103,272 - -0.9 1,103,285 - -0.4 1,103,306 + -0.2 1,103,306 + -0.2 1,103,314 - -0.2 1,103,314 - -0.2 1,103,338 + -0.0 1,103,338 + -0.2 1,103,346 - -0.2 1,103,346 - -1.4 1,103,346 - -0.5 1,103,346 - -0.7 1,103,454 + B158DRAFT_1062 0.17 -0.1 1,103,459 + B158DRAFT_1062 0.17 -0.5 1,103,462 - B158DRAFT_1062 0.18 -0.9 1,103,462 - B158DRAFT_1062 0.18 -0.6 1,103,462 - B158DRAFT_1062 0.18 -1.0 1,103,476 + B158DRAFT_1062 0.20 -0.5 1,103,476 + B158DRAFT_1062 0.20 -0.2 1,103,484 - B158DRAFT_1062 0.21 -0.9 1,103,484 - B158DRAFT_1062 0.21 -1.0 1,103,517 - B158DRAFT_1062 0.25 -0.5 1,103,519 + B158DRAFT_1062 0.26 +0.0 1,103,539 + B158DRAFT_1062 0.28 -0.4 1,103,565 + B158DRAFT_1062 0.32 -0.0 1,103,573 + B158DRAFT_1062 0.33 -0.3 1,103,610 + B158DRAFT_1062 0.38 -0.2 1,103,674 + B158DRAFT_1062 0.47 +0.1 1,103,690 + B158DRAFT_1062 0.49 -0.4 1,103,690 + B158DRAFT_1062 0.49 -0.1 1,103,690 + B158DRAFT_1062 0.49 +0.4 1,103,698 - B158DRAFT_1062 0.51 -0.4 1,103,698 - B158DRAFT_1062 0.51 -0.5 1,103,702 + B158DRAFT_1062 0.51 -0.2 1,103,702 + B158DRAFT_1062 0.51 -0.3 1,103,710 - B158DRAFT_1062 0.52 -0.7 1,103,716 - B158DRAFT_1062 0.53 +1.3 1,103,770 + B158DRAFT_1062 0.61 -0.9 1,103,770 + B158DRAFT_1062 0.61 -1.1 1,103,770 + B158DRAFT_1062 0.61 -1.3 1,103,770 + B158DRAFT_1062 0.61 -0.9 1,103,778 - B158DRAFT_1062 0.62 -2.2 1,103,859 + B158DRAFT_1062 0.73 -0.5 1,103,883 + B158DRAFT_1062 0.76 +0.6 1,103,883 + B158DRAFT_1062 0.76 -0.4 1,103,891 - B158DRAFT_1062 0.77 -2.5 1,103,905 + B158DRAFT_1062 0.79 +0.0 1,103,906 - B158DRAFT_1062 0.79 -2.2 1,103,935 - B158DRAFT_1062 0.83 -1.4 1,103,953 - B158DRAFT_1062 0.86 -2.5 1,103,999 + -0.6 1,104,143 - B158DRAFT_1063 0.17 -1.2 1,104,143 - B158DRAFT_1063 0.17 -0.9
Or see this region's nucleotide sequence