Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0875

Experiment: m.b. Lomefloxacin 0.0032 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0873 and B158DRAFT_0874 are separated by 76 nucleotidesB158DRAFT_0874 and B158DRAFT_0875 overlap by 4 nucleotidesB158DRAFT_0875 and B158DRAFT_0876 are separated by 107 nucleotides B158DRAFT_0873: B158DRAFT_0873 - DNA adenine methylase Dam, at 888,996 to 889,829 _0873 B158DRAFT_0874: B158DRAFT_0874 - Protein of unknown function (DUF2970)., at 889,906 to 890,190 _0874 B158DRAFT_0875: B158DRAFT_0875 - hypothetical protein, at 890,187 to 890,501 _0875 B158DRAFT_0876: B158DRAFT_0876 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 890,609 to 891,988 _0876 Position (kb) 890 891Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 889.265 kb on + strand, within B158DRAFT_0873at 889.282 kb on - strand, within B158DRAFT_0873at 889.313 kb on + strand, within B158DRAFT_0873at 889.321 kb on - strand, within B158DRAFT_0873at 889.321 kb on - strand, within B158DRAFT_0873at 889.321 kb on - strand, within B158DRAFT_0873at 889.401 kb on + strand, within B158DRAFT_0873at 889.475 kb on + strand, within B158DRAFT_0873at 889.483 kb on - strand, within B158DRAFT_0873at 889.483 kb on - strand, within B158DRAFT_0873at 889.483 kb on - strand, within B158DRAFT_0873at 889.530 kb on + strand, within B158DRAFT_0873at 889.530 kb on + strand, within B158DRAFT_0873at 889.538 kb on - strand, within B158DRAFT_0873at 889.538 kb on - strand, within B158DRAFT_0873at 889.538 kb on - strand, within B158DRAFT_0873at 889.559 kb on + strand, within B158DRAFT_0873at 889.559 kb on + strand, within B158DRAFT_0873at 889.780 kb on + strandat 889.793 kb on - strandat 889.793 kb on - strandat 889.798 kb on - strandat 889.831 kb on - strandat 889.835 kb on + strandat 889.845 kb on - strandat 889.884 kb on + strandat 889.884 kb on + strandat 889.892 kb on - strandat 889.892 kb on - strandat 889.892 kb on - strandat 889.911 kb on + strandat 889.919 kb on - strandat 889.926 kb on + strandat 890.310 kb on + strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.398 kb on - strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.414 kb on - strand, within B158DRAFT_0875at 890.414 kb on - strand, within B158DRAFT_0875at 890.424 kb on + strand, within B158DRAFT_0875at 890.424 kb on + strand, within B158DRAFT_0875at 890.424 kb on + strand, within B158DRAFT_0875at 890.432 kb on - strand, within B158DRAFT_0875at 890.446 kb on - strand, within B158DRAFT_0875at 890.446 kb on - strand, within B158DRAFT_0875at 890.547 kb on + strandat 890.552 kb on + strandat 890.555 kb on - strandat 890.706 kb on - strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.730 kb on + strandat 890.730 kb on + strandat 890.730 kb on + strandat 890.731 kb on - strandat 890.731 kb on - strandat 890.731 kb on - strandat 890.738 kb on - strandat 890.755 kb on + strand, within B158DRAFT_0876at 890.828 kb on + strand, within B158DRAFT_0876at 890.829 kb on - strand, within B158DRAFT_0876at 890.836 kb on - strand, within B158DRAFT_0876at 890.876 kb on - strand, within B158DRAFT_0876at 890.902 kb on + strand, within B158DRAFT_0876at 890.902 kb on + strand, within B158DRAFT_0876at 890.902 kb on + strand, within B158DRAFT_0876at 890.902 kb on + strand, within B158DRAFT_0876at 890.902 kb on + strand, within B158DRAFT_0876at 890.902 kb on + strand, within B158DRAFT_0876at 890.902 kb on + strand, within B158DRAFT_0876at 890.910 kb on - strand, within B158DRAFT_0876at 890.910 kb on - strand, within B158DRAFT_0876at 890.910 kb on - strand, within B158DRAFT_0876at 890.910 kb on - strand, within B158DRAFT_0876at 890.942 kb on + strand, within B158DRAFT_0876at 890.945 kb on + strand, within B158DRAFT_0876at 890.952 kb on + strand, within B158DRAFT_0876at 890.967 kb on - strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.976 kb on + strand, within B158DRAFT_0876at 890.984 kb on - strand, within B158DRAFT_0876at 890.984 kb on - strand, within B158DRAFT_0876at 890.996 kb on + strand, within B158DRAFT_0876at 890.996 kb on + strand, within B158DRAFT_0876at 891.004 kb on - strand, within B158DRAFT_0876at 891.008 kb on + strand, within B158DRAFT_0876at 891.034 kb on + strand, within B158DRAFT_0876at 891.089 kb on + strand, within B158DRAFT_0876at 891.090 kb on - strand, within B158DRAFT_0876at 891.123 kb on - strand, within B158DRAFT_0876at 891.167 kb on + strand, within B158DRAFT_0876at 891.167 kb on + strand, within B158DRAFT_0876at 891.167 kb on + strand, within B158DRAFT_0876at 891.167 kb on + strand, within B158DRAFT_0876at 891.167 kb on + strand, within B158DRAFT_0876at 891.167 kb on + strand, within B158DRAFT_0876at 891.169 kb on + strand, within B158DRAFT_0876at 891.175 kb on - strand, within B158DRAFT_0876at 891.175 kb on - strand, within B158DRAFT_0876at 891.175 kb on - strand, within B158DRAFT_0876at 891.175 kb on - strand, within B158DRAFT_0876at 891.175 kb on - strand, within B158DRAFT_0876at 891.177 kb on + strand, within B158DRAFT_0876at 891.187 kb on + strand, within B158DRAFT_0876at 891.187 kb on + strand, within B158DRAFT_0876at 891.187 kb on + strand, within B158DRAFT_0876at 891.193 kb on + strand, within B158DRAFT_0876at 891.193 kb on - strand, within B158DRAFT_0876at 891.245 kb on + strand, within B158DRAFT_0876at 891.245 kb on + strand, within B158DRAFT_0876at 891.245 kb on + strand, within B158DRAFT_0876at 891.296 kb on - strand, within B158DRAFT_0876at 891.303 kb on - strand, within B158DRAFT_0876at 891.303 kb on - strand, within B158DRAFT_0876at 891.312 kb on + strand, within B158DRAFT_0876at 891.320 kb on - strand, within B158DRAFT_0876at 891.327 kb on + strand, within B158DRAFT_0876at 891.335 kb on - strand, within B158DRAFT_0876at 891.335 kb on - strand, within B158DRAFT_0876at 891.335 kb on - strand, within B158DRAFT_0876at 891.335 kb on - strand, within B158DRAFT_0876at 891.367 kb on + strand, within B158DRAFT_0876at 891.367 kb on + strand, within B158DRAFT_0876at 891.367 kb on + strand, within B158DRAFT_0876at 891.375 kb on - strand, within B158DRAFT_0876at 891.432 kb on + strand, within B158DRAFT_0876at 891.437 kb on + strand, within B158DRAFT_0876at 891.440 kb on - strand, within B158DRAFT_0876at 891.456 kb on + strand, within B158DRAFT_0876at 891.457 kb on - strand, within B158DRAFT_0876

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0032 mM
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889,265 + B158DRAFT_0873 0.32 -4.1
889,282 - B158DRAFT_0873 0.34 -3.0
889,313 + B158DRAFT_0873 0.38 -2.7
889,321 - B158DRAFT_0873 0.39 -2.9
889,321 - B158DRAFT_0873 0.39 -2.3
889,321 - B158DRAFT_0873 0.39 -1.9
889,401 + B158DRAFT_0873 0.49 -2.0
889,475 + B158DRAFT_0873 0.57 -1.8
889,483 - B158DRAFT_0873 0.58 -3.2
889,483 - B158DRAFT_0873 0.58 -2.8
889,483 - B158DRAFT_0873 0.58 -2.6
889,530 + B158DRAFT_0873 0.64 -3.3
889,530 + B158DRAFT_0873 0.64 -1.6
889,538 - B158DRAFT_0873 0.65 -2.8
889,538 - B158DRAFT_0873 0.65 -2.6
889,538 - B158DRAFT_0873 0.65 -3.3
889,559 + B158DRAFT_0873 0.68 -2.6
889,559 + B158DRAFT_0873 0.68 -2.7
889,780 + -2.2
889,793 - -2.9
889,793 - -1.0
889,798 - -2.1
889,831 - -0.6
889,835 + -0.1
889,845 - -0.1
889,884 + -0.2
889,884 + -0.2
889,892 - +0.3
889,892 - -0.0
889,892 - +0.1
889,911 + +1.0
889,919 - -0.4
889,926 + -0.3
890,310 + B158DRAFT_0875 0.39 -1.6
890,396 - B158DRAFT_0875 0.66 -2.1
890,396 - B158DRAFT_0875 0.66 -1.8
890,396 - B158DRAFT_0875 0.66 -1.8
890,396 - B158DRAFT_0875 0.66 -0.6
890,396 - B158DRAFT_0875 0.66 -2.3
890,398 - B158DRAFT_0875 0.67 -1.9
890,406 + B158DRAFT_0875 0.70 -2.4
890,406 + B158DRAFT_0875 0.70 -1.2
890,406 + B158DRAFT_0875 0.70 -1.3
890,406 + B158DRAFT_0875 0.70 -1.3
890,414 - B158DRAFT_0875 0.72 -0.7
890,414 - B158DRAFT_0875 0.72 -2.1
890,424 + B158DRAFT_0875 0.75 -0.2
890,424 + B158DRAFT_0875 0.75 -1.9
890,424 + B158DRAFT_0875 0.75 -1.6
890,432 - B158DRAFT_0875 0.78 -1.4
890,446 - B158DRAFT_0875 0.82 -1.9
890,446 - B158DRAFT_0875 0.82 -1.3
890,547 + -2.0
890,552 + -2.0
890,555 - -0.9
890,706 - -0.1
890,723 + +0.4
890,723 + +0.5
890,723 + -0.6
890,723 + +0.1
890,723 + +0.2
890,723 + +0.9
890,730 + +0.1
890,730 + +0.7
890,730 + -0.3
890,731 - +0.4
890,731 - -0.1
890,731 - +0.1
890,738 - -0.9
890,755 + B158DRAFT_0876 0.11 -0.1
890,828 + B158DRAFT_0876 0.16 +0.4
890,829 - B158DRAFT_0876 0.16 +0.1
890,836 - B158DRAFT_0876 0.16 +0.1
890,876 - B158DRAFT_0876 0.19 +0.1
890,902 + B158DRAFT_0876 0.21 +0.1
890,902 + B158DRAFT_0876 0.21 -0.7
890,902 + B158DRAFT_0876 0.21 -0.2
890,902 + B158DRAFT_0876 0.21 -0.1
890,902 + B158DRAFT_0876 0.21 +0.2
890,902 + B158DRAFT_0876 0.21 -0.8
890,902 + B158DRAFT_0876 0.21 +0.5
890,910 - B158DRAFT_0876 0.22 -0.0
890,910 - B158DRAFT_0876 0.22 -0.1
890,910 - B158DRAFT_0876 0.22 +0.6
890,910 - B158DRAFT_0876 0.22 +0.6
890,942 + B158DRAFT_0876 0.24 -0.4
890,945 + B158DRAFT_0876 0.24 -0.6
890,952 + B158DRAFT_0876 0.25 -0.0
890,967 - B158DRAFT_0876 0.26 +0.2
890,976 + B158DRAFT_0876 0.27 -0.4
890,976 + B158DRAFT_0876 0.27 -0.3
890,976 + B158DRAFT_0876 0.27 -0.2
890,976 + B158DRAFT_0876 0.27 +0.2
890,976 + B158DRAFT_0876 0.27 +0.6
890,976 + B158DRAFT_0876 0.27 +0.1
890,976 + B158DRAFT_0876 0.27 +0.2
890,976 + B158DRAFT_0876 0.27 -0.1
890,984 - B158DRAFT_0876 0.27 -0.2
890,984 - B158DRAFT_0876 0.27 -1.9
890,996 + B158DRAFT_0876 0.28 +0.2
890,996 + B158DRAFT_0876 0.28 +1.0
891,004 - B158DRAFT_0876 0.29 -0.1
891,008 + B158DRAFT_0876 0.29 +0.2
891,034 + B158DRAFT_0876 0.31 +0.1
891,089 + B158DRAFT_0876 0.35 +0.1
891,090 - B158DRAFT_0876 0.35 +0.1
891,123 - B158DRAFT_0876 0.37 +0.3
891,167 + B158DRAFT_0876 0.40 -0.2
891,167 + B158DRAFT_0876 0.40 +1.4
891,167 + B158DRAFT_0876 0.40 +0.4
891,167 + B158DRAFT_0876 0.40 +0.6
891,167 + B158DRAFT_0876 0.40 +0.8
891,167 + B158DRAFT_0876 0.40 +0.0
891,169 + B158DRAFT_0876 0.41 +0.2
891,175 - B158DRAFT_0876 0.41 -0.5
891,175 - B158DRAFT_0876 0.41 -0.2
891,175 - B158DRAFT_0876 0.41 -0.6
891,175 - B158DRAFT_0876 0.41 -0.2
891,175 - B158DRAFT_0876 0.41 +0.1
891,177 + B158DRAFT_0876 0.41 +0.3
891,187 + B158DRAFT_0876 0.42 -0.0
891,187 + B158DRAFT_0876 0.42 +0.1
891,187 + B158DRAFT_0876 0.42 +0.4
891,193 + B158DRAFT_0876 0.42 -0.1
891,193 - B158DRAFT_0876 0.42 -0.1
891,245 + B158DRAFT_0876 0.46 +0.4
891,245 + B158DRAFT_0876 0.46 -0.3
891,245 + B158DRAFT_0876 0.46 -0.1
891,296 - B158DRAFT_0876 0.50 -0.3
891,303 - B158DRAFT_0876 0.50 -0.2
891,303 - B158DRAFT_0876 0.50 -0.2
891,312 + B158DRAFT_0876 0.51 +0.1
891,320 - B158DRAFT_0876 0.52 +0.5
891,327 + B158DRAFT_0876 0.52 -0.0
891,335 - B158DRAFT_0876 0.53 +0.5
891,335 - B158DRAFT_0876 0.53 +1.1
891,335 - B158DRAFT_0876 0.53 +0.3
891,335 - B158DRAFT_0876 0.53 +0.2
891,367 + B158DRAFT_0876 0.55 -0.2
891,367 + B158DRAFT_0876 0.55 -1.0
891,367 + B158DRAFT_0876 0.55 +0.5
891,375 - B158DRAFT_0876 0.56 -0.4
891,432 + B158DRAFT_0876 0.60 +0.9
891,437 + B158DRAFT_0876 0.60 +0.1
891,440 - B158DRAFT_0876 0.60 +0.1
891,456 + B158DRAFT_0876 0.61 +0.4
891,457 - B158DRAFT_0876 0.61 +0.1

Or see this region's nucleotide sequence