Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_778

Experiment: Fusidic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_777 and PfGW456L13_778 are separated by 138 nucleotidesPfGW456L13_778 and PfGW456L13_779 are separated by 67 nucleotidesPfGW456L13_779 and PfGW456L13_780 are separated by 24 nucleotides PfGW456L13_777 - Nucleoside-diphosphate-sugar epimerases, at 881,590 to 882,447 _777 PfGW456L13_778 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 882,586 to 883,326 _778 PfGW456L13_779 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 883,394 to 883,774 _779 PfGW456L13_780 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 883,799 to 885,904 _780 Position (kb) 882 883 884Strain fitness (log2 ratio) -2 -1 0 1 2 3at 881.601 kb on + strandat 881.601 kb on + strandat 881.785 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.843 kb on - strand, within PfGW456L13_777at 881.843 kb on - strand, within PfGW456L13_777at 881.843 kb on - strand, within PfGW456L13_777at 881.932 kb on + strand, within PfGW456L13_777at 882.051 kb on + strand, within PfGW456L13_777at 882.051 kb on + strand, within PfGW456L13_777at 882.052 kb on - strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.074 kb on - strand, within PfGW456L13_777at 882.074 kb on - strand, within PfGW456L13_777at 882.074 kb on - strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.146 kb on - strand, within PfGW456L13_777at 882.146 kb on - strand, within PfGW456L13_777at 882.146 kb on - strand, within PfGW456L13_777at 882.235 kb on + strand, within PfGW456L13_777at 882.236 kb on - strand, within PfGW456L13_777at 882.236 kb on - strand, within PfGW456L13_777at 882.236 kb on - strand, within PfGW456L13_777at 882.295 kb on + strand, within PfGW456L13_777at 882.296 kb on - strand, within PfGW456L13_777at 882.296 kb on - strand, within PfGW456L13_777at 882.360 kb on + strand, within PfGW456L13_777at 882.360 kb on + strand, within PfGW456L13_777at 882.360 kb on + strand, within PfGW456L13_777at 882.361 kb on - strand, within PfGW456L13_777at 882.361 kb on - strand, within PfGW456L13_777at 882.361 kb on - strand, within PfGW456L13_777at 882.398 kb on - strandat 882.461 kb on + strandat 882.462 kb on - strandat 882.500 kb on + strandat 882.500 kb on + strandat 882.501 kb on - strandat 882.501 kb on - strandat 882.526 kb on + strandat 882.526 kb on + strandat 882.527 kb on - strandat 882.527 kb on - strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.588 kb on - strandat 882.588 kb on - strandat 882.626 kb on + strandat 882.627 kb on - strandat 882.627 kb on - strandat 882.791 kb on + strand, within PfGW456L13_778at 882.792 kb on - strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.903 kb on - strand, within PfGW456L13_778at 882.903 kb on - strand, within PfGW456L13_778at 882.959 kb on - strand, within PfGW456L13_778at 883.050 kb on - strand, within PfGW456L13_778at 883.050 kb on - strand, within PfGW456L13_778at 883.121 kb on + strand, within PfGW456L13_778at 883.172 kb on + strand, within PfGW456L13_778at 883.352 kb on - strandat 883.389 kb on - strandat 883.395 kb on + strandat 883.395 kb on + strandat 883.395 kb on + strandat 883.396 kb on - strandat 883.491 kb on + strand, within PfGW456L13_779at 883.491 kb on + strand, within PfGW456L13_779at 883.491 kb on + strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.727 kb on - strand, within PfGW456L13_779at 883.727 kb on - strand, within PfGW456L13_779at 883.759 kb on + strandat 883.776 kb on + strandat 883.776 kb on + strandat 883.776 kb on + strandat 883.776 kb on - strandat 883.777 kb on - strandat 883.777 kb on - strandat 883.777 kb on - strandat 883.777 kb on - strandat 883.788 kb on + strandat 883.788 kb on + strandat 883.788 kb on + strandat 883.788 kb on + strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.792 kb on + strandat 883.792 kb on + strandat 883.801 kb on - strandat 884.295 kb on + strand, within PfGW456L13_780

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml
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881,601 + +0.3
881,601 + -0.5
881,785 + PfGW456L13_777 0.23 -0.6
881,794 + PfGW456L13_777 0.24 +1.5
881,794 + PfGW456L13_777 0.24 +0.8
881,794 + PfGW456L13_777 0.24 +1.1
881,794 + PfGW456L13_777 0.24 -0.7
881,795 - PfGW456L13_777 0.24 +0.6
881,795 - PfGW456L13_777 0.24 -0.5
881,795 - PfGW456L13_777 0.24 +0.5
881,795 - PfGW456L13_777 0.24 +2.8
881,842 + PfGW456L13_777 0.29 -0.9
881,842 + PfGW456L13_777 0.29 -0.5
881,842 + PfGW456L13_777 0.29 +0.1
881,842 + PfGW456L13_777 0.29 -1.1
881,842 + PfGW456L13_777 0.29 +0.5
881,842 + PfGW456L13_777 0.29 +0.4
881,842 + PfGW456L13_777 0.29 +0.5
881,843 - PfGW456L13_777 0.29 -0.0
881,843 - PfGW456L13_777 0.29 +0.1
881,843 - PfGW456L13_777 0.29 +0.5
881,932 + PfGW456L13_777 0.40 +0.2
882,051 + PfGW456L13_777 0.54 -0.1
882,051 + PfGW456L13_777 0.54 -0.7
882,052 - PfGW456L13_777 0.54 -0.0
882,073 + PfGW456L13_777 0.56 +1.3
882,073 + PfGW456L13_777 0.56 -0.1
882,073 + PfGW456L13_777 0.56 +1.0
882,073 + PfGW456L13_777 0.56 +1.0
882,074 - PfGW456L13_777 0.56 +0.0
882,074 - PfGW456L13_777 0.56 -0.2
882,074 - PfGW456L13_777 0.56 -0.1
882,145 + PfGW456L13_777 0.65 -0.3
882,145 + PfGW456L13_777 0.65 +0.0
882,145 + PfGW456L13_777 0.65 -1.0
882,145 + PfGW456L13_777 0.65 +0.4
882,145 + PfGW456L13_777 0.65 +0.4
882,145 + PfGW456L13_777 0.65 +1.3
882,146 - PfGW456L13_777 0.65 +0.1
882,146 - PfGW456L13_777 0.65 -1.1
882,146 - PfGW456L13_777 0.65 -0.2
882,235 + PfGW456L13_777 0.75 +0.7
882,236 - PfGW456L13_777 0.75 +1.0
882,236 - PfGW456L13_777 0.75 -0.3
882,236 - PfGW456L13_777 0.75 -0.5
882,295 + PfGW456L13_777 0.82 -0.2
882,296 - PfGW456L13_777 0.82 -0.1
882,296 - PfGW456L13_777 0.82 +0.2
882,360 + PfGW456L13_777 0.90 +0.3
882,360 + PfGW456L13_777 0.90 +0.1
882,360 + PfGW456L13_777 0.90 -0.5
882,361 - PfGW456L13_777 0.90 -1.1
882,361 - PfGW456L13_777 0.90 -0.7
882,361 - PfGW456L13_777 0.90 +1.2
882,398 - +0.4
882,461 + -0.1
882,462 - +0.5
882,500 + +0.6
882,500 + +0.9
882,501 - +0.4
882,501 - -1.9
882,526 + +1.0
882,526 + +0.3
882,527 - -1.7
882,527 - -0.2
882,587 + -0.1
882,587 + -0.9
882,587 + +0.5
882,587 + -0.9
882,588 - +1.2
882,588 - +0.6
882,626 + +0.5
882,627 - -0.1
882,627 - +0.6
882,791 + PfGW456L13_778 0.28 +0.1
882,792 - PfGW456L13_778 0.28 -1.5
882,893 + PfGW456L13_778 0.41 +0.1
882,893 + PfGW456L13_778 0.41 -0.9
882,893 + PfGW456L13_778 0.41 -1.9
882,893 + PfGW456L13_778 0.41 +0.0
882,893 + PfGW456L13_778 0.41 +0.4
882,893 + PfGW456L13_778 0.41 +0.1
882,893 + PfGW456L13_778 0.41 -0.7
882,894 - PfGW456L13_778 0.42 -0.2
882,894 - PfGW456L13_778 0.42 +0.1
882,894 - PfGW456L13_778 0.42 -0.1
882,894 - PfGW456L13_778 0.42 +0.5
882,894 - PfGW456L13_778 0.42 -0.9
882,894 - PfGW456L13_778 0.42 -0.5
882,902 + PfGW456L13_778 0.43 -1.5
882,902 + PfGW456L13_778 0.43 -1.0
882,902 + PfGW456L13_778 0.43 -1.0
882,903 - PfGW456L13_778 0.43 -0.3
882,903 - PfGW456L13_778 0.43 -0.2
882,959 - PfGW456L13_778 0.50 -0.0
883,050 - PfGW456L13_778 0.63 +0.2
883,050 - PfGW456L13_778 0.63 +0.3
883,121 + PfGW456L13_778 0.72 -0.0
883,172 + PfGW456L13_778 0.79 -0.6
883,352 - +0.5
883,389 - +0.5
883,395 + -0.2
883,395 + -0.1
883,395 + +0.5
883,396 - -0.1
883,491 + PfGW456L13_779 0.25 +0.5
883,491 + PfGW456L13_779 0.25 -0.1
883,491 + PfGW456L13_779 0.25 +0.3
883,492 - PfGW456L13_779 0.26 -0.3
883,492 - PfGW456L13_779 0.26 +0.2
883,492 - PfGW456L13_779 0.26 +0.2
883,492 - PfGW456L13_779 0.26 -0.1
883,492 - PfGW456L13_779 0.26 +0.2
883,689 + PfGW456L13_779 0.77 -1.2
883,689 + PfGW456L13_779 0.77 -0.9
883,689 + PfGW456L13_779 0.77 +2.5
883,689 + PfGW456L13_779 0.77 +0.3
883,689 + PfGW456L13_779 0.77 -1.8
883,689 + PfGW456L13_779 0.77 -1.9
883,689 + PfGW456L13_779 0.77 +0.8
883,689 + PfGW456L13_779 0.77 +1.9
883,689 + PfGW456L13_779 0.77 -0.1
883,689 + PfGW456L13_779 0.77 -1.5
883,690 - PfGW456L13_779 0.78 +0.7
883,690 - PfGW456L13_779 0.78 +0.5
883,690 - PfGW456L13_779 0.78 +0.2
883,690 - PfGW456L13_779 0.78 +0.1
883,690 - PfGW456L13_779 0.78 +0.7
883,690 - PfGW456L13_779 0.78 -0.9
883,690 - PfGW456L13_779 0.78 -0.3
883,690 - PfGW456L13_779 0.78 +0.2
883,690 - PfGW456L13_779 0.78 -1.0
883,690 - PfGW456L13_779 0.78 +1.0
883,690 - PfGW456L13_779 0.78 -0.9
883,690 - PfGW456L13_779 0.78 -0.3
883,690 - PfGW456L13_779 0.78 +0.8
883,722 + PfGW456L13_779 0.86 +1.1
883,722 + PfGW456L13_779 0.86 +0.1
883,722 + PfGW456L13_779 0.86 +0.0
883,722 + PfGW456L13_779 0.86 +0.7
883,722 + PfGW456L13_779 0.86 -0.8
883,722 + PfGW456L13_779 0.86 -0.5
883,723 - PfGW456L13_779 0.86 +1.2
883,723 - PfGW456L13_779 0.86 -0.5
883,723 - PfGW456L13_779 0.86 +1.7
883,723 - PfGW456L13_779 0.86 +0.0
883,723 - PfGW456L13_779 0.86 +0.2
883,723 - PfGW456L13_779 0.86 -0.2
883,723 - PfGW456L13_779 0.86 +1.3
883,727 - PfGW456L13_779 0.87 +0.1
883,727 - PfGW456L13_779 0.87 +0.5
883,759 + -1.9
883,776 + +0.7
883,776 + -0.0
883,776 + -1.5
883,776 - -0.1
883,777 - -0.4
883,777 - -1.9
883,777 - +1.5
883,777 - -1.1
883,788 + -1.5
883,788 + -2.5
883,788 + +0.1
883,788 + +0.5
883,789 - +3.0
883,789 - -0.9
883,789 - -1.4
883,789 - -0.2
883,789 - -0.1
883,789 - -0.5
883,792 + -0.9
883,792 + +0.2
883,801 - -1.4
884,295 + PfGW456L13_780 0.24 +0.3

Or see this region's nucleotide sequence