Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_514

Experiment: Fusidic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_512 and PfGW456L13_513 are separated by 2 nucleotidesPfGW456L13_513 and PfGW456L13_514 are separated by 12 nucleotidesPfGW456L13_514 and PfGW456L13_515 overlap by 17 nucleotides PfGW456L13_512 - Putative membrane-bound ClpP-class protease associated with aq_911, at 585,313 to 585,774 _512 PfGW456L13_513 - Putative stomatin/prohibitin-family membrane protease subunit aq_911, at 585,777 to 586,535 _513 PfGW456L13_514 - Adenylylsulfate kinase (EC 2.7.1.25), at 586,548 to 587,153 _514 PfGW456L13_515 - Outer membrane protein assembly factor YaeT precursor, at 587,137 to 588,651 _515 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1 2at 585.772 kb on + strandat 585.772 kb on + strandat 585.772 kb on + strandat 585.773 kb on - strandat 585.773 kb on - strandat 585.773 kb on - strandat 585.808 kb on + strandat 585.808 kb on + strandat 585.808 kb on + strandat 585.809 kb on - strandat 586.041 kb on + strand, within PfGW456L13_513at 586.041 kb on + strand, within PfGW456L13_513at 586.428 kb on + strand, within PfGW456L13_513at 586.429 kb on - strand, within PfGW456L13_513at 586.429 kb on - strand, within PfGW456L13_513at 586.664 kb on - strand, within PfGW456L13_514at 586.717 kb on + strand, within PfGW456L13_514at 586.718 kb on - strand, within PfGW456L13_514at 587.065 kb on - strand, within PfGW456L13_514at 587.065 kb on - strand, within PfGW456L13_514at 587.169 kb on + strandat 587.170 kb on - strandat 587.170 kb on - strandat 587.172 kb on + strandat 587.173 kb on - strandat 587.173 kb on - strandat 587.173 kb on - strandat 587.292 kb on - strand, within PfGW456L13_515at 587.292 kb on - strand, within PfGW456L13_515at 587.312 kb on + strand, within PfGW456L13_515at 587.312 kb on + strand, within PfGW456L13_515at 587.346 kb on + strand, within PfGW456L13_515at 587.346 kb on + strand, within PfGW456L13_515at 587.346 kb on + strand, within PfGW456L13_515at 587.347 kb on - strand, within PfGW456L13_515at 587.347 kb on - strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.498 kb on + strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.499 kb on - strand, within PfGW456L13_515at 587.672 kb on + strand, within PfGW456L13_515at 587.673 kb on - strand, within PfGW456L13_515at 587.756 kb on + strand, within PfGW456L13_515at 587.757 kb on - strand, within PfGW456L13_515at 587.840 kb on + strand, within PfGW456L13_515at 588.118 kb on + strand, within PfGW456L13_515at 588.118 kb on + strand, within PfGW456L13_515at 588.118 kb on + strand, within PfGW456L13_515at 588.118 kb on + strand, within PfGW456L13_515at 588.118 kb on + strand, within PfGW456L13_515at 588.119 kb on - strand, within PfGW456L13_515at 588.119 kb on - strand, within PfGW456L13_515at 588.119 kb on - strand, within PfGW456L13_515at 588.119 kb on - strand, within PfGW456L13_515at 588.119 kb on - strand, within PfGW456L13_515

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml
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585,772 + +0.3
585,772 + +0.0
585,772 + +0.0
585,773 - +0.9
585,773 - +0.5
585,773 - -0.1
585,808 + +0.7
585,808 + +0.5
585,808 + -0.0
585,809 - -0.3
586,041 + PfGW456L13_513 0.35 +0.5
586,041 + PfGW456L13_513 0.35 +0.3
586,428 + PfGW456L13_513 0.86 +0.5
586,429 - PfGW456L13_513 0.86 +0.2
586,429 - PfGW456L13_513 0.86 +0.5
586,664 - PfGW456L13_514 0.19 -0.5
586,717 + PfGW456L13_514 0.28 -1.2
586,718 - PfGW456L13_514 0.28 -1.0
587,065 - PfGW456L13_514 0.85 +1.0
587,065 - PfGW456L13_514 0.85 -0.2
587,169 + +2.4
587,170 - -0.3
587,170 - +1.2
587,172 + +0.3
587,173 - +0.3
587,173 - +0.8
587,173 - -0.7
587,292 - PfGW456L13_515 0.10 -0.5
587,292 - PfGW456L13_515 0.10 +0.2
587,312 + PfGW456L13_515 0.12 -1.8
587,312 + PfGW456L13_515 0.12 -0.5
587,346 + PfGW456L13_515 0.14 +1.2
587,346 + PfGW456L13_515 0.14 +0.4
587,346 + PfGW456L13_515 0.14 +0.3
587,347 - PfGW456L13_515 0.14 -0.1
587,347 - PfGW456L13_515 0.14 -0.1
587,498 + PfGW456L13_515 0.24 -0.4
587,498 + PfGW456L13_515 0.24 +0.2
587,498 + PfGW456L13_515 0.24 -0.1
587,498 + PfGW456L13_515 0.24 -0.9
587,498 + PfGW456L13_515 0.24 +0.3
587,498 + PfGW456L13_515 0.24 +0.4
587,498 + PfGW456L13_515 0.24 +1.7
587,498 + PfGW456L13_515 0.24 +0.5
587,498 + PfGW456L13_515 0.24 +1.0
587,498 + PfGW456L13_515 0.24 -0.4
587,498 + PfGW456L13_515 0.24 +0.6
587,498 + PfGW456L13_515 0.24 +0.2
587,498 + PfGW456L13_515 0.24 -0.4
587,498 + PfGW456L13_515 0.24 +0.6
587,498 + PfGW456L13_515 0.24 +0.2
587,498 + PfGW456L13_515 0.24 +1.6
587,498 + PfGW456L13_515 0.24 -0.2
587,499 - PfGW456L13_515 0.24 -1.3
587,499 - PfGW456L13_515 0.24 +0.3
587,499 - PfGW456L13_515 0.24 +0.2
587,499 - PfGW456L13_515 0.24 -0.1
587,499 - PfGW456L13_515 0.24 +1.5
587,499 - PfGW456L13_515 0.24 -0.5
587,499 - PfGW456L13_515 0.24 -2.0
587,499 - PfGW456L13_515 0.24 +0.2
587,499 - PfGW456L13_515 0.24 -0.0
587,499 - PfGW456L13_515 0.24 -0.9
587,499 - PfGW456L13_515 0.24 -0.1
587,499 - PfGW456L13_515 0.24 +0.2
587,499 - PfGW456L13_515 0.24 +1.0
587,499 - PfGW456L13_515 0.24 +0.3
587,499 - PfGW456L13_515 0.24 -0.2
587,499 - PfGW456L13_515 0.24 +0.4
587,499 - PfGW456L13_515 0.24 -0.4
587,499 - PfGW456L13_515 0.24 +0.6
587,499 - PfGW456L13_515 0.24 -0.3
587,499 - PfGW456L13_515 0.24 +0.2
587,499 - PfGW456L13_515 0.24 -0.4
587,499 - PfGW456L13_515 0.24 +0.8
587,499 - PfGW456L13_515 0.24 -0.3
587,672 + PfGW456L13_515 0.35 -0.5
587,673 - PfGW456L13_515 0.35 +0.5
587,756 + PfGW456L13_515 0.41 +0.2
587,757 - PfGW456L13_515 0.41 +0.7
587,840 + PfGW456L13_515 0.46 -0.3
588,118 + PfGW456L13_515 0.65 +0.7
588,118 + PfGW456L13_515 0.65 +0.4
588,118 + PfGW456L13_515 0.65 -0.3
588,118 + PfGW456L13_515 0.65 +0.4
588,118 + PfGW456L13_515 0.65 +0.4
588,119 - PfGW456L13_515 0.65 -0.7
588,119 - PfGW456L13_515 0.65 -0.6
588,119 - PfGW456L13_515 0.65 -0.5
588,119 - PfGW456L13_515 0.65 -0.1
588,119 - PfGW456L13_515 0.65 -1.2

Or see this region's nucleotide sequence