Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4365

Experiment: Fusidic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4364 and PfGW456L13_4365 are separated by 90 nucleotidesPfGW456L13_4365 and PfGW456L13_4366 are separated by 271 nucleotides PfGW456L13_4364 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,873,652 to 4,874,944 _4364 PfGW456L13_4365 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 4,875,035 to 4,875,916 _4365 PfGW456L13_4366 - N-acetylneuraminate synthase (EC 2.5.1.56), at 4,876,188 to 4,877,240 _4366 Position (kb) 4875 4876Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4874.100 kb on + strand, within PfGW456L13_4364at 4874.100 kb on + strand, within PfGW456L13_4364at 4874.101 kb on - strand, within PfGW456L13_4364at 4874.114 kb on - strand, within PfGW456L13_4364at 4874.211 kb on + strandat 4874.211 kb on + strand, within PfGW456L13_4364at 4874.211 kb on + strand, within PfGW456L13_4364at 4874.211 kb on + strand, within PfGW456L13_4364at 4874.212 kb on - strand, within PfGW456L13_4364at 4874.212 kb on - strand, within PfGW456L13_4364at 4874.212 kb on - strand, within PfGW456L13_4364at 4874.212 kb on - strand, within PfGW456L13_4364at 4874.313 kb on + strand, within PfGW456L13_4364at 4874.313 kb on + strand, within PfGW456L13_4364at 4874.313 kb on + strand, within PfGW456L13_4364at 4874.313 kb on + strand, within PfGW456L13_4364at 4874.314 kb on - strand, within PfGW456L13_4364at 4874.314 kb on - strand, within PfGW456L13_4364at 4874.314 kb on - strand, within PfGW456L13_4364at 4874.314 kb on - strand, within PfGW456L13_4364at 4874.372 kb on + strand, within PfGW456L13_4364at 4874.372 kb on + strand, within PfGW456L13_4364at 4874.559 kb on + strand, within PfGW456L13_4364at 4874.559 kb on + strand, within PfGW456L13_4364at 4874.652 kb on + strand, within PfGW456L13_4364at 4874.653 kb on - strand, within PfGW456L13_4364at 4874.653 kb on - strand, within PfGW456L13_4364at 4874.653 kb on - strand, within PfGW456L13_4364at 4874.886 kb on + strandat 4874.887 kb on - strandat 4874.947 kb on + strandat 4874.947 kb on + strandat 4874.947 kb on + strandat 4874.947 kb on + strandat 4874.948 kb on - strandat 4874.948 kb on - strandat 4874.948 kb on - strandat 4874.948 kb on - strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.962 kb on - strandat 4874.962 kb on - strandat 4874.962 kb on - strandat 4875.045 kb on + strandat 4875.045 kb on + strandat 4875.045 kb on + strandat 4875.045 kb on + strandat 4875.045 kb on + strandat 4875.045 kb on + strandat 4875.046 kb on - strandat 4875.046 kb on - strandat 4875.046 kb on - strandat 4875.046 kb on - strandat 4875.046 kb on - strandat 4875.046 kb on - strandat 4875.049 kb on + strandat 4875.049 kb on + strandat 4875.049 kb on + strandat 4875.049 kb on + strandat 4875.050 kb on - strandat 4875.122 kb on - strandat 4875.466 kb on + strand, within PfGW456L13_4365at 4875.531 kb on + strand, within PfGW456L13_4365at 4875.597 kb on + strand, within PfGW456L13_4365at 4875.597 kb on + strand, within PfGW456L13_4365at 4875.598 kb on - strand, within PfGW456L13_4365at 4875.598 kb on - strand, within PfGW456L13_4365at 4875.613 kb on - strand, within PfGW456L13_4365at 4875.906 kb on + strandat 4875.906 kb on + strandat 4875.906 kb on + strandat 4875.906 kb on + strandat 4875.906 kb on + strandat 4875.907 kb on - strandat 4875.907 kb on - strandat 4875.907 kb on - strandat 4875.933 kb on + strandat 4875.933 kb on + strandat 4875.933 kb on + strandat 4875.933 kb on + strandat 4875.933 kb on + strandat 4875.934 kb on - strandat 4875.934 kb on - strandat 4875.934 kb on - strandat 4875.950 kb on + strandat 4875.962 kb on + strandat 4875.976 kb on - strandat 4875.978 kb on + strandat 4875.979 kb on - strandat 4875.991 kb on - strandat 4876.066 kb on - strandat 4876.089 kb on - strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.118 kb on + strandat 4876.119 kb on - strandat 4876.119 kb on - strandat 4876.119 kb on - strandat 4876.119 kb on - strandat 4876.119 kb on - strandat 4876.119 kb on - strandat 4876.119 kb on - strandat 4876.123 kb on + strandat 4876.123 kb on + strandat 4876.123 kb on + strandat 4876.123 kb on + strandat 4876.123 kb on + strandat 4876.123 kb on + strandat 4876.123 kb on + strandat 4876.123 kb on + strandat 4876.124 kb on - strandat 4876.124 kb on - strandat 4876.124 kb on - strandat 4876.141 kb on + strandat 4876.160 kb on + strandat 4876.350 kb on + strand, within PfGW456L13_4366at 4876.351 kb on - strand, within PfGW456L13_4366at 4876.351 kb on - strand, within PfGW456L13_4366at 4876.351 kb on - strand, within PfGW456L13_4366at 4876.354 kb on + strandat 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strandat 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.354 kb on + strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.355 kb on - strand, within PfGW456L13_4366at 4876.364 kb on + strand, within PfGW456L13_4366at 4876.364 kb on + strand, within PfGW456L13_4366at 4876.364 kb on + strand, within PfGW456L13_4366at 4876.364 kb on + strand, within PfGW456L13_4366at 4876.364 kb on + strand, within PfGW456L13_4366at 4876.365 kb on - strand, within PfGW456L13_4366at 4876.365 kb on - strand, within PfGW456L13_4366at 4876.365 kb on - strand, within PfGW456L13_4366at 4876.365 kb on - strand, within PfGW456L13_4366at 4876.365 kb on - strand, within PfGW456L13_4366at 4876.365 kb on - strand, within PfGW456L13_4366at 4876.369 kb on + strand, within PfGW456L13_4366at 4876.369 kb on + strand, within PfGW456L13_4366at 4876.405 kb on + strand, within PfGW456L13_4366at 4876.406 kb on - strand, within PfGW456L13_4366at 4876.672 kb on + strand, within PfGW456L13_4366at 4876.673 kb on - strand, within PfGW456L13_4366at 4876.809 kb on + strand, within PfGW456L13_4366at 4876.849 kb on + strand, within PfGW456L13_4366at 4876.850 kb on - strand, within PfGW456L13_4366at 4876.905 kb on - strand, within PfGW456L13_4366at 4876.905 kb on - strand, within PfGW456L13_4366

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml
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4,874,100 + PfGW456L13_4364 0.35 -0.3
4,874,100 + PfGW456L13_4364 0.35 -0.4
4,874,101 - PfGW456L13_4364 0.35 +0.3
4,874,114 - PfGW456L13_4364 0.36 +0.7
4,874,211 + +1.3
4,874,211 + PfGW456L13_4364 0.43 -0.3
4,874,211 + PfGW456L13_4364 0.43 -1.1
4,874,211 + PfGW456L13_4364 0.43 +1.2
4,874,212 - PfGW456L13_4364 0.43 +0.5
4,874,212 - PfGW456L13_4364 0.43 +0.0
4,874,212 - PfGW456L13_4364 0.43 +0.6
4,874,212 - PfGW456L13_4364 0.43 +0.2
4,874,313 + PfGW456L13_4364 0.51 +1.4
4,874,313 + PfGW456L13_4364 0.51 +0.1
4,874,313 + PfGW456L13_4364 0.51 +0.8
4,874,313 + PfGW456L13_4364 0.51 +0.4
4,874,314 - PfGW456L13_4364 0.51 +0.3
4,874,314 - PfGW456L13_4364 0.51 +0.6
4,874,314 - PfGW456L13_4364 0.51 -0.1
4,874,314 - PfGW456L13_4364 0.51 -0.7
4,874,372 + PfGW456L13_4364 0.56 -0.2
4,874,372 + PfGW456L13_4364 0.56 -0.2
4,874,559 + PfGW456L13_4364 0.70 -0.5
4,874,559 + PfGW456L13_4364 0.70 -1.3
4,874,652 + PfGW456L13_4364 0.77 +0.4
4,874,653 - PfGW456L13_4364 0.77 +0.7
4,874,653 - PfGW456L13_4364 0.77 +3.2
4,874,653 - PfGW456L13_4364 0.77 +0.7
4,874,886 + -0.6
4,874,887 - +0.2
4,874,947 + -0.5
4,874,947 + -1.0
4,874,947 + +0.5
4,874,947 + +0.0
4,874,948 - +0.9
4,874,948 - +0.6
4,874,948 - -0.1
4,874,948 - -0.4
4,874,961 + -0.6
4,874,961 + -0.1
4,874,961 + +0.8
4,874,961 + -0.3
4,874,961 + +0.5
4,874,961 + +0.4
4,874,961 + -0.3
4,874,961 + +1.3
4,874,962 - +0.5
4,874,962 - -0.4
4,874,962 - -0.8
4,875,045 + -0.6
4,875,045 + -1.0
4,875,045 + -0.8
4,875,045 + -0.7
4,875,045 + -0.5
4,875,045 + -0.4
4,875,046 - -1.7
4,875,046 - +1.0
4,875,046 - -4.2
4,875,046 - +0.2
4,875,046 - -2.2
4,875,046 - -0.2
4,875,049 + -2.2
4,875,049 + -1.5
4,875,049 + +1.9
4,875,049 + -0.8
4,875,050 - -0.9
4,875,122 - +0.5
4,875,466 + PfGW456L13_4365 0.49 -0.9
4,875,531 + PfGW456L13_4365 0.56 -1.4
4,875,597 + PfGW456L13_4365 0.64 -1.0
4,875,597 + PfGW456L13_4365 0.64 -0.9
4,875,598 - PfGW456L13_4365 0.64 -1.1
4,875,598 - PfGW456L13_4365 0.64 -2.2
4,875,613 - PfGW456L13_4365 0.66 +1.5
4,875,906 + -2.2
4,875,906 + -1.7
4,875,906 + -1.1
4,875,906 + -0.1
4,875,906 + -0.9
4,875,907 - -1.5
4,875,907 - -1.2
4,875,907 - -1.2
4,875,933 + -0.6
4,875,933 + -1.0
4,875,933 + +0.3
4,875,933 + -0.3
4,875,933 + -0.1
4,875,934 - -1.2
4,875,934 - +0.4
4,875,934 - -0.3
4,875,950 + -0.2
4,875,962 + -0.9
4,875,976 - -0.5
4,875,978 + -1.1
4,875,979 - +0.1
4,875,991 - +0.2
4,876,066 - -1.4
4,876,089 - -1.1
4,876,118 + +0.4
4,876,118 + -0.6
4,876,118 + -2.5
4,876,118 + -0.4
4,876,118 + -1.0
4,876,118 + -2.3
4,876,118 + -0.0
4,876,118 + -0.5
4,876,118 + +1.5
4,876,118 + -1.6
4,876,118 + -0.2
4,876,118 + +0.2
4,876,118 + -1.1
4,876,118 + -0.4
4,876,118 + -2.3
4,876,119 - +1.5
4,876,119 - -1.5
4,876,119 - -0.0
4,876,119 - +0.8
4,876,119 - -1.2
4,876,119 - +0.2
4,876,119 - -0.4
4,876,123 + -0.5
4,876,123 + -0.3
4,876,123 + -1.2
4,876,123 + -0.8
4,876,123 + -2.7
4,876,123 + -1.9
4,876,123 + -0.2
4,876,123 + -2.4
4,876,124 - -0.9
4,876,124 - -0.7
4,876,124 - -0.2
4,876,141 + -1.5
4,876,160 + +0.5
4,876,350 + PfGW456L13_4366 0.15 -0.4
4,876,351 - PfGW456L13_4366 0.15 +1.5
4,876,351 - PfGW456L13_4366 0.15 -0.7
4,876,351 - PfGW456L13_4366 0.15 +0.9
4,876,354 + +0.3
4,876,354 + PfGW456L13_4366 0.16 +2.0
4,876,354 + PfGW456L13_4366 0.16 -0.3
4,876,354 + PfGW456L13_4366 0.16 +0.7
4,876,354 + -0.1
4,876,354 + PfGW456L13_4366 0.16 -0.8
4,876,354 + PfGW456L13_4366 0.16 -0.5
4,876,354 + PfGW456L13_4366 0.16 -0.1
4,876,354 + PfGW456L13_4366 0.16 +0.9
4,876,354 + PfGW456L13_4366 0.16 +0.1
4,876,354 + PfGW456L13_4366 0.16 +0.3
4,876,354 + PfGW456L13_4366 0.16 -0.8
4,876,354 + PfGW456L13_4366 0.16 -0.4
4,876,354 + PfGW456L13_4366 0.16 +0.2
4,876,354 + PfGW456L13_4366 0.16 +0.3
4,876,354 + PfGW456L13_4366 0.16 +0.7
4,876,354 + PfGW456L13_4366 0.16 +0.4
4,876,354 + PfGW456L13_4366 0.16 +0.1
4,876,354 + PfGW456L13_4366 0.16 +0.2
4,876,354 + PfGW456L13_4366 0.16 -0.1
4,876,354 + PfGW456L13_4366 0.16 +0.7
4,876,355 - PfGW456L13_4366 0.16 +1.0
4,876,355 - PfGW456L13_4366 0.16 -1.7
4,876,355 - PfGW456L13_4366 0.16 -1.9
4,876,355 - PfGW456L13_4366 0.16 +0.3
4,876,355 - PfGW456L13_4366 0.16 +0.3
4,876,355 - PfGW456L13_4366 0.16 +1.0
4,876,355 - PfGW456L13_4366 0.16 -1.9
4,876,355 - PfGW456L13_4366 0.16 +0.0
4,876,355 - PfGW456L13_4366 0.16 +0.6
4,876,355 - PfGW456L13_4366 0.16 +0.2
4,876,355 - PfGW456L13_4366 0.16 -2.0
4,876,355 - PfGW456L13_4366 0.16 -0.7
4,876,355 - PfGW456L13_4366 0.16 +0.8
4,876,355 - PfGW456L13_4366 0.16 -0.3
4,876,355 - PfGW456L13_4366 0.16 -1.1
4,876,364 + PfGW456L13_4366 0.17 +0.7
4,876,364 + PfGW456L13_4366 0.17 -0.9
4,876,364 + PfGW456L13_4366 0.17 +0.0
4,876,364 + PfGW456L13_4366 0.17 +1.7
4,876,364 + PfGW456L13_4366 0.17 -0.4
4,876,365 - PfGW456L13_4366 0.17 -1.4
4,876,365 - PfGW456L13_4366 0.17 +0.6
4,876,365 - PfGW456L13_4366 0.17 -1.5
4,876,365 - PfGW456L13_4366 0.17 +0.4
4,876,365 - PfGW456L13_4366 0.17 -0.5
4,876,365 - PfGW456L13_4366 0.17 +0.7
4,876,369 + PfGW456L13_4366 0.17 -0.1
4,876,369 + PfGW456L13_4366 0.17 +1.1
4,876,405 + PfGW456L13_4366 0.21 +0.0
4,876,406 - PfGW456L13_4366 0.21 -0.8
4,876,672 + PfGW456L13_4366 0.46 -0.1
4,876,673 - PfGW456L13_4366 0.46 +0.2
4,876,809 + PfGW456L13_4366 0.59 -0.1
4,876,849 + PfGW456L13_4366 0.63 -1.3
4,876,850 - PfGW456L13_4366 0.63 -1.1
4,876,905 - PfGW456L13_4366 0.68 +0.6
4,876,905 - PfGW456L13_4366 0.68 -0.2

Or see this region's nucleotide sequence