Experiment: Fusidic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4342 and PfGW456L13_4343 are separated by 9 nucleotides PfGW456L13_4343 and PfGW456L13_4344 are separated by 60 nucleotides PfGW456L13_4344 and PfGW456L13_4345 overlap by 10 nucleotides PfGW456L13_4345 and PfGW456L13_4346 are separated by 100 nucleotides PfGW456L13_4346 and PfGW456L13_4347 are separated by 30 nucleotides
PfGW456L13_4342 - Flagellar motor switch protein FliM, at 4,853,456 to 4,854,424
_4342
PfGW456L13_4343 - Flagellar biosynthesis protein FliL, at 4,854,434 to 4,854,937
_4343
PfGW456L13_4344 - hypothetical protein, at 4,854,998 to 4,855,180
_4344
PfGW456L13_4345 - Flagellar hook-length control protein FliK, at 4,855,171 to 4,856,523
_4345
PfGW456L13_4346 - Hpt domain protein, at 4,856,624 to 4,856,974
_4346
PfGW456L13_4347 - Serine phosphatase RsbU, regulator of sigma subunit, at 4,857,005 to 4,858,711
_4347
Position (kb) 4855
4856
4857 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4854.235 kb on - strand, within PfGW456L13_4342 at 4854.312 kb on + strand, within PfGW456L13_4342 at 4854.312 kb on + strand, within PfGW456L13_4342 at 4854.313 kb on - strand, within PfGW456L13_4342 at 4854.313 kb on - strand, within PfGW456L13_4342 at 4854.313 kb on - strand, within PfGW456L13_4342 at 4854.313 kb on - strand, within PfGW456L13_4342 at 4854.353 kb on + strand at 4854.353 kb on + strand at 4854.435 kb on + strand at 4854.436 kb on - strand at 4854.436 kb on - strand at 4854.444 kb on - strand at 4854.444 kb on - strand at 4854.451 kb on + strand at 4854.452 kb on - strand at 4854.684 kb on + strand, within PfGW456L13_4343 at 4854.685 kb on - strand, within PfGW456L13_4343 at 4854.685 kb on - strand, within PfGW456L13_4343 at 4854.685 kb on - strand, within PfGW456L13_4343 at 4854.685 kb on - strand, within PfGW456L13_4343 at 4854.782 kb on + strand, within PfGW456L13_4343 at 4854.819 kb on + strand, within PfGW456L13_4343 at 4854.820 kb on - strand, within PfGW456L13_4343 at 4854.820 kb on - strand, within PfGW456L13_4343 at 4854.878 kb on - strand, within PfGW456L13_4343 at 4854.914 kb on + strand at 4854.914 kb on + strand at 4854.914 kb on + strand at 4854.914 kb on + strand at 4854.915 kb on - strand at 4854.943 kb on + strand at 4854.944 kb on - strand at 4854.997 kb on + strand at 4854.998 kb on - strand at 4855.008 kb on + strand at 4855.009 kb on - strand at 4855.094 kb on - strand, within PfGW456L13_4344 at 4855.119 kb on + strand, within PfGW456L13_4344 at 4855.120 kb on - strand, within PfGW456L13_4344 at 4855.156 kb on + strand, within PfGW456L13_4344 at 4855.156 kb on + strand, within PfGW456L13_4344 at 4855.156 kb on + strand, within PfGW456L13_4344 at 4855.156 kb on + strand, within PfGW456L13_4344 at 4855.156 kb on + strand, within PfGW456L13_4344 at 4855.157 kb on - strand, within PfGW456L13_4344 at 4855.178 kb on + strand at 4855.179 kb on - strand at 4855.179 kb on - strand at 4855.179 kb on - strand at 4855.182 kb on - strand at 4855.216 kb on - strand at 4855.216 kb on - strand at 4855.216 kb on - strand at 4855.568 kb on + strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.569 kb on - strand, within PfGW456L13_4345 at 4855.806 kb on + strand, within PfGW456L13_4345 at 4855.925 kb on - strand, within PfGW456L13_4345 at 4856.029 kb on + strand, within PfGW456L13_4345 at 4856.030 kb on - strand, within PfGW456L13_4345 at 4856.030 kb on - strand, within PfGW456L13_4345 at 4856.105 kb on - strand, within PfGW456L13_4345 at 4856.116 kb on + strand, within PfGW456L13_4345 at 4856.116 kb on + strand, within PfGW456L13_4345 at 4856.133 kb on + strand, within PfGW456L13_4345 at 4856.133 kb on + strand at 4856.133 kb on + strand, within PfGW456L13_4345 at 4856.133 kb on + strand, within PfGW456L13_4345 at 4856.134 kb on - strand, within PfGW456L13_4345 at 4856.134 kb on - strand, within PfGW456L13_4345 at 4856.134 kb on - strand, within PfGW456L13_4345 at 4856.134 kb on - strand, within PfGW456L13_4345 at 4856.399 kb on + strand at 4856.400 kb on - strand at 4856.400 kb on - strand at 4856.551 kb on + strand at 4856.551 kb on + strand at 4856.551 kb on + strand at 4856.551 kb on + strand at 4856.552 kb on - strand at 4856.552 kb on - strand at 4856.552 kb on - strand at 4856.552 kb on - strand at 4856.552 kb on - strand at 4856.552 kb on - strand at 4856.552 kb on - strand at 4856.556 kb on - strand at 4856.661 kb on + strand, within PfGW456L13_4346 at 4856.789 kb on - strand, within PfGW456L13_4346 at 4856.789 kb on - strand, within PfGW456L13_4346 at 4856.789 kb on - strand, within PfGW456L13_4346 at 4856.789 kb on - strand, within PfGW456L13_4346 at 4856.789 kb on - strand, within PfGW456L13_4346 at 4857.006 kb on + strand at 4857.006 kb on + strand at 4857.026 kb on - strand at 4857.026 kb on - strand at 4857.026 kb on - strand at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.233 kb on + strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.234 kb on - strand, within PfGW456L13_4347 at 4857.237 kb on + strand, within PfGW456L13_4347 at 4857.237 kb on + strand, within PfGW456L13_4347 at 4857.237 kb on + strand, within PfGW456L13_4347 at 4857.237 kb on + strand, within PfGW456L13_4347 at 4857.237 kb on + strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.238 kb on - strand, within PfGW456L13_4347 at 4857.249 kb on - strand, within PfGW456L13_4347 at 4857.249 kb on - strand, within PfGW456L13_4347 at 4857.249 kb on - strand, within PfGW456L13_4347 at 4857.279 kb on + strand, within PfGW456L13_4347 at 4857.283 kb on - strand, within PfGW456L13_4347 at 4857.357 kb on + strand, within PfGW456L13_4347 at 4857.358 kb on - strand, within PfGW456L13_4347 at 4857.358 kb on - strand, within PfGW456L13_4347 at 4857.358 kb on - strand, within PfGW456L13_4347 at 4857.378 kb on + strand, within PfGW456L13_4347 at 4857.435 kb on + strand, within PfGW456L13_4347 at 4857.435 kb on + strand, within PfGW456L13_4347 at 4857.435 kb on + strand, within PfGW456L13_4347 at 4857.435 kb on + strand, within PfGW456L13_4347 at 4857.436 kb on - strand, within PfGW456L13_4347 at 4857.436 kb on - strand, within PfGW456L13_4347 at 4857.436 kb on - strand, within PfGW456L13_4347 at 4857.486 kb on - strand, within PfGW456L13_4347 at 4857.486 kb on - strand, within PfGW456L13_4347
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml remove 4,854,235 - PfGW456L13_4342 0.80 +0.2 4,854,312 + PfGW456L13_4342 0.88 +0.9 4,854,312 + PfGW456L13_4342 0.88 +0.0 4,854,313 - PfGW456L13_4342 0.88 +0.5 4,854,313 - PfGW456L13_4342 0.88 +0.2 4,854,313 - PfGW456L13_4342 0.88 -0.2 4,854,313 - PfGW456L13_4342 0.88 -0.4 4,854,353 + +0.8 4,854,353 + +0.0 4,854,435 + +0.4 4,854,436 - -0.1 4,854,436 - -0.3 4,854,444 - +0.4 4,854,444 - -0.7 4,854,451 + +0.4 4,854,452 - +0.4 4,854,684 + PfGW456L13_4343 0.50 +0.4 4,854,685 - PfGW456L13_4343 0.50 +1.3 4,854,685 - PfGW456L13_4343 0.50 +0.0 4,854,685 - PfGW456L13_4343 0.50 +0.1 4,854,685 - PfGW456L13_4343 0.50 +0.5 4,854,782 + PfGW456L13_4343 0.69 +0.8 4,854,819 + PfGW456L13_4343 0.76 -1.0 4,854,820 - PfGW456L13_4343 0.77 -1.2 4,854,820 - PfGW456L13_4343 0.77 -1.2 4,854,878 - PfGW456L13_4343 0.88 -1.1 4,854,914 + +0.7 4,854,914 + +3.0 4,854,914 + -0.0 4,854,914 + +0.2 4,854,915 - +1.2 4,854,943 + +0.9 4,854,944 - +0.3 4,854,997 + +1.1 4,854,998 - -0.2 4,855,008 + +0.4 4,855,009 - +0.4 4,855,094 - PfGW456L13_4344 0.52 -0.8 4,855,119 + PfGW456L13_4344 0.66 +1.2 4,855,120 - PfGW456L13_4344 0.67 +0.7 4,855,156 + PfGW456L13_4344 0.86 -0.9 4,855,156 + PfGW456L13_4344 0.86 +1.1 4,855,156 + PfGW456L13_4344 0.86 +1.5 4,855,156 + PfGW456L13_4344 0.86 -0.4 4,855,156 + PfGW456L13_4344 0.86 +0.3 4,855,157 - PfGW456L13_4344 0.87 +1.5 4,855,178 + -0.4 4,855,179 - -0.9 4,855,179 - -0.2 4,855,179 - +0.5 4,855,182 - -2.7 4,855,216 - -0.1 4,855,216 - +1.0 4,855,216 - -0.6 4,855,568 + PfGW456L13_4345 0.29 +0.2 4,855,569 - PfGW456L13_4345 0.29 +0.6 4,855,569 - PfGW456L13_4345 0.29 +0.6 4,855,569 - PfGW456L13_4345 0.29 +0.2 4,855,569 - PfGW456L13_4345 0.29 -0.3 4,855,569 - PfGW456L13_4345 0.29 +1.1 4,855,569 - PfGW456L13_4345 0.29 +0.3 4,855,569 - PfGW456L13_4345 0.29 +0.5 4,855,569 - PfGW456L13_4345 0.29 -0.1 4,855,569 - PfGW456L13_4345 0.29 +1.1 4,855,569 - PfGW456L13_4345 0.29 -1.6 4,855,806 + PfGW456L13_4345 0.47 -0.4 4,855,925 - PfGW456L13_4345 0.56 +0.7 4,856,029 + PfGW456L13_4345 0.63 +0.1 4,856,030 - PfGW456L13_4345 0.63 -0.8 4,856,030 - PfGW456L13_4345 0.63 +0.9 4,856,105 - PfGW456L13_4345 0.69 +0.5 4,856,116 + PfGW456L13_4345 0.70 +0.1 4,856,116 + PfGW456L13_4345 0.70 +0.7 4,856,133 + PfGW456L13_4345 0.71 +0.4 4,856,133 + +0.3 4,856,133 + PfGW456L13_4345 0.71 -0.2 4,856,133 + PfGW456L13_4345 0.71 -0.3 4,856,134 - PfGW456L13_4345 0.71 +1.9 4,856,134 - PfGW456L13_4345 0.71 -0.2 4,856,134 - PfGW456L13_4345 0.71 +0.5 4,856,134 - PfGW456L13_4345 0.71 +0.9 4,856,399 + +0.1 4,856,400 - +2.4 4,856,400 - +0.5 4,856,551 + +0.5 4,856,551 + -1.1 4,856,551 + -0.7 4,856,551 + +0.9 4,856,552 - -1.7 4,856,552 - -1.7 4,856,552 - -0.2 4,856,552 - -0.1 4,856,552 - -1.1 4,856,552 - +0.7 4,856,552 - +0.8 4,856,556 - -1.0 4,856,661 + PfGW456L13_4346 0.11 -2.4 4,856,789 - PfGW456L13_4346 0.47 -1.1 4,856,789 - PfGW456L13_4346 0.47 +1.0 4,856,789 - PfGW456L13_4346 0.47 -1.4 4,856,789 - PfGW456L13_4346 0.47 -1.1 4,856,789 - PfGW456L13_4346 0.47 -1.7 4,857,006 + +0.5 4,857,006 + +0.2 4,857,026 - +0.8 4,857,026 - -0.7 4,857,026 - -0.4 4,857,233 + PfGW456L13_4347 0.13 -1.4 4,857,233 + PfGW456L13_4347 0.13 +1.6 4,857,233 + PfGW456L13_4347 0.13 -1.3 4,857,233 + PfGW456L13_4347 0.13 +0.9 4,857,233 + PfGW456L13_4347 0.13 +0.3 4,857,233 + PfGW456L13_4347 0.13 -0.9 4,857,233 + PfGW456L13_4347 0.13 +2.1 4,857,233 + PfGW456L13_4347 0.13 -1.1 4,857,233 + PfGW456L13_4347 0.13 -0.9 4,857,233 + PfGW456L13_4347 0.13 +0.5 4,857,233 + PfGW456L13_4347 0.13 -0.4 4,857,233 + PfGW456L13_4347 0.13 -0.6 4,857,233 + PfGW456L13_4347 0.13 +0.2 4,857,233 + PfGW456L13_4347 0.13 -0.7 4,857,233 + PfGW456L13_4347 0.13 -0.7 4,857,234 - PfGW456L13_4347 0.13 -0.1 4,857,234 - PfGW456L13_4347 0.13 -0.1 4,857,234 - PfGW456L13_4347 0.13 +0.8 4,857,234 - PfGW456L13_4347 0.13 +0.2 4,857,234 - PfGW456L13_4347 0.13 +0.6 4,857,234 - PfGW456L13_4347 0.13 -0.1 4,857,234 - PfGW456L13_4347 0.13 -0.7 4,857,234 - PfGW456L13_4347 0.13 +0.6 4,857,234 - PfGW456L13_4347 0.13 -0.0 4,857,234 - PfGW456L13_4347 0.13 -1.0 4,857,234 - PfGW456L13_4347 0.13 -1.3 4,857,234 - PfGW456L13_4347 0.13 +0.3 4,857,234 - PfGW456L13_4347 0.13 +1.3 4,857,234 - PfGW456L13_4347 0.13 -1.1 4,857,234 - PfGW456L13_4347 0.13 -0.3 4,857,234 - PfGW456L13_4347 0.13 -0.5 4,857,234 - PfGW456L13_4347 0.13 +0.6 4,857,234 - PfGW456L13_4347 0.13 +0.7 4,857,234 - PfGW456L13_4347 0.13 -1.0 4,857,234 - PfGW456L13_4347 0.13 +0.1 4,857,234 - PfGW456L13_4347 0.13 -0.0 4,857,237 + PfGW456L13_4347 0.14 -1.3 4,857,237 + PfGW456L13_4347 0.14 -0.1 4,857,237 + PfGW456L13_4347 0.14 +1.5 4,857,237 + PfGW456L13_4347 0.14 +2.6 4,857,237 + PfGW456L13_4347 0.14 -0.3 4,857,238 - PfGW456L13_4347 0.14 -0.1 4,857,238 - PfGW456L13_4347 0.14 -0.4 4,857,238 - PfGW456L13_4347 0.14 +1.5 4,857,238 - PfGW456L13_4347 0.14 -0.1 4,857,238 - PfGW456L13_4347 0.14 -1.1 4,857,238 - PfGW456L13_4347 0.14 +1.5 4,857,238 - PfGW456L13_4347 0.14 +0.7 4,857,238 - PfGW456L13_4347 0.14 -0.7 4,857,238 - PfGW456L13_4347 0.14 +1.3 4,857,238 - PfGW456L13_4347 0.14 -0.7 4,857,238 - PfGW456L13_4347 0.14 +0.1 4,857,249 - PfGW456L13_4347 0.14 +0.3 4,857,249 - PfGW456L13_4347 0.14 -1.2 4,857,249 - PfGW456L13_4347 0.14 +0.6 4,857,279 + PfGW456L13_4347 0.16 +0.5 4,857,283 - PfGW456L13_4347 0.16 -2.1 4,857,357 + PfGW456L13_4347 0.21 +0.5 4,857,358 - PfGW456L13_4347 0.21 +0.8 4,857,358 - PfGW456L13_4347 0.21 +0.5 4,857,358 - PfGW456L13_4347 0.21 +0.3 4,857,378 + PfGW456L13_4347 0.22 -0.2 4,857,435 + PfGW456L13_4347 0.25 +0.9 4,857,435 + PfGW456L13_4347 0.25 +0.5 4,857,435 + PfGW456L13_4347 0.25 +0.3 4,857,435 + PfGW456L13_4347 0.25 -1.8 4,857,436 - PfGW456L13_4347 0.25 -0.5 4,857,436 - PfGW456L13_4347 0.25 -0.8 4,857,436 - PfGW456L13_4347 0.25 -1.0 4,857,486 - PfGW456L13_4347 0.28 +0.5 4,857,486 - PfGW456L13_4347 0.28 +0.9
Or see this region's nucleotide sequence