Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3496

Experiment: Fusidic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3495 and PfGW456L13_3496 are separated by 28 nucleotidesPfGW456L13_3496 and PfGW456L13_3497 are separated by 182 nucleotides PfGW456L13_3495 - FIG01111987: hypothetical protein, at 3,935,290 to 3,935,673 _3495 PfGW456L13_3496 - Transcriptional regulator, TetR family, at 3,935,702 to 3,936,289 _3496 PfGW456L13_3497 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 3,936,472 to 3,937,437 _3497 Position (kb) 3935 3936 3937Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3934.983 kb on - strandat 3935.058 kb on + strandat 3935.059 kb on - strandat 3935.060 kb on + strandat 3935.060 kb on + strandat 3935.061 kb on - strandat 3935.061 kb on - strandat 3935.085 kb on + strandat 3935.133 kb on + strandat 3935.133 kb on + strandat 3935.133 kb on + strandat 3935.134 kb on - strandat 3935.200 kb on + strandat 3935.200 kb on + strandat 3935.201 kb on - strandat 3935.362 kb on + strand, within PfGW456L13_3495at 3935.362 kb on + strand, within PfGW456L13_3495at 3935.362 kb on + strand, within PfGW456L13_3495at 3935.362 kb on + strand, within PfGW456L13_3495at 3935.363 kb on - strand, within PfGW456L13_3495at 3935.414 kb on + strand, within PfGW456L13_3495at 3935.459 kb on - strand, within PfGW456L13_3495at 3935.546 kb on - strand, within PfGW456L13_3495at 3935.568 kb on + strand, within PfGW456L13_3495at 3935.569 kb on - strand, within PfGW456L13_3495at 3935.662 kb on + strandat 3935.984 kb on + strand, within PfGW456L13_3496at 3935.984 kb on + strand, within PfGW456L13_3496at 3935.985 kb on - strand, within PfGW456L13_3496at 3935.985 kb on - strand, within PfGW456L13_3496at 3935.985 kb on - strand, within PfGW456L13_3496at 3936.090 kb on - strand, within PfGW456L13_3496at 3936.182 kb on + strand, within PfGW456L13_3496at 3936.327 kb on + strandat 3936.328 kb on - strandat 3936.328 kb on - strandat 3936.337 kb on + strandat 3936.515 kb on - strandat 3936.522 kb on + strandat 3936.643 kb on + strandat 3936.644 kb on - strand, within PfGW456L13_3497at 3936.644 kb on - strand, within PfGW456L13_3497at 3936.644 kb on - strand, within PfGW456L13_3497at 3936.828 kb on - strand, within PfGW456L13_3497at 3936.979 kb on + strand, within PfGW456L13_3497

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml
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3,934,983 - +0.0
3,935,058 + +0.8
3,935,059 - +0.0
3,935,060 + -1.4
3,935,060 + +0.8
3,935,061 - -0.3
3,935,061 - -2.2
3,935,085 + -0.2
3,935,133 + -1.2
3,935,133 + +0.1
3,935,133 + +0.3
3,935,134 - +1.8
3,935,200 + +0.8
3,935,200 + -0.7
3,935,201 - -0.4
3,935,362 + PfGW456L13_3495 0.19 -0.4
3,935,362 + PfGW456L13_3495 0.19 -0.1
3,935,362 + PfGW456L13_3495 0.19 -0.1
3,935,362 + PfGW456L13_3495 0.19 -1.1
3,935,363 - PfGW456L13_3495 0.19 +0.5
3,935,414 + PfGW456L13_3495 0.32 +0.1
3,935,459 - PfGW456L13_3495 0.44 +1.0
3,935,546 - PfGW456L13_3495 0.67 -0.8
3,935,568 + PfGW456L13_3495 0.72 +0.7
3,935,569 - PfGW456L13_3495 0.73 -0.2
3,935,662 + -0.5
3,935,984 + PfGW456L13_3496 0.48 -0.2
3,935,984 + PfGW456L13_3496 0.48 +0.6
3,935,985 - PfGW456L13_3496 0.48 +1.8
3,935,985 - PfGW456L13_3496 0.48 +0.4
3,935,985 - PfGW456L13_3496 0.48 -0.9
3,936,090 - PfGW456L13_3496 0.66 +0.9
3,936,182 + PfGW456L13_3496 0.82 +0.0
3,936,327 + +1.0
3,936,328 - -1.0
3,936,328 - -1.2
3,936,337 + +1.7
3,936,515 - -2.0
3,936,522 + +0.9
3,936,643 + -0.0
3,936,644 - PfGW456L13_3497 0.18 -0.2
3,936,644 - PfGW456L13_3497 0.18 +1.4
3,936,644 - PfGW456L13_3497 0.18 +0.9
3,936,828 - PfGW456L13_3497 0.37 +0.3
3,936,979 + PfGW456L13_3497 0.52 +2.9

Or see this region's nucleotide sequence