Experiment: Fusidic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3495 and PfGW456L13_3496 are separated by 28 nucleotides PfGW456L13_3496 and PfGW456L13_3497 are separated by 182 nucleotides
PfGW456L13_3495 - FIG01111987: hypothetical protein, at 3,935,290 to 3,935,673
_3495
PfGW456L13_3496 - Transcriptional regulator, TetR family, at 3,935,702 to 3,936,289
_3496
PfGW456L13_3497 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 3,936,472 to 3,937,437
_3497
Position (kb)
3935
3936
3937 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3934.983 kb on - strand at 3935.058 kb on + strand at 3935.059 kb on - strand at 3935.060 kb on + strand at 3935.060 kb on + strand at 3935.061 kb on - strand at 3935.061 kb on - strand at 3935.085 kb on + strand at 3935.133 kb on + strand at 3935.133 kb on + strand at 3935.133 kb on + strand at 3935.134 kb on - strand at 3935.200 kb on + strand at 3935.200 kb on + strand at 3935.201 kb on - strand at 3935.362 kb on + strand, within PfGW456L13_3495 at 3935.362 kb on + strand, within PfGW456L13_3495 at 3935.362 kb on + strand, within PfGW456L13_3495 at 3935.362 kb on + strand, within PfGW456L13_3495 at 3935.363 kb on - strand, within PfGW456L13_3495 at 3935.414 kb on + strand, within PfGW456L13_3495 at 3935.459 kb on - strand, within PfGW456L13_3495 at 3935.546 kb on - strand, within PfGW456L13_3495 at 3935.568 kb on + strand, within PfGW456L13_3495 at 3935.569 kb on - strand, within PfGW456L13_3495 at 3935.662 kb on + strand at 3935.984 kb on + strand, within PfGW456L13_3496 at 3935.984 kb on + strand, within PfGW456L13_3496 at 3935.985 kb on - strand, within PfGW456L13_3496 at 3935.985 kb on - strand, within PfGW456L13_3496 at 3935.985 kb on - strand, within PfGW456L13_3496 at 3936.090 kb on - strand, within PfGW456L13_3496 at 3936.182 kb on + strand, within PfGW456L13_3496 at 3936.327 kb on + strand at 3936.328 kb on - strand at 3936.328 kb on - strand at 3936.337 kb on + strand at 3936.515 kb on - strand at 3936.522 kb on + strand at 3936.643 kb on + strand at 3936.644 kb on - strand, within PfGW456L13_3497 at 3936.644 kb on - strand, within PfGW456L13_3497 at 3936.644 kb on - strand, within PfGW456L13_3497 at 3936.828 kb on - strand, within PfGW456L13_3497 at 3936.979 kb on + strand, within PfGW456L13_3497
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml remove 3,934,983 - +0.0 3,935,058 + +0.8 3,935,059 - +0.0 3,935,060 + -1.4 3,935,060 + +0.8 3,935,061 - -0.3 3,935,061 - -2.2 3,935,085 + -0.2 3,935,133 + -1.2 3,935,133 + +0.1 3,935,133 + +0.3 3,935,134 - +1.8 3,935,200 + +0.8 3,935,200 + -0.7 3,935,201 - -0.4 3,935,362 + PfGW456L13_3495 0.19 -0.4 3,935,362 + PfGW456L13_3495 0.19 -0.1 3,935,362 + PfGW456L13_3495 0.19 -0.1 3,935,362 + PfGW456L13_3495 0.19 -1.1 3,935,363 - PfGW456L13_3495 0.19 +0.5 3,935,414 + PfGW456L13_3495 0.32 +0.1 3,935,459 - PfGW456L13_3495 0.44 +1.0 3,935,546 - PfGW456L13_3495 0.67 -0.8 3,935,568 + PfGW456L13_3495 0.72 +0.7 3,935,569 - PfGW456L13_3495 0.73 -0.2 3,935,662 + -0.5 3,935,984 + PfGW456L13_3496 0.48 -0.2 3,935,984 + PfGW456L13_3496 0.48 +0.6 3,935,985 - PfGW456L13_3496 0.48 +1.8 3,935,985 - PfGW456L13_3496 0.48 +0.4 3,935,985 - PfGW456L13_3496 0.48 -0.9 3,936,090 - PfGW456L13_3496 0.66 +0.9 3,936,182 + PfGW456L13_3496 0.82 +0.0 3,936,327 + +1.0 3,936,328 - -1.0 3,936,328 - -1.2 3,936,337 + +1.7 3,936,515 - -2.0 3,936,522 + +0.9 3,936,643 + -0.0 3,936,644 - PfGW456L13_3497 0.18 -0.2 3,936,644 - PfGW456L13_3497 0.18 +1.4 3,936,644 - PfGW456L13_3497 0.18 +0.9 3,936,828 - PfGW456L13_3497 0.37 +0.3 3,936,979 + PfGW456L13_3497 0.52 +2.9
Or see this region's nucleotide sequence