Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2515

Experiment: Fusidic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2515 and PfGW456L13_2516 are separated by 79 nucleotides PfGW456L13_2515 - 5-nucleotidase SurE (EC 3.1.3.5), at 2,780,073 to 2,781,050 _2515 PfGW456L13_2516 - FIG002188: hypothetical protein, at 2,781,130 to 2,782,509 _2516 Position (kb) 2780 2781 2782Strain fitness (log2 ratio) -1 0 1at 2780.075 kb on - strandat 2780.094 kb on + strandat 2780.095 kb on - strandat 2780.095 kb on - strandat 2780.095 kb on - strandat 2780.771 kb on - strand, within PfGW456L13_2515at 2780.839 kb on - strand, within PfGW456L13_2515at 2780.839 kb on - strand, within PfGW456L13_2515at 2780.926 kb on + strand, within PfGW456L13_2515at 2781.081 kb on + strandat 2781.239 kb on + strandat 2781.263 kb on + strandat 2781.263 kb on + strandat 2781.264 kb on - strandat 2781.299 kb on + strand, within PfGW456L13_2516at 2781.305 kb on + strand, within PfGW456L13_2516at 2781.305 kb on + strand, within PfGW456L13_2516at 2781.306 kb on - strand, within PfGW456L13_2516at 2781.306 kb on - strand, within PfGW456L13_2516at 2781.306 kb on - strand, within PfGW456L13_2516at 2781.353 kb on + strand, within PfGW456L13_2516at 2781.353 kb on + strand, within PfGW456L13_2516at 2781.354 kb on - strand, within PfGW456L13_2516at 2781.354 kb on - strand, within PfGW456L13_2516at 2781.414 kb on - strand, within PfGW456L13_2516at 2781.415 kb on + strand, within PfGW456L13_2516at 2781.415 kb on + strand, within PfGW456L13_2516at 2781.415 kb on + strand, within PfGW456L13_2516at 2781.415 kb on + strand, within PfGW456L13_2516at 2781.416 kb on - strand, within PfGW456L13_2516at 2781.416 kb on - strand, within PfGW456L13_2516at 2781.482 kb on + strand, within PfGW456L13_2516at 2781.482 kb on + strand, within PfGW456L13_2516at 2781.483 kb on - strand, within PfGW456L13_2516at 2781.551 kb on + strand, within PfGW456L13_2516at 2781.552 kb on - strand, within PfGW456L13_2516at 2781.552 kb on - strand, within PfGW456L13_2516at 2781.552 kb on - strand, within PfGW456L13_2516at 2781.569 kb on + strand, within PfGW456L13_2516at 2781.569 kb on + strand, within PfGW456L13_2516at 2781.641 kb on + strand, within PfGW456L13_2516at 2781.723 kb on - strand, within PfGW456L13_2516at 2781.723 kb on - strand, within PfGW456L13_2516at 2781.723 kb on - strand, within PfGW456L13_2516at 2781.832 kb on + strand, within PfGW456L13_2516at 2781.833 kb on - strand, within PfGW456L13_2516at 2781.890 kb on + strand, within PfGW456L13_2516at 2781.890 kb on + strand, within PfGW456L13_2516at 2781.890 kb on + strand, within PfGW456L13_2516at 2781.891 kb on - strand, within PfGW456L13_2516at 2781.945 kb on - strand, within PfGW456L13_2516at 2781.945 kb on - strandat 2781.981 kb on + strand, within PfGW456L13_2516at 2781.981 kb on + strand, within PfGW456L13_2516at 2781.981 kb on + strand, within PfGW456L13_2516at 2781.982 kb on - strand, within PfGW456L13_2516at 2781.982 kb on - strand, within PfGW456L13_2516at 2781.982 kb on - strand, within PfGW456L13_2516

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml
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2,780,075 - -0.1
2,780,094 + -0.1
2,780,095 - +0.8
2,780,095 - -0.4
2,780,095 - -0.0
2,780,771 - PfGW456L13_2515 0.71 -0.5
2,780,839 - PfGW456L13_2515 0.78 -1.1
2,780,839 - PfGW456L13_2515 0.78 +0.2
2,780,926 + PfGW456L13_2515 0.87 -1.6
2,781,081 + -0.2
2,781,239 + +0.0
2,781,263 + -0.8
2,781,263 + -0.4
2,781,264 - +0.2
2,781,299 + PfGW456L13_2516 0.12 +0.2
2,781,305 + PfGW456L13_2516 0.13 +0.9
2,781,305 + PfGW456L13_2516 0.13 -0.2
2,781,306 - PfGW456L13_2516 0.13 +1.1
2,781,306 - PfGW456L13_2516 0.13 -0.1
2,781,306 - PfGW456L13_2516 0.13 +0.1
2,781,353 + PfGW456L13_2516 0.16 -1.6
2,781,353 + PfGW456L13_2516 0.16 +0.3
2,781,354 - PfGW456L13_2516 0.16 -1.6
2,781,354 - PfGW456L13_2516 0.16 +0.7
2,781,414 - PfGW456L13_2516 0.21 -0.1
2,781,415 + PfGW456L13_2516 0.21 -0.1
2,781,415 + PfGW456L13_2516 0.21 -0.6
2,781,415 + PfGW456L13_2516 0.21 +0.6
2,781,415 + PfGW456L13_2516 0.21 +0.6
2,781,416 - PfGW456L13_2516 0.21 -0.9
2,781,416 - PfGW456L13_2516 0.21 -0.9
2,781,482 + PfGW456L13_2516 0.26 -0.4
2,781,482 + PfGW456L13_2516 0.26 -0.2
2,781,483 - PfGW456L13_2516 0.26 -0.7
2,781,551 + PfGW456L13_2516 0.31 -0.2
2,781,552 - PfGW456L13_2516 0.31 -0.5
2,781,552 - PfGW456L13_2516 0.31 -1.4
2,781,552 - PfGW456L13_2516 0.31 -0.9
2,781,569 + PfGW456L13_2516 0.32 +0.3
2,781,569 + PfGW456L13_2516 0.32 -1.0
2,781,641 + PfGW456L13_2516 0.37 +0.5
2,781,723 - PfGW456L13_2516 0.43 -0.0
2,781,723 - PfGW456L13_2516 0.43 +0.2
2,781,723 - PfGW456L13_2516 0.43 -0.1
2,781,832 + PfGW456L13_2516 0.51 +0.2
2,781,833 - PfGW456L13_2516 0.51 +1.2
2,781,890 + PfGW456L13_2516 0.55 +0.4
2,781,890 + PfGW456L13_2516 0.55 +1.3
2,781,890 + PfGW456L13_2516 0.55 +0.1
2,781,891 - PfGW456L13_2516 0.55 +1.2
2,781,945 - PfGW456L13_2516 0.59 +1.1
2,781,945 - +0.8
2,781,981 + PfGW456L13_2516 0.62 -0.1
2,781,981 + PfGW456L13_2516 0.62 +1.2
2,781,981 + PfGW456L13_2516 0.62 -0.1
2,781,982 - PfGW456L13_2516 0.62 -0.3
2,781,982 - PfGW456L13_2516 0.62 -0.7
2,781,982 - PfGW456L13_2516 0.62 -0.5

Or see this region's nucleotide sequence