Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2106

Experiment: Fusidic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2104 and PfGW456L13_2105 are separated by 16 nucleotidesPfGW456L13_2105 and PfGW456L13_2106 are separated by 196 nucleotidesPfGW456L13_2106 and PfGW456L13_2107 are separated by 145 nucleotides PfGW456L13_2104 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 2,309,773 to 2,310,657 _2104 PfGW456L13_2105 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,310,674 to 2,311,414 _2105 PfGW456L13_2106 - Acyl carrier protein, at 2,311,611 to 2,311,847 _2106 PfGW456L13_2107 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 2,311,993 to 2,313,201 _2107 Position (kb) 2311 2312Strain fitness (log2 ratio) -2 -1 0 1 2at 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.472 kb on + strandat 2311.472 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.491 kb on + strandat 2311.491 kb on + strandat 2311.553 kb on + strandat 2311.553 kb on + strandat 2311.555 kb on + strandat 2311.561 kb on + strandat 2311.561 kb on + strandat 2311.845 kb on + strandat 2311.848 kb on + strandat 2311.915 kb on + strandat 2311.976 kb on + strandat 2311.976 kb on + strandat 2311.992 kb on + strandat 2311.992 kb on + strandat 2311.993 kb on - strandat 2312.092 kb on + strandat 2312.140 kb on + strand, within PfGW456L13_2107at 2312.140 kb on + strand, within PfGW456L13_2107at 2312.141 kb on - strand, within PfGW456L13_2107at 2312.379 kb on + strand, within PfGW456L13_2107at 2312.428 kb on + strand, within PfGW456L13_2107at 2312.428 kb on + strand, within PfGW456L13_2107at 2312.429 kb on - strand, within PfGW456L13_2107at 2312.448 kb on + strand, within PfGW456L13_2107at 2312.449 kb on - strand, within PfGW456L13_2107at 2312.494 kb on + strand, within PfGW456L13_2107at 2312.494 kb on + strand, within PfGW456L13_2107at 2312.648 kb on + strand, within PfGW456L13_2107at 2312.648 kb on + strand, within PfGW456L13_2107at 2312.676 kb on - strand, within PfGW456L13_2107at 2312.719 kb on + strand, within PfGW456L13_2107at 2312.719 kb on + strand, within PfGW456L13_2107

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml
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2,311,406 + -0.1
2,311,406 + -0.3
2,311,406 + -0.3
2,311,406 + +0.2
2,311,406 + -0.8
2,311,406 + -0.8
2,311,406 + +0.9
2,311,406 + +1.1
2,311,406 + +0.4
2,311,406 + -0.1
2,311,406 + -1.1
2,311,406 + -0.4
2,311,406 + -0.3
2,311,412 + +0.1
2,311,412 + +0.2
2,311,412 + -0.6
2,311,412 + +1.2
2,311,412 + +0.0
2,311,412 + -0.4
2,311,449 + +2.0
2,311,449 + +0.1
2,311,449 + +1.3
2,311,449 + +0.1
2,311,449 + +0.8
2,311,449 + +1.0
2,311,472 + -1.1
2,311,472 + -0.6
2,311,485 + -0.9
2,311,485 + -0.2
2,311,485 + -0.4
2,311,485 + +0.2
2,311,491 + -1.4
2,311,491 + -0.7
2,311,553 + -1.2
2,311,553 + -0.9
2,311,555 + -0.3
2,311,561 + -1.2
2,311,561 + -1.6
2,311,845 + +1.4
2,311,848 + -0.5
2,311,915 + -0.6
2,311,976 + -0.6
2,311,976 + -0.6
2,311,992 + -0.1
2,311,992 + -0.9
2,311,993 - +0.9
2,312,092 + +0.6
2,312,140 + PfGW456L13_2107 0.12 -1.1
2,312,140 + PfGW456L13_2107 0.12 +0.4
2,312,141 - PfGW456L13_2107 0.12 -1.4
2,312,379 + PfGW456L13_2107 0.32 -2.4
2,312,428 + PfGW456L13_2107 0.36 +0.6
2,312,428 + PfGW456L13_2107 0.36 -0.4
2,312,429 - PfGW456L13_2107 0.36 -1.9
2,312,448 + PfGW456L13_2107 0.38 -0.3
2,312,449 - PfGW456L13_2107 0.38 +0.9
2,312,494 + PfGW456L13_2107 0.41 -1.1
2,312,494 + PfGW456L13_2107 0.41 +0.9
2,312,648 + PfGW456L13_2107 0.54 -1.1
2,312,648 + PfGW456L13_2107 0.54 -0.9
2,312,676 - PfGW456L13_2107 0.56 -0.1
2,312,719 + PfGW456L13_2107 0.60 +0.4
2,312,719 + PfGW456L13_2107 0.60 -0.6

Or see this region's nucleotide sequence