Experiment: Fusidic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1578 and PfGW456L13_1579 are separated by 1 nucleotides PfGW456L13_1579 and PfGW456L13_1580 are separated by 4 nucleotides PfGW456L13_1580 and PfGW456L13_1581 are separated by 313 nucleotides
PfGW456L13_1578 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 1,742,313 to 1,743,164
_1578
PfGW456L13_1579 - Outer membrane lipoprotein LolB precursor, at 1,743,166 to 1,743,783
_1579
PfGW456L13_1580 - FIG140336: TPR domain protein, at 1,743,788 to 1,745,494
_1580
PfGW456L13_1581 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 1,745,808 to 1,747,037
_1581
Position (kb)
1743
1744
1745
1746 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1743.784 kb on - strand at 1743.784 kb on - strand at 1743.784 kb on - strand at 1743.790 kb on - strand at 1744.006 kb on - strand, within PfGW456L13_1580 at 1744.120 kb on - strand, within PfGW456L13_1580 at 1744.172 kb on - strand, within PfGW456L13_1580 at 1744.172 kb on - strand, within PfGW456L13_1580 at 1744.234 kb on - strand, within PfGW456L13_1580 at 1744.354 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.642 kb on - strand, within PfGW456L13_1580 at 1744.738 kb on - strand, within PfGW456L13_1580 at 1745.093 kb on - strand, within PfGW456L13_1580 at 1745.095 kb on - strand, within PfGW456L13_1580 at 1745.095 kb on - strand, within PfGW456L13_1580 at 1745.095 kb on - strand, within PfGW456L13_1580 at 1745.095 kb on - strand, within PfGW456L13_1580 at 1745.095 kb on - strand, within PfGW456L13_1580 at 1745.113 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.293 kb on - strand, within PfGW456L13_1580 at 1745.383 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.507 kb on - strand at 1745.513 kb on - strand at 1745.513 kb on - strand at 1745.513 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.515 kb on - strand at 1745.573 kb on + strand at 1745.574 kb on - strand at 1745.574 kb on - strand at 1745.590 kb on + strand at 1745.591 kb on - strand at 1745.591 kb on - strand at 1745.628 kb on + strand at 1745.673 kb on + strand at 1745.673 kb on + strand at 1745.677 kb on + strand at 1745.677 kb on + strand at 1745.678 kb on - strand at 1745.678 kb on - strand at 1745.684 kb on + strand at 1745.684 kb on + strand at 1745.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml remove 1,743,784 - -1.1 1,743,784 - +0.6 1,743,784 - +0.9 1,743,790 - -1.1 1,744,006 - PfGW456L13_1580 0.13 -3.5 1,744,120 - PfGW456L13_1580 0.19 -2.3 1,744,172 - PfGW456L13_1580 0.22 -1.4 1,744,172 - PfGW456L13_1580 0.22 -2.5 1,744,234 - PfGW456L13_1580 0.26 -3.7 1,744,354 - PfGW456L13_1580 0.33 -3.0 1,744,388 - PfGW456L13_1580 0.35 -1.3 1,744,388 - PfGW456L13_1580 0.35 -0.8 1,744,388 - PfGW456L13_1580 0.35 -2.3 1,744,388 - PfGW456L13_1580 0.35 -2.0 1,744,388 - PfGW456L13_1580 0.35 -2.3 1,744,388 - PfGW456L13_1580 0.35 -1.4 1,744,388 - PfGW456L13_1580 0.35 -3.0 1,744,388 - PfGW456L13_1580 0.35 -2.4 1,744,388 - PfGW456L13_1580 0.35 -1.0 1,744,388 - PfGW456L13_1580 0.35 -3.1 1,744,642 - PfGW456L13_1580 0.50 -1.7 1,744,738 - PfGW456L13_1580 0.56 -0.4 1,745,093 - PfGW456L13_1580 0.76 -2.3 1,745,095 - PfGW456L13_1580 0.77 -2.1 1,745,095 - PfGW456L13_1580 0.77 -1.6 1,745,095 - PfGW456L13_1580 0.77 -2.4 1,745,095 - PfGW456L13_1580 0.77 -0.8 1,745,095 - PfGW456L13_1580 0.77 -3.6 1,745,113 - PfGW456L13_1580 0.78 -2.8 1,745,293 - PfGW456L13_1580 0.88 -2.4 1,745,293 - PfGW456L13_1580 0.88 -2.9 1,745,293 - PfGW456L13_1580 0.88 -2.3 1,745,293 - PfGW456L13_1580 0.88 -1.4 1,745,293 - PfGW456L13_1580 0.88 -2.3 1,745,293 - PfGW456L13_1580 0.88 -0.6 1,745,293 - PfGW456L13_1580 0.88 -2.8 1,745,293 - PfGW456L13_1580 0.88 -0.0 1,745,293 - PfGW456L13_1580 0.88 -2.0 1,745,293 - PfGW456L13_1580 0.88 -1.8 1,745,293 - PfGW456L13_1580 0.88 -2.9 1,745,293 - PfGW456L13_1580 0.88 -1.6 1,745,293 - PfGW456L13_1580 0.88 -0.8 1,745,293 - PfGW456L13_1580 0.88 -2.4 1,745,293 - PfGW456L13_1580 0.88 -1.1 1,745,293 - PfGW456L13_1580 0.88 -1.4 1,745,383 - -1.4 1,745,507 - -1.8 1,745,507 - -2.6 1,745,507 - +0.5 1,745,507 - -1.4 1,745,507 - -0.1 1,745,507 - +1.2 1,745,507 - +0.9 1,745,507 - -1.4 1,745,507 - -0.6 1,745,507 - -0.5 1,745,507 - -0.1 1,745,507 - -0.1 1,745,507 - -0.0 1,745,507 - +0.1 1,745,507 - -0.8 1,745,507 - +0.4 1,745,513 - -1.5 1,745,513 - +0.1 1,745,513 - -0.1 1,745,515 - +0.6 1,745,515 - -2.2 1,745,515 - -0.3 1,745,515 - +0.1 1,745,515 - -0.1 1,745,515 - +0.3 1,745,515 - +0.0 1,745,515 - +0.2 1,745,515 - +0.6 1,745,515 - -0.1 1,745,515 - +1.1 1,745,515 - +1.8 1,745,515 - +0.8 1,745,515 - +0.1 1,745,515 - -0.2 1,745,515 - +0.2 1,745,573 + +0.0 1,745,574 - +1.0 1,745,574 - -0.3 1,745,590 + -0.7 1,745,591 - +0.2 1,745,591 - +1.0 1,745,628 + -0.9 1,745,673 + +0.6 1,745,673 + -0.3 1,745,677 + -0.1 1,745,677 + -2.0 1,745,678 - +0.9 1,745,678 - +1.3 1,745,684 + -0.2 1,745,684 + -0.4 1,745,707 + +1.6
Or see this region's nucleotide sequence