Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1580

Experiment: Fusidic 0.08 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1578 and PfGW456L13_1579 are separated by 1 nucleotidesPfGW456L13_1579 and PfGW456L13_1580 are separated by 4 nucleotidesPfGW456L13_1580 and PfGW456L13_1581 are separated by 313 nucleotides PfGW456L13_1578 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 1,742,313 to 1,743,164 _1578 PfGW456L13_1579 - Outer membrane lipoprotein LolB precursor, at 1,743,166 to 1,743,783 _1579 PfGW456L13_1580 - FIG140336: TPR domain protein, at 1,743,788 to 1,745,494 _1580 PfGW456L13_1581 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 1,745,808 to 1,747,037 _1581 Position (kb) 1743 1744 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1743.784 kb on - strandat 1743.784 kb on - strandat 1743.784 kb on - strandat 1743.790 kb on - strandat 1744.006 kb on - strand, within PfGW456L13_1580at 1744.120 kb on - strand, within PfGW456L13_1580at 1744.172 kb on - strand, within PfGW456L13_1580at 1744.172 kb on - strand, within PfGW456L13_1580at 1744.234 kb on - strand, within PfGW456L13_1580at 1744.354 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.388 kb on - strand, within PfGW456L13_1580at 1744.642 kb on - strand, within PfGW456L13_1580at 1744.738 kb on - strand, within PfGW456L13_1580at 1745.093 kb on - strand, within PfGW456L13_1580at 1745.095 kb on - strand, within PfGW456L13_1580at 1745.095 kb on - strand, within PfGW456L13_1580at 1745.095 kb on - strand, within PfGW456L13_1580at 1745.095 kb on - strand, within PfGW456L13_1580at 1745.095 kb on - strand, within PfGW456L13_1580at 1745.113 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.293 kb on - strand, within PfGW456L13_1580at 1745.383 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.507 kb on - strandat 1745.513 kb on - strandat 1745.513 kb on - strandat 1745.513 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.515 kb on - strandat 1745.573 kb on + strandat 1745.574 kb on - strandat 1745.574 kb on - strandat 1745.590 kb on + strandat 1745.591 kb on - strandat 1745.591 kb on - strandat 1745.628 kb on + strandat 1745.673 kb on + strandat 1745.673 kb on + strandat 1745.677 kb on + strandat 1745.677 kb on + strandat 1745.678 kb on - strandat 1745.678 kb on - strandat 1745.684 kb on + strandat 1745.684 kb on + strandat 1745.707 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.08 mg/ml
remove
1,743,784 - -1.1
1,743,784 - +0.6
1,743,784 - +0.9
1,743,790 - -1.1
1,744,006 - PfGW456L13_1580 0.13 -3.5
1,744,120 - PfGW456L13_1580 0.19 -2.3
1,744,172 - PfGW456L13_1580 0.22 -1.4
1,744,172 - PfGW456L13_1580 0.22 -2.5
1,744,234 - PfGW456L13_1580 0.26 -3.7
1,744,354 - PfGW456L13_1580 0.33 -3.0
1,744,388 - PfGW456L13_1580 0.35 -1.3
1,744,388 - PfGW456L13_1580 0.35 -0.8
1,744,388 - PfGW456L13_1580 0.35 -2.3
1,744,388 - PfGW456L13_1580 0.35 -2.0
1,744,388 - PfGW456L13_1580 0.35 -2.3
1,744,388 - PfGW456L13_1580 0.35 -1.4
1,744,388 - PfGW456L13_1580 0.35 -3.0
1,744,388 - PfGW456L13_1580 0.35 -2.4
1,744,388 - PfGW456L13_1580 0.35 -1.0
1,744,388 - PfGW456L13_1580 0.35 -3.1
1,744,642 - PfGW456L13_1580 0.50 -1.7
1,744,738 - PfGW456L13_1580 0.56 -0.4
1,745,093 - PfGW456L13_1580 0.76 -2.3
1,745,095 - PfGW456L13_1580 0.77 -2.1
1,745,095 - PfGW456L13_1580 0.77 -1.6
1,745,095 - PfGW456L13_1580 0.77 -2.4
1,745,095 - PfGW456L13_1580 0.77 -0.8
1,745,095 - PfGW456L13_1580 0.77 -3.6
1,745,113 - PfGW456L13_1580 0.78 -2.8
1,745,293 - PfGW456L13_1580 0.88 -2.4
1,745,293 - PfGW456L13_1580 0.88 -2.9
1,745,293 - PfGW456L13_1580 0.88 -2.3
1,745,293 - PfGW456L13_1580 0.88 -1.4
1,745,293 - PfGW456L13_1580 0.88 -2.3
1,745,293 - PfGW456L13_1580 0.88 -0.6
1,745,293 - PfGW456L13_1580 0.88 -2.8
1,745,293 - PfGW456L13_1580 0.88 -0.0
1,745,293 - PfGW456L13_1580 0.88 -2.0
1,745,293 - PfGW456L13_1580 0.88 -1.8
1,745,293 - PfGW456L13_1580 0.88 -2.9
1,745,293 - PfGW456L13_1580 0.88 -1.6
1,745,293 - PfGW456L13_1580 0.88 -0.8
1,745,293 - PfGW456L13_1580 0.88 -2.4
1,745,293 - PfGW456L13_1580 0.88 -1.1
1,745,293 - PfGW456L13_1580 0.88 -1.4
1,745,383 - -1.4
1,745,507 - -1.8
1,745,507 - -2.6
1,745,507 - +0.5
1,745,507 - -1.4
1,745,507 - -0.1
1,745,507 - +1.2
1,745,507 - +0.9
1,745,507 - -1.4
1,745,507 - -0.6
1,745,507 - -0.5
1,745,507 - -0.1
1,745,507 - -0.1
1,745,507 - -0.0
1,745,507 - +0.1
1,745,507 - -0.8
1,745,507 - +0.4
1,745,513 - -1.5
1,745,513 - +0.1
1,745,513 - -0.1
1,745,515 - +0.6
1,745,515 - -2.2
1,745,515 - -0.3
1,745,515 - +0.1
1,745,515 - -0.1
1,745,515 - +0.3
1,745,515 - +0.0
1,745,515 - +0.2
1,745,515 - +0.6
1,745,515 - -0.1
1,745,515 - +1.1
1,745,515 - +1.8
1,745,515 - +0.8
1,745,515 - +0.1
1,745,515 - -0.2
1,745,515 - +0.2
1,745,573 + +0.0
1,745,574 - +1.0
1,745,574 - -0.3
1,745,590 + -0.7
1,745,591 - +0.2
1,745,591 - +1.0
1,745,628 + -0.9
1,745,673 + +0.6
1,745,673 + -0.3
1,745,677 + -0.1
1,745,677 + -2.0
1,745,678 - +0.9
1,745,678 - +1.3
1,745,684 + -0.2
1,745,684 + -0.4
1,745,707 + +1.6

Or see this region's nucleotide sequence