Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF998

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF996 and GFF997 are separated by 74 nucleotidesGFF997 and GFF998 are separated by 73 nucleotidesGFF998 and GFF999 are separated by 68 nucleotidesGFF999 and GFF1000 are separated by 26 nucleotides GFF996 - FIG074102: hypothetical protein, at 179,385 to 179,549 GFF996 GFF997 - Putative inner membrane protein, at 179,624 to 180,325 GFF997 GFF998 - FIG00638399: hypothetical protein, at 180,399 to 180,731 GFF998 GFF999 - hypothetical protein, at 180,800 to 180,931 GFF999 GFF1000 - Type I restriction-modification system, specificity subunit S (EC 3.1.21.3), at 180,958 to 182,316 GFF1000 Position (kb) 180 181Strain fitness (log2 ratio) -1 0 1at 180.018 kb on - strand, within GFF997at 180.299 kb on - strandat 180.359 kb on + strandat 180.534 kb on - strand, within GFF998at 180.631 kb on + strand, within GFF998at 180.653 kb on - strand, within GFF998at 180.714 kb on - strandat 180.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
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180,018 - GFF997 0.56 +0.1
180,299 - +0.3
180,359 + +0.2
180,534 - GFF998 0.41 -0.6
180,631 + GFF998 0.70 -0.4
180,653 - GFF998 0.76 -0.9
180,714 - -0.0
180,726 - +0.2

Or see this region's nucleotide sequence