Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF691

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF689 and GFF690 are separated by 132 nucleotidesGFF690 and GFF691 overlap by 39 nucleotidesGFF691 and GFF692 are separated by 115 nucleotides GFF689 - Endonuclease/Exonuclease/phosphatase family protein, at 45,414 to 46,172 GFF689 GFF690 - Putative inner membrane protein, at 46,305 to 46,715 GFF690 GFF691 - ABC transport system, permease component YbhR, at 46,677 to 47,783 GFF691 GFF692 - ABC transport system, permease component YbhS, at 47,899 to 49,029 GFF692 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.712 kb on - strand, within GFF689at 45.712 kb on - strand, within GFF689at 45.751 kb on - strand, within GFF689at 45.802 kb on + strand, within GFF689at 45.907 kb on + strand, within GFF689at 46.208 kb on - strandat 46.208 kb on - strandat 46.436 kb on - strand, within GFF690at 46.706 kb on - strandat 46.805 kb on + strand, within GFF691at 46.911 kb on - strand, within GFF691at 46.911 kb on - strand, within GFF691at 46.993 kb on + strand, within GFF691at 47.290 kb on + strand, within GFF691at 47.357 kb on - strand, within GFF691at 47.550 kb on + strand, within GFF691at 47.550 kb on + strand, within GFF691at 47.551 kb on - strand, within GFF691at 47.616 kb on - strand, within GFF691at 47.626 kb on + strand, within GFF691at 47.627 kb on - strand, within GFF691at 47.645 kb on + strand, within GFF691at 47.733 kb on + strandat 47.769 kb on + strandat 47.808 kb on - strandat 47.891 kb on - strandat 47.896 kb on + strandat 47.897 kb on - strandat 47.983 kb on + strandat 48.038 kb on + strand, within GFF692at 48.054 kb on + strand, within GFF692at 48.055 kb on - strand, within GFF692at 48.056 kb on + strand, within GFF692at 48.056 kb on + strand, within GFF692at 48.084 kb on + strand, within GFF692at 48.297 kb on + strand, within GFF692at 48.340 kb on - strand, within GFF692at 48.462 kb on + strand, within GFF692at 48.611 kb on + strand, within GFF692at 48.654 kb on + strand, within GFF692

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
remove
45,712 - GFF689 0.39 -0.1
45,712 - GFF689 0.39 -0.6
45,751 - GFF689 0.44 +0.2
45,802 + GFF689 0.51 -0.0
45,907 + GFF689 0.65 -0.8
46,208 - +0.2
46,208 - +0.1
46,436 - GFF690 0.32 +0.0
46,706 - +0.1
46,805 + GFF691 0.12 -1.9
46,911 - GFF691 0.21 -1.1
46,911 - GFF691 0.21 -0.5
46,993 + GFF691 0.29 +2.2
47,290 + GFF691 0.55 +0.0
47,357 - GFF691 0.61 -0.8
47,550 + GFF691 0.79 -0.8
47,550 + GFF691 0.79 -1.1
47,551 - GFF691 0.79 +0.0
47,616 - GFF691 0.85 -0.2
47,626 + GFF691 0.86 -0.4
47,627 - GFF691 0.86 -0.1
47,645 + GFF691 0.87 -0.7
47,733 + -0.3
47,769 + -0.1
47,808 - -1.6
47,891 - +0.2
47,896 + +0.7
47,897 - +0.2
47,983 + +2.0
48,038 + GFF692 0.12 +0.1
48,054 + GFF692 0.14 -0.5
48,055 - GFF692 0.14 +0.5
48,056 + GFF692 0.14 +0.2
48,056 + GFF692 0.14 +0.4
48,084 + GFF692 0.16 -0.3
48,297 + GFF692 0.35 -0.5
48,340 - GFF692 0.39 -0.4
48,462 + GFF692 0.50 -0.5
48,611 + GFF692 0.63 -0.7
48,654 + GFF692 0.67 -0.5

Or see this region's nucleotide sequence