Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4695

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4694 and GFF4695 are separated by 477 nucleotidesGFF4695 and GFF4696 are separated by 253 nucleotidesGFF4696 and GFF4697 overlap by 4 nucleotides GFF4694 - C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS, at 5,780 to 6,277 GFF4694 GFF4695 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 6,755 to 7,834 GFF4695 GFF4696 - PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69), at 8,088 to 8,651 GFF4696 GFF4697 - PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69), at 8,648 to 9,619 GFF4697 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.823 kb on + strandat 5.972 kb on - strand, within GFF4694at 6.032 kb on + strand, within GFF4694at 6.107 kb on - strand, within GFF4694at 6.107 kb on - strand, within GFF4694at 6.110 kb on - strand, within GFF4694at 6.110 kb on - strand, within GFF4694at 6.110 kb on - strand, within GFF4694at 6.110 kb on - strand, within GFF4694at 6.112 kb on - strand, within GFF4694at 6.112 kb on - strand, within GFF4694at 6.356 kb on - strandat 6.393 kb on - strandat 6.410 kb on + strandat 6.527 kb on + strandat 6.555 kb on - strandat 6.555 kb on - strandat 6.654 kb on + strandat 6.655 kb on - strandat 6.655 kb on - strandat 6.719 kb on - strandat 6.843 kb on + strandat 6.941 kb on + strand, within GFF4695at 7.066 kb on - strand, within GFF4695at 7.162 kb on + strand, within GFF4695at 7.163 kb on - strand, within GFF4695at 7.163 kb on - strand, within GFF4695at 7.292 kb on - strand, within GFF4695at 7.339 kb on + strand, within GFF4695at 7.339 kb on + strand, within GFF4695at 7.340 kb on - strand, within GFF4695at 7.340 kb on - strand, within GFF4695at 7.340 kb on - strand, within GFF4695at 7.399 kb on - strand, within GFF4695at 7.401 kb on - strand, within GFF4695at 7.401 kb on - strand, within GFF4695at 7.566 kb on + strand, within GFF4695at 7.567 kb on - strand, within GFF4695at 7.567 kb on - strand, within GFF4695at 7.579 kb on + strand, within GFF4695at 7.627 kb on + strand, within GFF4695at 7.627 kb on + strand, within GFF4695at 7.640 kb on - strand, within GFF4695at 7.699 kb on + strand, within GFF4695at 7.876 kb on - strandat 7.915 kb on + strandat 8.102 kb on + strandat 8.174 kb on + strand, within GFF4696at 8.289 kb on + strand, within GFF4696at 8.290 kb on - strand, within GFF4696at 8.299 kb on + strand, within GFF4696at 8.383 kb on - strand, within GFF4696at 8.386 kb on - strand, within GFF4696at 8.400 kb on + strand, within GFF4696at 8.435 kb on + strand, within GFF4696at 8.435 kb on + strand, within GFF4696at 8.524 kb on - strand, within GFF4696at 8.534 kb on - strand, within GFF4696at 8.534 kb on - strand, within GFF4696at 8.711 kb on - strandat 8.732 kb on + strandat 8.732 kb on + strandat 8.734 kb on + strandat 8.734 kb on + strandat 8.735 kb on - strandat 8.735 kb on - strandat 8.781 kb on + strand, within GFF4697

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
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5,823 + -0.5
5,972 - GFF4694 0.39 -0.2
6,032 + GFF4694 0.51 -1.0
6,107 - GFF4694 0.66 -1.0
6,107 - GFF4694 0.66 -1.0
6,110 - GFF4694 0.66 -0.2
6,110 - GFF4694 0.66 -0.7
6,110 - GFF4694 0.66 +0.0
6,110 - GFF4694 0.66 +0.2
6,112 - GFF4694 0.67 +1.6
6,112 - GFF4694 0.67 +0.6
6,356 - -0.8
6,393 - +0.7
6,410 + -0.0
6,527 + -1.3
6,555 - -0.7
6,555 - -0.3
6,654 + -1.1
6,655 - -0.3
6,655 - -0.9
6,719 - -0.1
6,843 + -0.9
6,941 + GFF4695 0.17 -0.0
7,066 - GFF4695 0.29 -0.3
7,162 + GFF4695 0.38 -0.9
7,163 - GFF4695 0.38 +0.4
7,163 - GFF4695 0.38 -0.8
7,292 - GFF4695 0.50 -0.1
7,339 + GFF4695 0.54 +0.8
7,339 + GFF4695 0.54 -0.6
7,340 - GFF4695 0.54 -1.0
7,340 - GFF4695 0.54 -0.9
7,340 - GFF4695 0.54 +0.4
7,399 - GFF4695 0.60 -0.2
7,401 - GFF4695 0.60 +0.4
7,401 - GFF4695 0.60 -1.9
7,566 + GFF4695 0.75 -1.5
7,567 - GFF4695 0.75 -0.1
7,567 - GFF4695 0.75 -0.7
7,579 + GFF4695 0.76 -0.5
7,627 + GFF4695 0.81 -1.4
7,627 + GFF4695 0.81 -0.6
7,640 - GFF4695 0.82 -0.2
7,699 + GFF4695 0.87 -0.3
7,876 - +0.1
7,915 + -0.6
8,102 + +0.4
8,174 + GFF4696 0.15 +0.0
8,289 + GFF4696 0.36 +1.1
8,290 - GFF4696 0.36 +0.5
8,299 + GFF4696 0.37 -0.2
8,383 - GFF4696 0.52 +0.4
8,386 - GFF4696 0.53 -1.0
8,400 + GFF4696 0.55 +0.1
8,435 + GFF4696 0.62 +0.2
8,435 + GFF4696 0.62 +0.4
8,524 - GFF4696 0.77 -0.0
8,534 - GFF4696 0.79 +0.8
8,534 - GFF4696 0.79 +0.2
8,711 - +0.7
8,732 + -0.0
8,732 + +0.0
8,734 + -0.9
8,734 + +0.7
8,735 - +0.5
8,735 - +2.5
8,781 + GFF4697 0.14 +0.1

Or see this region's nucleotide sequence