Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4520

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4518 and GFF4519 are separated by 67 nucleotidesGFF4519 and GFF4520 are separated by 21 nucleotidesGFF4520 and GFF4521 are separated by 84 nucleotides GFF4518 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3), at 306,751 to 307,518 GFF4518 GFF4519 - Universal stress protein G, at 307,586 to 307,879 GFF4519 GFF4520 - FIG01045303: hypothetical protein, at 307,901 to 308,152 GFF4520 GFF4521 - Uncharacterized zinc-type alcohol dehydrogenase-like protein ybdR, at 308,237 to 309,475 GFF4521 Position (kb) 307 308 309Strain fitness (log2 ratio) -1 0 1at 306.906 kb on + strand, within GFF4518at 306.946 kb on + strand, within GFF4518at 306.947 kb on - strand, within GFF4518at 306.947 kb on - strand, within GFF4518at 306.980 kb on + strand, within GFF4518at 307.261 kb on - strand, within GFF4518at 307.352 kb on - strand, within GFF4518at 307.491 kb on + strandat 307.574 kb on + strandat 307.588 kb on - strandat 307.673 kb on - strand, within GFF4519at 307.763 kb on - strand, within GFF4519at 307.898 kb on + strandat 308.011 kb on - strand, within GFF4520at 308.011 kb on - strand, within GFF4520at 308.189 kb on + strandat 308.200 kb on - strandat 308.253 kb on - strandat 308.663 kb on + strand, within GFF4521at 308.698 kb on + strand, within GFF4521at 308.699 kb on - strand, within GFF4521at 308.725 kb on + strand, within GFF4521at 309.080 kb on - strand, within GFF4521

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
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306,906 + GFF4518 0.20 -0.0
306,946 + GFF4518 0.25 -0.5
306,947 - GFF4518 0.26 +0.1
306,947 - GFF4518 0.26 -0.1
306,980 + GFF4518 0.30 +0.1
307,261 - GFF4518 0.66 -1.2
307,352 - GFF4518 0.78 +0.6
307,491 + -0.8
307,574 + +0.2
307,588 - -0.5
307,673 - GFF4519 0.30 -0.4
307,763 - GFF4519 0.60 -0.5
307,898 + +0.3
308,011 - GFF4520 0.44 -0.5
308,011 - GFF4520 0.44 -0.4
308,189 + -1.3
308,200 - +0.5
308,253 - -0.2
308,663 + GFF4521 0.34 +1.1
308,698 + GFF4521 0.37 +0.0
308,699 - GFF4521 0.37 +0.6
308,725 + GFF4521 0.39 +1.3
309,080 - GFF4521 0.68 +0.4

Or see this region's nucleotide sequence