Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3383

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3381 and GFF3382 are separated by 10 nucleotidesGFF3382 and GFF3383 are separated by 23 nucleotidesGFF3383 and GFF3384 are separated by 133 nucleotides GFF3381 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 146,314 to 147,318 GFF3381 GFF3382 - Putative deoxyribonuclease YcfH, at 147,329 to 148,126 GFF3382 GFF3383 - hypothetical protein, at 148,150 to 148,287 GFF3383 GFF3384 - PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69), at 148,421 to 149,854 GFF3384 Position (kb) 148 149Strain fitness (log2 ratio) -1 0 1at 147.372 kb on - strandat 147.386 kb on - strandat 147.551 kb on + strand, within GFF3382at 147.624 kb on - strand, within GFF3382at 147.668 kb on - strand, within GFF3382at 147.739 kb on + strand, within GFF3382at 147.786 kb on + strand, within GFF3382at 147.790 kb on - strand, within GFF3382at 147.845 kb on + strand, within GFF3382at 147.927 kb on + strand, within GFF3382at 147.928 kb on - strand, within GFF3382at 147.930 kb on + strand, within GFF3382at 147.950 kb on + strand, within GFF3382at 148.016 kb on + strand, within GFF3382at 148.093 kb on + strandat 148.307 kb on - strandat 148.401 kb on - strandat 148.427 kb on - strandat 148.786 kb on + strand, within GFF3384at 148.787 kb on - strand, within GFF3384at 148.787 kb on - strand, within GFF3384at 148.808 kb on + strand, within GFF3384at 148.809 kb on - strand, within GFF3384at 148.809 kb on - strand, within GFF3384at 148.809 kb on - strand, within GFF3384at 148.810 kb on + strand, within GFF3384at 148.848 kb on - strand, within GFF3384at 149.165 kb on - strand, within GFF3384

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
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147,372 - +1.1
147,386 - +0.7
147,551 + GFF3382 0.28 +1.5
147,624 - GFF3382 0.37 +0.1
147,668 - GFF3382 0.42 +0.4
147,739 + GFF3382 0.51 +1.0
147,786 + GFF3382 0.57 +0.8
147,790 - GFF3382 0.58 -0.4
147,845 + GFF3382 0.65 +0.1
147,927 + GFF3382 0.75 +1.1
147,928 - GFF3382 0.75 +0.6
147,930 + GFF3382 0.75 -0.5
147,950 + GFF3382 0.78 +0.8
148,016 + GFF3382 0.86 +0.8
148,093 + +1.2
148,307 - +0.2
148,401 - +1.0
148,427 - +1.1
148,786 + GFF3384 0.25 +1.0
148,787 - GFF3384 0.26 +0.8
148,787 - GFF3384 0.26 +1.7
148,808 + GFF3384 0.27 +0.6
148,809 - GFF3384 0.27 +1.1
148,809 - GFF3384 0.27 +0.8
148,809 - GFF3384 0.27 +0.9
148,810 + GFF3384 0.27 +0.3
148,848 - GFF3384 0.30 +1.0
149,165 - GFF3384 0.52 +1.5

Or see this region's nucleotide sequence