Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3080

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3079 and GFF3080 are separated by 103 nucleotidesGFF3080 and GFF3081 overlap by 23 nucleotides GFF3079 - Putative response regulator, at 89,162 to 89,908 GFF3079 GFF3080 - FIG074102: hypothetical protein, at 90,012 to 90,569 GFF3080 GFF3081 - Unknown, probable amino acid transporter, at 90,547 to 92,046 GFF3081 Position (kb) 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 89.111 kb on + strandat 89.124 kb on + strandat 89.180 kb on - strandat 89.278 kb on - strand, within GFF3079at 89.480 kb on - strand, within GFF3079at 89.515 kb on + strand, within GFF3079at 89.524 kb on + strand, within GFF3079at 89.573 kb on - strand, within GFF3079at 89.573 kb on - strand, within GFF3079at 89.605 kb on - strand, within GFF3079at 89.643 kb on + strand, within GFF3079at 89.902 kb on + strandat 89.903 kb on - strandat 89.958 kb on + strandat 89.960 kb on + strandat 90.065 kb on + strandat 90.078 kb on - strand, within GFF3080at 90.137 kb on + strand, within GFF3080at 90.145 kb on - strand, within GFF3080at 90.162 kb on + strand, within GFF3080at 90.243 kb on + strand, within GFF3080at 90.266 kb on - strand, within GFF3080at 90.674 kb on - strandat 90.728 kb on - strand, within GFF3081at 90.729 kb on + strand, within GFF3081at 90.729 kb on + strand, within GFF3081at 90.730 kb on - strand, within GFF3081at 90.730 kb on - strand, within GFF3081at 90.733 kb on + strand, within GFF3081at 90.733 kb on + strand, within GFF3081at 90.734 kb on - strand, within GFF3081at 90.768 kb on + strand, within GFF3081at 90.771 kb on + strand, within GFF3081at 90.784 kb on - strand, within GFF3081at 90.861 kb on + strand, within GFF3081at 90.865 kb on + strand, within GFF3081at 90.866 kb on - strand, within GFF3081at 90.866 kb on - strand, within GFF3081at 90.897 kb on - strand, within GFF3081at 90.901 kb on + strand, within GFF3081at 90.902 kb on - strand, within GFF3081at 90.977 kb on - strand, within GFF3081at 91.082 kb on + strand, within GFF3081at 91.083 kb on - strand, within GFF3081at 91.084 kb on + strand, within GFF3081at 91.086 kb on + strand, within GFF3081at 91.117 kb on - strand, within GFF3081at 91.203 kb on + strand, within GFF3081at 91.216 kb on - strand, within GFF3081at 91.296 kb on + strand, within GFF3081at 91.296 kb on + strand, within GFF3081at 91.296 kb on + strand, within GFF3081at 91.297 kb on - strand, within GFF3081at 91.297 kb on - strand, within GFF3081at 91.297 kb on - strand, within GFF3081at 91.424 kb on + strand, within GFF3081

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
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89,111 + +1.1
89,124 + -2.1
89,180 - -0.1
89,278 - GFF3079 0.16 +1.2
89,480 - GFF3079 0.43 +0.6
89,515 + GFF3079 0.47 +0.1
89,524 + GFF3079 0.48 +0.1
89,573 - GFF3079 0.55 -0.2
89,573 - GFF3079 0.55 -0.8
89,605 - GFF3079 0.59 +0.6
89,643 + GFF3079 0.64 -0.2
89,902 + -0.3
89,903 - -1.0
89,958 + +0.1
89,960 + +0.5
90,065 + -0.3
90,078 - GFF3080 0.12 -0.2
90,137 + GFF3080 0.22 +0.8
90,145 - GFF3080 0.24 -0.1
90,162 + GFF3080 0.27 -0.7
90,243 + GFF3080 0.41 +0.6
90,266 - GFF3080 0.46 +0.0
90,674 - +0.3
90,728 - GFF3081 0.12 -0.7
90,729 + GFF3081 0.12 -0.0
90,729 + GFF3081 0.12 -1.1
90,730 - GFF3081 0.12 -1.7
90,730 - GFF3081 0.12 +0.7
90,733 + GFF3081 0.12 +0.0
90,733 + GFF3081 0.12 -0.8
90,734 - GFF3081 0.12 -0.4
90,768 + GFF3081 0.15 -1.1
90,771 + GFF3081 0.15 -0.7
90,784 - GFF3081 0.16 -0.3
90,861 + GFF3081 0.21 -1.2
90,865 + GFF3081 0.21 -0.4
90,866 - GFF3081 0.21 +0.9
90,866 - GFF3081 0.21 -0.9
90,897 - GFF3081 0.23 -0.4
90,901 + GFF3081 0.24 +0.8
90,902 - GFF3081 0.24 +0.0
90,977 - GFF3081 0.29 +0.4
91,082 + GFF3081 0.36 +0.4
91,083 - GFF3081 0.36 -0.4
91,084 + GFF3081 0.36 -0.5
91,086 + GFF3081 0.36 +0.5
91,117 - GFF3081 0.38 +1.0
91,203 + GFF3081 0.44 -0.4
91,216 - GFF3081 0.45 -0.2
91,296 + GFF3081 0.50 +2.0
91,296 + GFF3081 0.50 -0.8
91,296 + GFF3081 0.50 -0.5
91,297 - GFF3081 0.50 -0.7
91,297 - GFF3081 0.50 -0.1
91,297 - GFF3081 0.50 +0.2
91,424 + GFF3081 0.58 +0.4

Or see this region's nucleotide sequence