Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2296

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2295 and GFF2296 overlap by 7 nucleotidesGFF2296 and GFF2297 overlap by 1 nucleotides GFF2295 - Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component, at 82,425 to 83,960 GFF2295 GFF2296 - Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC, at 83,954 to 84,997 GFF2296 GFF2297 - Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD, at 84,997 to 85,995 GFF2297 Position (kb) 83 84 85Strain fitness (log2 ratio) -2 -1 0 1at 83.129 kb on + strand, within GFF2295at 83.130 kb on - strand, within GFF2295at 83.227 kb on + strand, within GFF2295at 83.230 kb on + strand, within GFF2295at 83.267 kb on + strand, within GFF2295at 83.268 kb on - strand, within GFF2295at 83.449 kb on - strand, within GFF2295at 83.821 kb on + strandat 83.822 kb on - strandat 83.842 kb on + strandat 83.842 kb on + strandat 83.842 kb on + strandat 83.843 kb on - strandat 83.843 kb on - strandat 83.844 kb on + strandat 83.844 kb on + strandat 83.844 kb on + strandat 83.845 kb on - strandat 83.845 kb on - strandat 83.897 kb on + strandat 83.906 kb on + strandat 83.906 kb on + strandat 84.013 kb on - strandat 84.044 kb on + strandat 84.147 kb on + strand, within GFF2296at 84.209 kb on + strand, within GFF2296at 84.241 kb on - strand, within GFF2296at 84.243 kb on + strand, within GFF2296at 84.244 kb on - strand, within GFF2296at 84.355 kb on - strand, within GFF2296at 84.469 kb on + strand, within GFF2296at 84.841 kb on - strand, within GFF2296at 84.922 kb on + strandat 85.043 kb on + strandat 85.298 kb on + strand, within GFF2297at 85.323 kb on + strand, within GFF2297at 85.407 kb on + strand, within GFF2297at 85.557 kb on + strand, within GFF2297at 85.636 kb on + strand, within GFF2297at 85.636 kb on + strand, within GFF2297at 85.780 kb on + strand, within GFF2297

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
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83,129 + GFF2295 0.46 -0.4
83,130 - GFF2295 0.46 +0.6
83,227 + GFF2295 0.52 -0.8
83,230 + GFF2295 0.52 -0.7
83,267 + GFF2295 0.55 +0.0
83,268 - GFF2295 0.55 +0.3
83,449 - GFF2295 0.67 -0.1
83,821 + -0.8
83,822 - -0.1
83,842 + -0.8
83,842 + -1.2
83,842 + +0.3
83,843 - -0.2
83,843 - +0.0
83,844 + +1.2
83,844 + -1.7
83,844 + -0.7
83,845 - -0.7
83,845 - -0.1
83,897 + -0.3
83,906 + -1.4
83,906 + -1.0
84,013 - -2.0
84,044 + -0.4
84,147 + GFF2296 0.18 -0.5
84,209 + GFF2296 0.24 -1.2
84,241 - GFF2296 0.27 +0.1
84,243 + GFF2296 0.28 +0.1
84,244 - GFF2296 0.28 +0.8
84,355 - GFF2296 0.38 +0.2
84,469 + GFF2296 0.49 -0.4
84,841 - GFF2296 0.85 +0.2
84,922 + -1.4
85,043 + -0.1
85,298 + GFF2297 0.30 -0.6
85,323 + GFF2297 0.33 -0.3
85,407 + GFF2297 0.41 -0.3
85,557 + GFF2297 0.56 +0.2
85,636 + GFF2297 0.64 +0.9
85,636 + GFF2297 0.64 -0.5
85,780 + GFF2297 0.78 -0.2

Or see this region's nucleotide sequence