Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2051

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2049 and GFF2050 overlap by 4 nucleotidesGFF2050 and GFF2051 are separated by 82 nucleotidesGFF2051 and GFF2052 are separated by 14 nucleotidesGFF2052 and GFF2053 are separated by 58 nucleotides GFF2049 - FIG01045978: hypothetical protein, at 15,337 to 15,576 GFF2049 GFF2050 - Pyridoxal kinase (EC 2.7.1.35), at 15,573 to 16,439 GFF2050 GFF2051 - Predicted transcriptional regulator of pyridoxine metabolism, at 16,522 to 17,814 GFF2051 GFF2052 - Putative amidotransferase, at 17,829 to 18,548 GFF2052 GFF2053 - hypothetical protein, at 18,607 to 18,987 GFF2053 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1 2at 15.945 kb on + strand, within GFF2050at 15.945 kb on + strand, within GFF2050at 15.945 kb on + strand, within GFF2050at 16.019 kb on - strand, within GFF2050at 16.062 kb on - strand, within GFF2050at 16.062 kb on - strand, within GFF2050at 16.062 kb on - strand, within GFF2050at 16.139 kb on - strand, within GFF2050at 16.307 kb on + strand, within GFF2050at 16.480 kb on - strandat 16.670 kb on - strand, within GFF2051at 16.672 kb on - strand, within GFF2051at 16.971 kb on + strand, within GFF2051at 17.055 kb on + strand, within GFF2051at 17.261 kb on + strand, within GFF2051at 17.351 kb on + strand, within GFF2051at 17.351 kb on + strand, within GFF2051at 17.394 kb on + strand, within GFF2051at 17.394 kb on + strand, within GFF2051at 17.513 kb on - strand, within GFF2051at 17.513 kb on - strand, within GFF2051at 17.646 kb on + strand, within GFF2051at 17.739 kb on + strandat 17.928 kb on + strand, within GFF2052at 18.182 kb on + strand, within GFF2052at 18.183 kb on - strand, within GFF2052at 18.183 kb on - strand, within GFF2052at 18.264 kb on - strand, within GFF2052at 18.325 kb on + strand, within GFF2052at 18.366 kb on - strand, within GFF2052at 18.447 kb on - strand, within GFF2052

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
remove
15,945 + GFF2050 0.43 -0.5
15,945 + GFF2050 0.43 -0.3
15,945 + GFF2050 0.43 +0.5
16,019 - GFF2050 0.51 -0.2
16,062 - GFF2050 0.56 +0.4
16,062 - GFF2050 0.56 -1.0
16,062 - GFF2050 0.56 -1.1
16,139 - GFF2050 0.65 -0.1
16,307 + GFF2050 0.85 +2.1
16,480 - -0.1
16,670 - GFF2051 0.11 -1.5
16,672 - GFF2051 0.12 -1.1
16,971 + GFF2051 0.35 -0.8
17,055 + GFF2051 0.41 -1.0
17,261 + GFF2051 0.57 -1.2
17,351 + GFF2051 0.64 -0.8
17,351 + GFF2051 0.64 +0.0
17,394 + GFF2051 0.67 -2.5
17,394 + GFF2051 0.67 -0.9
17,513 - GFF2051 0.77 -1.7
17,513 - GFF2051 0.77 -1.1
17,646 + GFF2051 0.87 -1.5
17,739 + +1.1
17,928 + GFF2052 0.14 -1.9
18,182 + GFF2052 0.49 +0.5
18,183 - GFF2052 0.49 -0.8
18,183 - GFF2052 0.49 +0.3
18,264 - GFF2052 0.60 +0.3
18,325 + GFF2052 0.69 +0.3
18,366 - GFF2052 0.75 +0.8
18,447 - GFF2052 0.86 -0.2

Or see this region's nucleotide sequence