Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4033

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4032 and Echvi_4033 are separated by 642 nucleotidesEchvi_4033 and Echvi_4034 are separated by 321 nucleotides Echvi_4032: Echvi_4032 - amino acid carrier protein, at 4,827,931 to 4,829,289 _4032 Echvi_4033: Echvi_4033 - glutamate 5-kinase (EC 2.7.2.11) (from data), at 4,829,932 to 4,831,020 _4033 Echvi_4034: Echvi_4034 - hypothetical protein, at 4,831,342 to 4,832,262 _4034 Position (kb) 4829 4830 4831 4832Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4828.959 kb on + strand, within Echvi_4032at 4828.959 kb on + strand, within Echvi_4032at 4828.965 kb on - strand, within Echvi_4032at 4829.045 kb on - strand, within Echvi_4032at 4829.109 kb on + strand, within Echvi_4032at 4829.109 kb on + strand, within Echvi_4032at 4829.109 kb on + strand, within Echvi_4032at 4829.110 kb on - strand, within Echvi_4032at 4829.110 kb on - strand, within Echvi_4032at 4829.198 kb on + strandat 4829.198 kb on + strandat 4829.209 kb on + strandat 4829.210 kb on - strandat 4829.263 kb on - strandat 4829.263 kb on - strandat 4829.266 kb on - strandat 4829.290 kb on - strandat 4829.301 kb on - strandat 4829.391 kb on - strandat 4829.392 kb on + strandat 4829.392 kb on + strandat 4829.392 kb on + strandat 4829.399 kb on + strandat 4829.400 kb on - strandat 4829.446 kb on + strandat 4829.446 kb on + strandat 4829.446 kb on + strandat 4829.458 kb on + strandat 4829.465 kb on + strandat 4829.469 kb on - strandat 4829.501 kb on + strandat 4829.509 kb on - strandat 4829.546 kb on - strandat 4829.546 kb on - strandat 4829.595 kb on + strandat 4829.628 kb on - strandat 4829.630 kb on - strandat 4829.630 kb on - strandat 4829.663 kb on + strandat 4829.664 kb on - strandat 4829.774 kb on + strandat 4829.775 kb on - strandat 4829.786 kb on - strandat 4829.786 kb on - strandat 4829.860 kb on - strandat 4829.886 kb on - strandat 4829.921 kb on - strandat 4829.931 kb on + strandat 4829.981 kb on + strandat 4829.982 kb on - strandat 4830.046 kb on + strand, within Echvi_4033at 4830.101 kb on - strand, within Echvi_4033at 4830.108 kb on + strand, within Echvi_4033at 4830.108 kb on + strand, within Echvi_4033at 4830.109 kb on - strand, within Echvi_4033at 4830.196 kb on + strand, within Echvi_4033at 4830.219 kb on + strand, within Echvi_4033at 4830.321 kb on + strand, within Echvi_4033at 4830.322 kb on - strand, within Echvi_4033at 4830.381 kb on + strand, within Echvi_4033at 4830.580 kb on - strand, within Echvi_4033at 4830.667 kb on + strand, within Echvi_4033at 4830.690 kb on + strand, within Echvi_4033at 4830.694 kb on + strand, within Echvi_4033at 4830.755 kb on - strand, within Echvi_4033at 4830.755 kb on - strand, within Echvi_4033at 4830.759 kb on + strand, within Echvi_4033at 4830.929 kb on - strandat 4830.994 kb on + strandat 4830.994 kb on + strandat 4830.994 kb on + strandat 4830.995 kb on - strandat 4830.995 kb on - strandat 4831.014 kb on + strandat 4831.014 kb on + strandat 4831.014 kb on + strandat 4831.015 kb on - strandat 4831.019 kb on - strandat 4831.019 kb on - strandat 4831.019 kb on - strandat 4831.094 kb on + strandat 4831.167 kb on + strandat 4831.271 kb on + strandat 4831.274 kb on - strandat 4831.279 kb on + strandat 4831.279 kb on + strandat 4831.290 kb on + strandat 4831.391 kb on + strandat 4831.392 kb on - strandat 4831.440 kb on + strand, within Echvi_4034at 4831.441 kb on - strand, within Echvi_4034at 4831.444 kb on - strand, within Echvi_4034at 4831.444 kb on - strand, within Echvi_4034at 4831.499 kb on + strand, within Echvi_4034at 4831.499 kb on + strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.500 kb on - strand, within Echvi_4034at 4831.501 kb on + strand, within Echvi_4034at 4831.501 kb on + strand, within Echvi_4034at 4831.502 kb on - strand, within Echvi_4034at 4831.641 kb on + strand, within Echvi_4034at 4831.641 kb on + strand, within Echvi_4034at 4831.642 kb on - strand, within Echvi_4034at 4831.737 kb on - strand, within Echvi_4034at 4831.831 kb on - strand, within Echvi_4034at 4831.882 kb on + strand, within Echvi_4034at 4831.882 kb on + strand, within Echvi_4034at 4831.883 kb on - strand, within Echvi_4034at 4831.883 kb on - strand, within Echvi_4034at 4831.885 kb on - strand, within Echvi_4034at 4831.948 kb on - strand, within Echvi_4034at 4831.974 kb on + strand, within Echvi_4034at 4831.975 kb on - strand, within Echvi_4034

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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4,828,959 + Echvi_4032 0.76 -0.7
4,828,959 + Echvi_4032 0.76 +0.4
4,828,965 - Echvi_4032 0.76 -0.4
4,829,045 - Echvi_4032 0.82 +0.5
4,829,109 + Echvi_4032 0.87 +0.7
4,829,109 + Echvi_4032 0.87 +0.6
4,829,109 + Echvi_4032 0.87 -0.0
4,829,110 - Echvi_4032 0.87 -1.3
4,829,110 - Echvi_4032 0.87 +0.2
4,829,198 + -2.2
4,829,198 + +0.2
4,829,209 + +0.5
4,829,210 - +0.4
4,829,263 - +0.2
4,829,263 - -0.4
4,829,266 - -0.0
4,829,290 - +0.2
4,829,301 - -0.2
4,829,391 - -0.1
4,829,392 + +0.0
4,829,392 + +0.3
4,829,392 + +0.2
4,829,399 + -0.6
4,829,400 - -0.3
4,829,446 + +0.2
4,829,446 + -0.4
4,829,446 + +0.2
4,829,458 + +0.5
4,829,465 + -0.5
4,829,469 - -1.5
4,829,501 + -0.5
4,829,509 - -1.2
4,829,546 - -0.0
4,829,546 - -0.9
4,829,595 + -1.4
4,829,628 - +0.3
4,829,630 - -0.5
4,829,630 - -1.1
4,829,663 + +0.3
4,829,664 - -0.9
4,829,774 + +0.5
4,829,775 - -1.0
4,829,786 - +0.3
4,829,786 - -0.2
4,829,860 - -0.7
4,829,886 - +0.8
4,829,921 - -1.2
4,829,931 + +0.5
4,829,981 + -4.3
4,829,982 - -4.1
4,830,046 + Echvi_4033 0.10 -1.2
4,830,101 - Echvi_4033 0.16 -1.5
4,830,108 + Echvi_4033 0.16 +0.8
4,830,108 + Echvi_4033 0.16 -3.5
4,830,109 - Echvi_4033 0.16 -0.5
4,830,196 + Echvi_4033 0.24 -3.4
4,830,219 + Echvi_4033 0.26 -3.3
4,830,321 + Echvi_4033 0.36 -2.0
4,830,322 - Echvi_4033 0.36 -2.8
4,830,381 + Echvi_4033 0.41 -0.5
4,830,580 - Echvi_4033 0.60 -3.8
4,830,667 + Echvi_4033 0.67 -0.2
4,830,690 + Echvi_4033 0.70 -5.0
4,830,694 + Echvi_4033 0.70 -0.8
4,830,755 - Echvi_4033 0.76 -1.9
4,830,755 - Echvi_4033 0.76 +0.8
4,830,759 + Echvi_4033 0.76 -2.9
4,830,929 - -3.3
4,830,994 + -3.1
4,830,994 + -2.8
4,830,994 + -1.9
4,830,995 - -1.3
4,830,995 - -3.6
4,831,014 + -0.8
4,831,014 + +0.1
4,831,014 + +0.5
4,831,015 - -3.2
4,831,019 - -0.8
4,831,019 - -0.8
4,831,019 - +1.1
4,831,094 + +0.2
4,831,167 + -0.1
4,831,271 + +0.5
4,831,274 - +0.3
4,831,279 + +0.6
4,831,279 + +0.4
4,831,290 + +0.4
4,831,391 + -2.6
4,831,392 - -1.1
4,831,440 + Echvi_4034 0.11 -0.8
4,831,441 - Echvi_4034 0.11 +0.8
4,831,444 - Echvi_4034 0.11 -0.3
4,831,444 - Echvi_4034 0.11 -0.0
4,831,499 + Echvi_4034 0.17 +0.4
4,831,499 + Echvi_4034 0.17 -1.3
4,831,500 - Echvi_4034 0.17 -0.9
4,831,500 - Echvi_4034 0.17 -0.2
4,831,500 - Echvi_4034 0.17 +0.4
4,831,500 - Echvi_4034 0.17 +0.3
4,831,500 - Echvi_4034 0.17 -0.5
4,831,501 + Echvi_4034 0.17 +0.0
4,831,501 + Echvi_4034 0.17 +0.8
4,831,502 - Echvi_4034 0.17 -1.0
4,831,641 + Echvi_4034 0.32 +0.9
4,831,641 + Echvi_4034 0.32 +1.4
4,831,642 - Echvi_4034 0.33 -0.6
4,831,737 - Echvi_4034 0.43 -0.7
4,831,831 - Echvi_4034 0.53 -1.1
4,831,882 + Echvi_4034 0.59 +0.5
4,831,882 + Echvi_4034 0.59 +0.6
4,831,883 - Echvi_4034 0.59 +0.2
4,831,883 - Echvi_4034 0.59 -1.3
4,831,885 - Echvi_4034 0.59 +0.4
4,831,948 - Echvi_4034 0.66 +0.7
4,831,974 + Echvi_4034 0.69 +0.5
4,831,975 - Echvi_4034 0.69 +0.0

Or see this region's nucleotide sequence