Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2340

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2339 and Echvi_2340 are separated by 121 nucleotidesEchvi_2340 and Echvi_2341 are separated by 226 nucleotides Echvi_2339: Echvi_2339 - Cytochrome bd-type quinol oxidase, subunit 1, at 2,775,800 to 2,777,125 _2339 Echvi_2340: Echvi_2340 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,777,247 to 2,778,335 _2340 Echvi_2341: Echvi_2341 - naphthoate synthase (dihydroxynaphthoic acid synthetase), at 2,778,562 to 2,779,395 _2341 Position (kb) 2777 2778 2779Strain fitness (log2 ratio) -1 0 1at 2776.452 kb on - strand, within Echvi_2339at 2776.495 kb on + strand, within Echvi_2339at 2776.496 kb on - strand, within Echvi_2339at 2776.517 kb on - strand, within Echvi_2339at 2776.517 kb on - strand, within Echvi_2339at 2776.642 kb on - strand, within Echvi_2339at 2776.737 kb on - strand, within Echvi_2339at 2776.786 kb on - strand, within Echvi_2339at 2777.134 kb on - strandat 2777.162 kb on + strandat 2777.175 kb on - strandat 2777.203 kb on - strandat 2777.214 kb on - strandat 2777.275 kb on - strandat 2778.362 kb on + strandat 2778.430 kb on + strandat 2778.430 kb on + strandat 2778.431 kb on - strandat 2778.444 kb on + strandat 2778.466 kb on - strandat 2778.519 kb on + strandat 2778.520 kb on - strandat 2778.528 kb on + strandat 2778.528 kb on + strandat 2778.529 kb on - strandat 2778.533 kb on - strandat 2778.533 kb on - strandat 2778.537 kb on + strandat 2778.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,776,452 - Echvi_2339 0.49 -1.0
2,776,495 + Echvi_2339 0.52 -0.4
2,776,496 - Echvi_2339 0.52 -1.0
2,776,517 - Echvi_2339 0.54 +0.5
2,776,517 - Echvi_2339 0.54 -0.8
2,776,642 - Echvi_2339 0.63 -0.5
2,776,737 - Echvi_2339 0.71 -1.0
2,776,786 - Echvi_2339 0.74 -0.9
2,777,134 - -0.6
2,777,162 + -1.5
2,777,175 - -1.2
2,777,203 - -0.5
2,777,214 - -0.5
2,777,275 - -0.1
2,778,362 + +0.7
2,778,430 + -0.6
2,778,430 + +0.0
2,778,431 - -0.2
2,778,444 + +0.6
2,778,466 - +0.3
2,778,519 + +0.0
2,778,520 - -0.3
2,778,528 + -1.2
2,778,528 + +0.1
2,778,529 - -1.4
2,778,533 - -0.5
2,778,533 - +0.1
2,778,537 + -1.5
2,778,538 - -0.5

Or see this region's nucleotide sequence