Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2003

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2002 and Echvi_2003 are separated by 111 nucleotidesEchvi_2003 and Echvi_2004 overlap by 1 nucleotidesEchvi_2004 and Echvi_2005 are separated by 96 nucleotidesEchvi_2005 and Echvi_2006 are separated by 87 nucleotides Echvi_2002: Echvi_2002 - threonine synthase, at 2,353,849 to 2,355,141 _2002 Echvi_2003: Echvi_2003 - Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component, at 2,355,253 to 2,357,106 _2003 Echvi_2004: Echvi_2004 - Predicted transcriptional regulator, at 2,357,106 to 2,357,480 _2004 Echvi_2005: Echvi_2005 - hypothetical protein, at 2,357,577 to 2,357,699 _2005 Echvi_2006: Echvi_2006 - Uncharacterized conserved protein, at 2,357,787 to 2,358,548 _2006 Position (kb) 2355 2356 2357 2358Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2354.285 kb on - strand, within Echvi_2002at 2354.358 kb on + strand, within Echvi_2002at 2354.472 kb on + strand, within Echvi_2002at 2354.472 kb on + strand, within Echvi_2002at 2354.473 kb on - strand, within Echvi_2002at 2354.473 kb on - strand, within Echvi_2002at 2354.473 kb on - strand, within Echvi_2002at 2354.473 kb on - strand, within Echvi_2002at 2354.519 kb on + strand, within Echvi_2002at 2354.525 kb on - strand, within Echvi_2002at 2354.530 kb on + strand, within Echvi_2002at 2354.537 kb on - strand, within Echvi_2002at 2354.537 kb on - strand, within Echvi_2002at 2354.537 kb on - strand, within Echvi_2002at 2354.538 kb on + strand, within Echvi_2002at 2354.538 kb on + strand, within Echvi_2002at 2354.739 kb on + strand, within Echvi_2002at 2354.739 kb on + strand, within Echvi_2002at 2354.791 kb on + strand, within Echvi_2002at 2354.791 kb on + strand, within Echvi_2002at 2354.792 kb on - strand, within Echvi_2002at 2354.792 kb on - strand, within Echvi_2002at 2354.823 kb on - strand, within Echvi_2002at 2354.920 kb on + strand, within Echvi_2002at 2354.930 kb on + strand, within Echvi_2002at 2354.931 kb on - strand, within Echvi_2002at 2355.122 kb on - strandat 2355.140 kb on - strandat 2355.142 kb on + strandat 2355.156 kb on - strandat 2355.240 kb on + strandat 2355.359 kb on - strandat 2355.359 kb on - strandat 2355.409 kb on - strandat 2355.514 kb on + strand, within Echvi_2003at 2355.544 kb on + strand, within Echvi_2003at 2355.553 kb on + strand, within Echvi_2003at 2355.641 kb on - strand, within Echvi_2003at 2355.742 kb on + strand, within Echvi_2003at 2355.742 kb on + strand, within Echvi_2003at 2355.743 kb on - strand, within Echvi_2003at 2355.743 kb on - strand, within Echvi_2003at 2355.860 kb on + strand, within Echvi_2003at 2355.864 kb on + strand, within Echvi_2003at 2355.864 kb on + strand, within Echvi_2003at 2355.865 kb on - strand, within Echvi_2003at 2355.865 kb on - strand, within Echvi_2003at 2355.872 kb on + strand, within Echvi_2003at 2355.878 kb on + strand, within Echvi_2003at 2355.878 kb on + strand, within Echvi_2003at 2355.878 kb on + strand, within Echvi_2003at 2355.879 kb on - strand, within Echvi_2003at 2355.960 kb on + strand, within Echvi_2003at 2355.961 kb on - strand, within Echvi_2003at 2355.989 kb on + strand, within Echvi_2003at 2356.013 kb on - strand, within Echvi_2003at 2356.016 kb on + strand, within Echvi_2003at 2356.017 kb on - strand, within Echvi_2003at 2356.017 kb on - strand, within Echvi_2003at 2356.031 kb on - strand, within Echvi_2003at 2356.031 kb on - strand, within Echvi_2003at 2356.108 kb on + strand, within Echvi_2003at 2356.366 kb on + strand, within Echvi_2003at 2356.367 kb on - strand, within Echvi_2003at 2356.401 kb on - strand, within Echvi_2003at 2356.437 kb on + strand, within Echvi_2003at 2356.464 kb on + strand, within Echvi_2003at 2356.514 kb on + strand, within Echvi_2003at 2356.514 kb on + strand, within Echvi_2003at 2356.563 kb on + strand, within Echvi_2003at 2356.563 kb on + strand, within Echvi_2003at 2356.563 kb on + strand, within Echvi_2003at 2356.563 kb on + strand, within Echvi_2003at 2356.565 kb on + strand, within Echvi_2003at 2356.565 kb on + strand, within Echvi_2003at 2356.565 kb on + strand, within Echvi_2003at 2356.566 kb on - strand, within Echvi_2003at 2356.566 kb on - strand, within Echvi_2003at 2356.642 kb on + strand, within Echvi_2003at 2356.642 kb on + strand, within Echvi_2003at 2356.643 kb on - strand, within Echvi_2003at 2356.681 kb on + strand, within Echvi_2003at 2356.708 kb on + strand, within Echvi_2003at 2356.794 kb on + strand, within Echvi_2003at 2356.795 kb on - strand, within Echvi_2003at 2356.795 kb on - strand, within Echvi_2003at 2356.821 kb on + strand, within Echvi_2003at 2356.822 kb on - strand, within Echvi_2003at 2356.908 kb on + strand, within Echvi_2003at 2356.936 kb on + strandat 2356.977 kb on + strandat 2356.977 kb on + strandat 2356.978 kb on - strandat 2356.978 kb on - strandat 2356.994 kb on - strandat 2357.085 kb on + strandat 2357.107 kb on + strandat 2357.143 kb on - strandat 2357.143 kb on - strandat 2357.151 kb on + strand, within Echvi_2004at 2357.151 kb on + strand, within Echvi_2004at 2357.152 kb on - strand, within Echvi_2004at 2357.152 kb on - strand, within Echvi_2004at 2357.152 kb on - strand, within Echvi_2004at 2357.284 kb on + strand, within Echvi_2004at 2357.284 kb on + strand, within Echvi_2004at 2357.284 kb on + strand, within Echvi_2004at 2357.284 kb on + strand, within Echvi_2004at 2357.284 kb on + strand, within Echvi_2004at 2357.284 kb on + strand, within Echvi_2004at 2357.284 kb on + strand, within Echvi_2004at 2357.285 kb on - strand, within Echvi_2004at 2357.285 kb on - strand, within Echvi_2004at 2357.285 kb on - strand, within Echvi_2004at 2357.285 kb on - strand, within Echvi_2004at 2357.285 kb on - strand, within Echvi_2004at 2357.285 kb on - strand, within Echvi_2004at 2357.288 kb on + strand, within Echvi_2004at 2357.288 kb on + strand, within Echvi_2004at 2357.357 kb on + strand, within Echvi_2004at 2357.409 kb on + strand, within Echvi_2004at 2357.410 kb on - strand, within Echvi_2004at 2357.471 kb on + strandat 2357.472 kb on - strandat 2357.474 kb on - strandat 2357.474 kb on - strandat 2357.489 kb on + strandat 2357.528 kb on + strandat 2357.592 kb on + strand, within Echvi_2005at 2357.671 kb on + strand, within Echvi_2005at 2357.672 kb on - strand, within Echvi_2005at 2357.681 kb on + strand, within Echvi_2005at 2357.681 kb on + strand, within Echvi_2005at 2357.682 kb on - strand, within Echvi_2005at 2357.682 kb on - strand, within Echvi_2005at 2357.686 kb on - strand, within Echvi_2005at 2357.724 kb on + strandat 2357.786 kb on + strandat 2357.804 kb on + strandat 2357.804 kb on + strandat 2357.907 kb on + strand, within Echvi_2006at 2357.908 kb on - strand, within Echvi_2006at 2357.936 kb on + strand, within Echvi_2006at 2357.963 kb on + strand, within Echvi_2006

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,354,285 - Echvi_2002 0.34 -0.5
2,354,358 + Echvi_2002 0.39 -0.4
2,354,472 + Echvi_2002 0.48 -0.6
2,354,472 + Echvi_2002 0.48 -2.4
2,354,473 - Echvi_2002 0.48 -3.0
2,354,473 - Echvi_2002 0.48 -3.1
2,354,473 - Echvi_2002 0.48 -3.6
2,354,473 - Echvi_2002 0.48 -0.9
2,354,519 + Echvi_2002 0.52 -0.9
2,354,525 - Echvi_2002 0.52 -1.2
2,354,530 + Echvi_2002 0.53 -2.0
2,354,537 - Echvi_2002 0.53 -2.2
2,354,537 - Echvi_2002 0.53 -1.4
2,354,537 - Echvi_2002 0.53 -0.9
2,354,538 + Echvi_2002 0.53 -2.5
2,354,538 + Echvi_2002 0.53 -2.5
2,354,739 + Echvi_2002 0.69 -1.1
2,354,739 + Echvi_2002 0.69 -2.5
2,354,791 + Echvi_2002 0.73 -1.2
2,354,791 + Echvi_2002 0.73 -2.3
2,354,792 - Echvi_2002 0.73 -0.9
2,354,792 - Echvi_2002 0.73 -3.4
2,354,823 - Echvi_2002 0.75 -1.8
2,354,920 + Echvi_2002 0.83 -2.5
2,354,930 + Echvi_2002 0.84 -2.8
2,354,931 - Echvi_2002 0.84 -2.2
2,355,122 - -2.5
2,355,140 - +0.1
2,355,142 + +0.5
2,355,156 - +0.9
2,355,240 + +0.2
2,355,359 - +1.5
2,355,359 - -1.0
2,355,409 - -0.3
2,355,514 + Echvi_2003 0.14 -0.4
2,355,544 + Echvi_2003 0.16 +0.4
2,355,553 + Echvi_2003 0.16 -1.2
2,355,641 - Echvi_2003 0.21 +0.7
2,355,742 + Echvi_2003 0.26 -0.7
2,355,742 + Echvi_2003 0.26 -0.4
2,355,743 - Echvi_2003 0.26 +0.3
2,355,743 - Echvi_2003 0.26 -0.7
2,355,860 + Echvi_2003 0.33 +0.9
2,355,864 + Echvi_2003 0.33 +0.1
2,355,864 + Echvi_2003 0.33 +1.3
2,355,865 - Echvi_2003 0.33 +3.5
2,355,865 - Echvi_2003 0.33 -1.5
2,355,872 + Echvi_2003 0.33 -0.9
2,355,878 + Echvi_2003 0.34 -0.4
2,355,878 + Echvi_2003 0.34 +1.2
2,355,878 + Echvi_2003 0.34 +0.4
2,355,879 - Echvi_2003 0.34 -0.4
2,355,960 + Echvi_2003 0.38 -0.3
2,355,961 - Echvi_2003 0.38 +1.6
2,355,989 + Echvi_2003 0.40 -1.4
2,356,013 - Echvi_2003 0.41 -0.8
2,356,016 + Echvi_2003 0.41 -1.7
2,356,017 - Echvi_2003 0.41 +0.8
2,356,017 - Echvi_2003 0.41 +0.7
2,356,031 - Echvi_2003 0.42 +1.6
2,356,031 - Echvi_2003 0.42 +0.2
2,356,108 + Echvi_2003 0.46 +0.8
2,356,366 + Echvi_2003 0.60 -0.1
2,356,367 - Echvi_2003 0.60 -2.2
2,356,401 - Echvi_2003 0.62 +0.3
2,356,437 + Echvi_2003 0.64 +0.3
2,356,464 + Echvi_2003 0.65 -0.2
2,356,514 + Echvi_2003 0.68 +0.0
2,356,514 + Echvi_2003 0.68 -1.0
2,356,563 + Echvi_2003 0.71 +0.9
2,356,563 + Echvi_2003 0.71 +0.3
2,356,563 + Echvi_2003 0.71 +0.4
2,356,563 + Echvi_2003 0.71 -2.2
2,356,565 + Echvi_2003 0.71 +0.6
2,356,565 + Echvi_2003 0.71 +0.2
2,356,565 + Echvi_2003 0.71 +0.1
2,356,566 - Echvi_2003 0.71 -1.1
2,356,566 - Echvi_2003 0.71 +0.2
2,356,642 + Echvi_2003 0.75 +0.3
2,356,642 + Echvi_2003 0.75 -0.7
2,356,643 - Echvi_2003 0.75 +1.1
2,356,681 + Echvi_2003 0.77 -0.6
2,356,708 + Echvi_2003 0.78 +0.5
2,356,794 + Echvi_2003 0.83 -0.5
2,356,795 - Echvi_2003 0.83 +0.2
2,356,795 - Echvi_2003 0.83 +0.4
2,356,821 + Echvi_2003 0.85 -0.9
2,356,822 - Echvi_2003 0.85 +0.5
2,356,908 + Echvi_2003 0.89 +1.1
2,356,936 + +1.1
2,356,977 + +0.2
2,356,977 + +0.2
2,356,978 - -0.4
2,356,978 - -0.1
2,356,994 - +0.1
2,357,085 + -0.0
2,357,107 + +0.5
2,357,143 - -0.8
2,357,143 - +0.6
2,357,151 + Echvi_2004 0.12 +0.6
2,357,151 + Echvi_2004 0.12 +0.0
2,357,152 - Echvi_2004 0.12 +0.5
2,357,152 - Echvi_2004 0.12 -0.5
2,357,152 - Echvi_2004 0.12 +0.5
2,357,284 + Echvi_2004 0.47 +0.3
2,357,284 + Echvi_2004 0.47 +1.5
2,357,284 + Echvi_2004 0.47 -0.3
2,357,284 + Echvi_2004 0.47 -1.0
2,357,284 + Echvi_2004 0.47 +0.8
2,357,284 + Echvi_2004 0.47 +0.2
2,357,284 + Echvi_2004 0.47 +0.3
2,357,285 - Echvi_2004 0.48 -0.3
2,357,285 - Echvi_2004 0.48 +0.6
2,357,285 - Echvi_2004 0.48 +0.3
2,357,285 - Echvi_2004 0.48 -0.7
2,357,285 - Echvi_2004 0.48 +0.9
2,357,285 - Echvi_2004 0.48 -1.2
2,357,288 + Echvi_2004 0.49 +0.2
2,357,288 + Echvi_2004 0.49 -0.1
2,357,357 + Echvi_2004 0.67 -1.0
2,357,409 + Echvi_2004 0.81 -0.3
2,357,410 - Echvi_2004 0.81 -0.5
2,357,471 + -0.0
2,357,472 - -0.7
2,357,474 - +5.3
2,357,474 - -0.8
2,357,489 + +0.7
2,357,528 + +0.3
2,357,592 + Echvi_2005 0.12 -0.5
2,357,671 + Echvi_2005 0.76 +0.2
2,357,672 - Echvi_2005 0.77 -0.4
2,357,681 + Echvi_2005 0.85 +0.3
2,357,681 + Echvi_2005 0.85 -0.1
2,357,682 - Echvi_2005 0.85 -0.1
2,357,682 - Echvi_2005 0.85 -0.4
2,357,686 - Echvi_2005 0.89 -0.2
2,357,724 + -0.4
2,357,786 + -0.4
2,357,804 + -0.2
2,357,804 + -1.4
2,357,907 + Echvi_2006 0.16 +1.7
2,357,908 - Echvi_2006 0.16 -0.4
2,357,936 + Echvi_2006 0.20 -0.5
2,357,963 + Echvi_2006 0.23 +0.5

Or see this region's nucleotide sequence