Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21170 and CA264_21175 are separated by 184 nucleotides CA264_21175 and CA264_21180 are separated by 181 nucleotides
CA264_21170: CA264_21170 - hypothetical protein, at 100,942 to 101,574
_21170
CA264_21175: CA264_21175 - STAS/SEC14 domain-containing protein, at 101,759 to 102,115
_21175
CA264_21180: CA264_21180 - ribulose-phosphate 3-epimerase, at 102,297 to 102,953
_21180
Position (kb)
101
102
103 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 100.764 kb on + strand at 100.767 kb on + strand at 100.768 kb on - strand at 100.830 kb on - strand at 100.838 kb on + strand at 100.839 kb on - strand at 100.894 kb on + strand at 100.894 kb on + strand at 100.895 kb on - strand at 100.895 kb on - strand at 100.895 kb on - strand at 100.895 kb on - strand at 100.924 kb on + strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.941 kb on + strand at 100.957 kb on + strand at 100.986 kb on - strand at 100.995 kb on + strand at 101.019 kb on - strand, within CA264_21170 at 101.067 kb on - strand, within CA264_21170 at 101.074 kb on + strand, within CA264_21170 at 101.075 kb on - strand, within CA264_21170 at 101.075 kb on - strand, within CA264_21170 at 101.078 kb on + strand, within CA264_21170 at 101.127 kb on - strand, within CA264_21170 at 101.260 kb on + strand, within CA264_21170 at 101.261 kb on - strand, within CA264_21170 at 101.275 kb on - strand, within CA264_21170 at 101.321 kb on + strand, within CA264_21170 at 101.379 kb on - strand, within CA264_21170 at 101.417 kb on + strand, within CA264_21170 at 101.418 kb on - strand, within CA264_21170 at 101.418 kb on - strand, within CA264_21170 at 101.475 kb on + strand, within CA264_21170 at 101.475 kb on + strand, within CA264_21170 at 101.476 kb on - strand, within CA264_21170 at 101.506 kb on + strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.507 kb on - strand, within CA264_21170 at 101.509 kb on + strand, within CA264_21170 at 101.509 kb on + strand, within CA264_21170 at 101.510 kb on - strand, within CA264_21170 at 101.510 kb on - strand, within CA264_21170 at 101.514 kb on + strand at 101.515 kb on - strand at 101.515 kb on - strand at 101.565 kb on + strand at 101.565 kb on + strand at 101.575 kb on + strand at 101.592 kb on + strand at 101.592 kb on + strand at 101.592 kb on + strand at 101.592 kb on + strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.593 kb on - strand at 101.615 kb on + strand at 101.668 kb on + strand at 101.668 kb on + strand at 101.669 kb on - strand at 101.669 kb on - strand at 101.669 kb on - strand at 101.669 kb on - strand at 101.672 kb on + strand at 101.713 kb on + strand at 101.713 kb on + strand at 101.714 kb on - strand at 101.714 kb on - strand at 101.844 kb on + strand, within CA264_21175 at 101.865 kb on + strand, within CA264_21175 at 101.866 kb on - strand, within CA264_21175 at 101.866 kb on - strand, within CA264_21175 at 101.869 kb on - strand, within CA264_21175 at 101.894 kb on + strand, within CA264_21175 at 101.895 kb on - strand, within CA264_21175 at 102.047 kb on - strand, within CA264_21175 at 102.065 kb on + strand, within CA264_21175 at 102.154 kb on + strand at 102.154 kb on + strand at 102.155 kb on - strand at 102.173 kb on - strand at 102.175 kb on - strand at 102.180 kb on - strand at 102.408 kb on + strand, within CA264_21180 at 102.409 kb on - strand, within CA264_21180 at 102.467 kb on + strand, within CA264_21180 at 102.467 kb on + strand, within CA264_21180 at 102.467 kb on + strand, within CA264_21180 at 102.541 kb on - strand, within CA264_21180 at 102.541 kb on - strand, within CA264_21180 at 102.580 kb on + strand, within CA264_21180 at 102.636 kb on + strand, within CA264_21180 at 102.646 kb on - strand, within CA264_21180 at 102.654 kb on + strand, within CA264_21180 at 102.705 kb on + strand, within CA264_21180 at 102.706 kb on - strand, within CA264_21180 at 102.706 kb on - strand, within CA264_21180 at 102.780 kb on - strand, within CA264_21180 at 102.838 kb on - strand, within CA264_21180 at 102.855 kb on + strand, within CA264_21180 at 102.856 kb on - strand, within CA264_21180 at 102.856 kb on - strand, within CA264_21180 at 102.875 kb on + strand, within CA264_21180 at 102.876 kb on - strand, within CA264_21180 at 102.876 kb on - strand, within CA264_21180 at 102.931 kb on - strand at 102.931 kb on - strand at 102.956 kb on + strand at 103.061 kb on + strand at 103.062 kb on - strand at 103.098 kb on + strand at 103.098 kb on + strand at 103.099 kb on - strand at 103.105 kb on + strand at 103.114 kb on - strand at 103.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 100,764 + +0.6 100,767 + +0.2 100,768 - +0.2 100,830 - -0.2 100,838 + +0.0 100,839 - -0.1 100,894 + -1.4 100,894 + +0.0 100,895 - -1.1 100,895 - -1.5 100,895 - -1.3 100,895 - +0.3 100,924 + -1.8 100,933 - -0.3 100,933 - -0.5 100,933 - +1.5 100,941 + +0.7 100,957 + -0.6 100,986 - +0.5 100,995 + -0.8 101,019 - CA264_21170 0.12 +1.7 101,067 - CA264_21170 0.20 +0.5 101,074 + CA264_21170 0.21 -1.5 101,075 - CA264_21170 0.21 +0.5 101,075 - CA264_21170 0.21 -1.5 101,078 + CA264_21170 0.21 +0.1 101,127 - CA264_21170 0.29 -0.4 101,260 + CA264_21170 0.50 +0.1 101,261 - CA264_21170 0.50 -0.6 101,275 - CA264_21170 0.53 -0.3 101,321 + CA264_21170 0.60 -0.1 101,379 - CA264_21170 0.69 +0.9 101,417 + CA264_21170 0.75 -0.1 101,418 - CA264_21170 0.75 -1.1 101,418 - CA264_21170 0.75 +0.5 101,475 + CA264_21170 0.84 +0.5 101,475 + CA264_21170 0.84 +0.3 101,476 - CA264_21170 0.84 +0.0 101,506 + CA264_21170 0.89 +0.3 101,507 - CA264_21170 0.89 +0.4 101,507 - CA264_21170 0.89 -0.1 101,507 - CA264_21170 0.89 -0.3 101,507 - CA264_21170 0.89 -0.7 101,509 + CA264_21170 0.90 -1.0 101,509 + CA264_21170 0.90 +0.8 101,510 - CA264_21170 0.90 -1.5 101,510 - CA264_21170 0.90 -0.2 101,514 + +1.7 101,515 - +0.7 101,515 - -0.6 101,565 + -0.3 101,565 + -0.8 101,575 + -0.0 101,592 + -0.7 101,592 + -0.5 101,592 + +0.2 101,592 + +0.2 101,593 - +0.5 101,593 - +0.6 101,593 - +0.1 101,593 - -0.8 101,593 - -1.4 101,615 + -0.3 101,668 + -1.4 101,668 + -0.7 101,669 - +1.0 101,669 - -1.5 101,669 - +0.8 101,669 - -0.2 101,672 + -1.0 101,713 + -0.8 101,713 + +0.2 101,714 - -1.0 101,714 - +0.4 101,844 + CA264_21175 0.24 -0.9 101,865 + CA264_21175 0.30 +0.7 101,866 - CA264_21175 0.30 -0.7 101,866 - CA264_21175 0.30 -0.3 101,869 - CA264_21175 0.31 -0.1 101,894 + CA264_21175 0.38 -0.8 101,895 - CA264_21175 0.38 +0.0 102,047 - CA264_21175 0.81 +1.9 102,065 + CA264_21175 0.86 -0.1 102,154 + -0.0 102,154 + +0.7 102,155 - -0.3 102,173 - -0.3 102,175 - +0.4 102,180 - +0.5 102,408 + CA264_21180 0.17 -0.8 102,409 - CA264_21180 0.17 +1.4 102,467 + CA264_21180 0.26 -0.3 102,467 + CA264_21180 0.26 +0.1 102,467 + CA264_21180 0.26 +0.4 102,541 - CA264_21180 0.37 +0.5 102,541 - CA264_21180 0.37 -1.1 102,580 + CA264_21180 0.43 +0.4 102,636 + CA264_21180 0.52 -0.4 102,646 - CA264_21180 0.53 -0.4 102,654 + CA264_21180 0.54 -0.0 102,705 + CA264_21180 0.62 -0.3 102,706 - CA264_21180 0.62 +0.7 102,706 - CA264_21180 0.62 +0.0 102,780 - CA264_21180 0.74 +0.1 102,838 - CA264_21180 0.82 +0.1 102,855 + CA264_21180 0.85 +0.5 102,856 - CA264_21180 0.85 +0.7 102,856 - CA264_21180 0.85 -0.7 102,875 + CA264_21180 0.88 -0.2 102,876 - CA264_21180 0.88 -0.5 102,876 - CA264_21180 0.88 -1.2 102,931 - +0.3 102,931 - -0.3 102,956 + +0.1 103,061 + +0.1 103,062 - +0.1 103,098 + +0.8 103,098 + +0.4 103,099 - -0.2 103,105 + -0.7 103,114 - +1.3 103,114 - -0.8
Or see this region's nucleotide sequence