Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10940 and CA264_10945 are separated by 109 nucleotides CA264_10945 and CA264_10950 overlap by 1 nucleotides CA264_10950 and CA264_10955 are separated by 103 nucleotides CA264_10955 and CA264_10960 are separated by 116 nucleotides
CA264_10940: CA264_10940 - phenylacetate-CoA oxygenase subunit PaaA, at 2,524,546 to 2,525,532
_10940
CA264_10945: CA264_10945 - phenylacetic acid degradation b, at 2,525,642 to 2,526,277
_10945
CA264_10950: CA264_10950 - phenylacetate-CoA oxygenase subunit PaaI, at 2,526,277 to 2,527,032
_10950
CA264_10955: CA264_10955 - phenylacetate-CoA oxygenase subunit PaaJ, at 2,527,136 to 2,527,621
_10955
CA264_10960: CA264_10960 - copper homeostasis protein, at 2,527,738 to 2,528,169
_10960
Position (kb)
2526
2527
2528 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2525.290 kb on + strand, within CA264_10940 at 2525.290 kb on + strand, within CA264_10940 at 2525.290 kb on + strand, within CA264_10940 at 2525.291 kb on - strand, within CA264_10940 at 2525.291 kb on - strand, within CA264_10940 at 2525.291 kb on - strand, within CA264_10940 at 2525.291 kb on - strand, within CA264_10940 at 2525.372 kb on - strand, within CA264_10940 at 2525.540 kb on + strand at 2525.561 kb on + strand at 2525.596 kb on - strand at 2525.629 kb on + strand at 2525.634 kb on - strand at 2525.744 kb on + strand, within CA264_10945 at 2525.744 kb on + strand, within CA264_10945 at 2525.782 kb on + strand, within CA264_10945 at 2525.782 kb on + strand, within CA264_10945 at 2525.783 kb on - strand, within CA264_10945 at 2525.786 kb on + strand, within CA264_10945 at 2525.786 kb on + strand, within CA264_10945 at 2525.786 kb on + strand, within CA264_10945 at 2525.786 kb on + strand, within CA264_10945 at 2525.787 kb on - strand, within CA264_10945 at 2525.787 kb on - strand, within CA264_10945 at 2525.937 kb on - strand, within CA264_10945 at 2525.937 kb on - strand, within CA264_10945 at 2526.028 kb on + strand, within CA264_10945 at 2526.029 kb on - strand, within CA264_10945 at 2526.060 kb on - strand, within CA264_10945 at 2526.130 kb on - strand, within CA264_10945 at 2526.218 kb on + strand at 2526.218 kb on + strand at 2526.218 kb on + strand at 2526.218 kb on + strand at 2526.218 kb on + strand at 2526.219 kb on - strand at 2526.220 kb on + strand at 2526.220 kb on + strand at 2526.247 kb on + strand at 2526.275 kb on + strand at 2526.307 kb on + strand at 2526.330 kb on + strand at 2526.331 kb on - strand at 2526.331 kb on - strand at 2526.332 kb on + strand at 2526.439 kb on + strand, within CA264_10950 at 2526.439 kb on + strand, within CA264_10950 at 2526.528 kb on - strand, within CA264_10950 at 2526.625 kb on + strand, within CA264_10950 at 2526.668 kb on + strand, within CA264_10950 at 2526.669 kb on - strand, within CA264_10950 at 2526.674 kb on - strand, within CA264_10950 at 2526.734 kb on + strand, within CA264_10950 at 2526.833 kb on - strand, within CA264_10950 at 2527.077 kb on + strand at 2527.078 kb on - strand at 2527.086 kb on + strand at 2527.087 kb on - strand at 2527.111 kb on + strand at 2527.112 kb on - strand at 2527.112 kb on - strand at 2527.117 kb on + strand at 2527.117 kb on + strand at 2527.118 kb on - strand at 2527.130 kb on - strand at 2527.132 kb on + strand at 2527.132 kb on + strand at 2527.133 kb on - strand at 2527.158 kb on + strand at 2527.159 kb on - strand at 2527.159 kb on - strand at 2527.308 kb on - strand, within CA264_10955 at 2527.324 kb on - strand, within CA264_10955 at 2527.461 kb on - strand, within CA264_10955 at 2527.493 kb on + strand, within CA264_10955 at 2527.574 kb on + strand at 2527.620 kb on - strand at 2527.623 kb on + strand at 2527.623 kb on + strand at 2527.632 kb on - strand at 2527.632 kb on - strand at 2527.640 kb on - strand at 2527.657 kb on + strand at 2527.658 kb on - strand at 2527.664 kb on + strand at 2527.665 kb on - strand at 2527.682 kb on + strand at 2527.683 kb on - strand at 2527.683 kb on - strand at 2527.689 kb on - strand at 2527.740 kb on - strand at 2527.740 kb on - strand at 2527.873 kb on - strand, within CA264_10960 at 2527.885 kb on + strand, within CA264_10960 at 2527.885 kb on + strand, within CA264_10960 at 2527.886 kb on - strand, within CA264_10960 at 2527.937 kb on - strand, within CA264_10960 at 2527.937 kb on - strand, within CA264_10960 at 2527.937 kb on - strand, within CA264_10960 at 2527.956 kb on + strand, within CA264_10960 at 2527.956 kb on + strand, within CA264_10960 at 2527.956 kb on + strand, within CA264_10960 at 2527.956 kb on + strand, within CA264_10960 at 2527.982 kb on + strand, within CA264_10960 at 2527.982 kb on + strand, within CA264_10960 at 2527.986 kb on + strand, within CA264_10960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 2,525,290 + CA264_10940 0.75 -0.7 2,525,290 + CA264_10940 0.75 +0.1 2,525,290 + CA264_10940 0.75 +0.3 2,525,291 - CA264_10940 0.75 +0.6 2,525,291 - CA264_10940 0.75 +0.7 2,525,291 - CA264_10940 0.75 +0.1 2,525,291 - CA264_10940 0.75 -0.3 2,525,372 - CA264_10940 0.84 +0.5 2,525,540 + -0.2 2,525,561 + -1.6 2,525,596 - +0.6 2,525,629 + -0.2 2,525,634 - -0.1 2,525,744 + CA264_10945 0.16 +0.1 2,525,744 + CA264_10945 0.16 -1.3 2,525,782 + CA264_10945 0.22 +0.5 2,525,782 + CA264_10945 0.22 -1.8 2,525,783 - CA264_10945 0.22 +1.1 2,525,786 + CA264_10945 0.23 -0.8 2,525,786 + CA264_10945 0.23 -0.4 2,525,786 + CA264_10945 0.23 -0.3 2,525,786 + CA264_10945 0.23 -0.1 2,525,787 - CA264_10945 0.23 -0.7 2,525,787 - CA264_10945 0.23 -0.5 2,525,937 - CA264_10945 0.46 +0.6 2,525,937 - CA264_10945 0.46 -0.1 2,526,028 + CA264_10945 0.61 -0.4 2,526,029 - CA264_10945 0.61 -0.0 2,526,060 - CA264_10945 0.66 +0.6 2,526,130 - CA264_10945 0.77 +0.4 2,526,218 + -0.0 2,526,218 + -0.2 2,526,218 + -0.5 2,526,218 + +1.2 2,526,218 + -0.2 2,526,219 - -0.0 2,526,220 + +0.1 2,526,220 + -0.1 2,526,247 + -0.4 2,526,275 + -0.3 2,526,307 + -1.1 2,526,330 + -0.5 2,526,331 - +0.6 2,526,331 - -0.5 2,526,332 + -0.1 2,526,439 + CA264_10950 0.21 -0.1 2,526,439 + CA264_10950 0.21 -2.4 2,526,528 - CA264_10950 0.33 +0.0 2,526,625 + CA264_10950 0.46 +0.2 2,526,668 + CA264_10950 0.52 +0.7 2,526,669 - CA264_10950 0.52 +1.0 2,526,674 - CA264_10950 0.53 +0.1 2,526,734 + CA264_10950 0.60 +0.0 2,526,833 - CA264_10950 0.74 -0.1 2,527,077 + -0.8 2,527,078 - -0.1 2,527,086 + +0.2 2,527,087 - -0.2 2,527,111 + -0.5 2,527,112 - -0.2 2,527,112 - +0.4 2,527,117 + -1.3 2,527,117 + +0.3 2,527,118 - -0.3 2,527,130 - +0.2 2,527,132 + +0.6 2,527,132 + +1.9 2,527,133 - -0.8 2,527,158 + -0.4 2,527,159 - -0.3 2,527,159 - +0.6 2,527,308 - CA264_10955 0.35 +0.5 2,527,324 - CA264_10955 0.39 +0.7 2,527,461 - CA264_10955 0.67 +0.4 2,527,493 + CA264_10955 0.73 +0.5 2,527,574 + -1.1 2,527,620 - -0.2 2,527,623 + -0.4 2,527,623 + -0.5 2,527,632 - +0.4 2,527,632 - +0.6 2,527,640 - -0.1 2,527,657 + +0.7 2,527,658 - -0.2 2,527,664 + -0.1 2,527,665 - -0.7 2,527,682 + +0.2 2,527,683 - +0.4 2,527,683 - -0.3 2,527,689 - -0.1 2,527,740 - -0.7 2,527,740 - +1.5 2,527,873 - CA264_10960 0.31 -0.3 2,527,885 + CA264_10960 0.34 -0.8 2,527,885 + CA264_10960 0.34 +0.8 2,527,886 - CA264_10960 0.34 -1.8 2,527,937 - CA264_10960 0.46 +1.1 2,527,937 - CA264_10960 0.46 -0.2 2,527,937 - CA264_10960 0.46 +0.6 2,527,956 + CA264_10960 0.50 -0.1 2,527,956 + CA264_10960 0.50 +0.7 2,527,956 + CA264_10960 0.50 -0.4 2,527,956 + CA264_10960 0.50 -0.8 2,527,982 + CA264_10960 0.56 -0.3 2,527,982 + CA264_10960 0.56 -0.1 2,527,986 + CA264_10960 0.57 -0.2
Or see this region's nucleotide sequence