Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09860 and CA264_09865 are separated by 66 nucleotides CA264_09865 and CA264_09870 are separated by 291 nucleotides
CA264_09860: CA264_09860 - hypothetical protein, at 2,293,548 to 2,294,564
_09860
CA264_09865: CA264_09865 - TonB dependent receptor, at 2,294,631 to 2,297,072
_09865
CA264_09870: CA264_09870 - hypothetical protein, at 2,297,364 to 2,298,143
_09870
Position (kb)
2294
2295
2296
2297
2298 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2293.666 kb on - strand, within CA264_09860 at 2293.688 kb on + strand, within CA264_09860 at 2293.689 kb on - strand, within CA264_09860 at 2293.720 kb on - strand, within CA264_09860 at 2293.730 kb on - strand, within CA264_09860 at 2293.730 kb on - strand, within CA264_09860 at 2293.730 kb on - strand, within CA264_09860 at 2293.828 kb on + strand, within CA264_09860 at 2293.919 kb on + strand, within CA264_09860 at 2293.920 kb on - strand, within CA264_09860 at 2293.928 kb on + strand, within CA264_09860 at 2293.929 kb on - strand, within CA264_09860 at 2293.929 kb on - strand, within CA264_09860 at 2293.932 kb on - strand, within CA264_09860 at 2293.932 kb on - strand, within CA264_09860 at 2293.933 kb on + strand, within CA264_09860 at 2293.933 kb on + strand, within CA264_09860 at 2293.934 kb on - strand, within CA264_09860 at 2293.955 kb on + strand, within CA264_09860 at 2293.955 kb on + strand, within CA264_09860 at 2293.961 kb on - strand, within CA264_09860 at 2293.961 kb on - strand, within CA264_09860 at 2293.976 kb on + strand, within CA264_09860 at 2293.991 kb on + strand, within CA264_09860 at 2293.992 kb on - strand, within CA264_09860 at 2294.018 kb on - strand, within CA264_09860 at 2294.088 kb on + strand, within CA264_09860 at 2294.089 kb on - strand, within CA264_09860 at 2294.106 kb on + strand, within CA264_09860 at 2294.106 kb on + strand, within CA264_09860 at 2294.159 kb on - strand, within CA264_09860 at 2294.213 kb on - strand, within CA264_09860 at 2294.227 kb on + strand, within CA264_09860 at 2294.227 kb on + strand, within CA264_09860 at 2294.227 kb on + strand, within CA264_09860 at 2294.240 kb on + strand, within CA264_09860 at 2294.251 kb on + strand, within CA264_09860 at 2294.285 kb on - strand, within CA264_09860 at 2294.285 kb on - strand, within CA264_09860 at 2294.304 kb on + strand, within CA264_09860 at 2294.305 kb on - strand, within CA264_09860 at 2294.353 kb on - strand, within CA264_09860 at 2294.353 kb on - strand, within CA264_09860 at 2294.499 kb on - strand at 2294.503 kb on + strand at 2294.504 kb on - strand at 2294.509 kb on + strand at 2294.509 kb on + strand at 2294.510 kb on - strand at 2294.538 kb on - strand at 2294.538 kb on - strand at 2294.542 kb on - strand at 2294.553 kb on + strand at 2294.568 kb on - strand at 2294.568 kb on - strand at 2294.605 kb on + strand at 2294.606 kb on - strand at 2294.623 kb on - strand at 2294.625 kb on + strand at 2294.632 kb on + strand at 2294.633 kb on - strand at 2295.199 kb on + strand, within CA264_09865 at 2295.250 kb on + strand, within CA264_09865 at 2295.385 kb on + strand, within CA264_09865 at 2295.476 kb on + strand, within CA264_09865 at 2295.485 kb on + strand, within CA264_09865 at 2295.485 kb on + strand, within CA264_09865 at 2295.776 kb on + strand, within CA264_09865 at 2295.878 kb on + strand, within CA264_09865 at 2295.878 kb on + strand, within CA264_09865 at 2295.943 kb on + strand, within CA264_09865 at 2295.959 kb on + strand, within CA264_09865 at 2295.959 kb on + strand, within CA264_09865 at 2295.990 kb on + strand, within CA264_09865 at 2296.079 kb on + strand, within CA264_09865 at 2296.115 kb on + strand, within CA264_09865 at 2296.117 kb on + strand, within CA264_09865 at 2296.234 kb on + strand, within CA264_09865 at 2296.250 kb on + strand, within CA264_09865 at 2296.502 kb on + strand, within CA264_09865 at 2296.502 kb on + strand, within CA264_09865 at 2296.658 kb on - strand, within CA264_09865 at 2296.789 kb on + strand, within CA264_09865 at 2296.789 kb on + strand, within CA264_09865 at 2296.854 kb on - strand at 2296.858 kb on + strand at 2297.096 kb on + strand at 2297.151 kb on - strand at 2297.151 kb on - strand at 2297.184 kb on + strand at 2297.208 kb on + strand at 2297.217 kb on + strand at 2297.217 kb on + strand at 2297.218 kb on - strand at 2297.218 kb on - strand at 2297.222 kb on + strand at 2297.223 kb on - strand at 2297.255 kb on + strand at 2297.256 kb on - strand at 2297.257 kb on + strand at 2297.258 kb on - strand at 2297.283 kb on - strand at 2297.283 kb on - strand at 2297.284 kb on + strand at 2297.285 kb on - strand at 2297.290 kb on + strand at 2297.386 kb on - strand at 2297.388 kb on + strand at 2297.481 kb on + strand, within CA264_09870 at 2297.521 kb on + strand, within CA264_09870 at 2297.522 kb on - strand, within CA264_09870 at 2297.522 kb on - strand, within CA264_09870 at 2297.542 kb on + strand, within CA264_09870 at 2297.542 kb on + strand, within CA264_09870 at 2297.542 kb on + strand, within CA264_09870 at 2297.698 kb on - strand, within CA264_09870 at 2297.698 kb on - strand, within CA264_09870 at 2297.822 kb on - strand, within CA264_09870 at 2297.830 kb on - strand, within CA264_09870 at 2297.834 kb on - strand, within CA264_09870 at 2297.876 kb on + strand, within CA264_09870 at 2297.876 kb on + strand, within CA264_09870 at 2297.877 kb on - strand, within CA264_09870 at 2297.880 kb on + strand, within CA264_09870 at 2297.927 kb on - strand, within CA264_09870 at 2298.039 kb on + strand, within CA264_09870 at 2298.039 kb on + strand, within CA264_09870 at 2298.039 kb on + strand, within CA264_09870 at 2298.040 kb on - strand, within CA264_09870 at 2298.040 kb on - strand, within CA264_09870 at 2298.040 kb on - strand, within CA264_09870
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 2,293,666 - CA264_09860 0.12 +0.3 2,293,688 + CA264_09860 0.14 +0.5 2,293,689 - CA264_09860 0.14 -0.5 2,293,720 - CA264_09860 0.17 +0.3 2,293,730 - CA264_09860 0.18 +0.0 2,293,730 - CA264_09860 0.18 +0.6 2,293,730 - CA264_09860 0.18 -0.2 2,293,828 + CA264_09860 0.28 -0.2 2,293,919 + CA264_09860 0.36 -0.6 2,293,920 - CA264_09860 0.37 +0.8 2,293,928 + CA264_09860 0.37 +0.2 2,293,929 - CA264_09860 0.37 -0.2 2,293,929 - CA264_09860 0.37 -0.3 2,293,932 - CA264_09860 0.38 +0.7 2,293,932 - CA264_09860 0.38 +1.4 2,293,933 + CA264_09860 0.38 +0.1 2,293,933 + CA264_09860 0.38 -2.0 2,293,934 - CA264_09860 0.38 -0.2 2,293,955 + CA264_09860 0.40 +0.2 2,293,955 + CA264_09860 0.40 +1.3 2,293,961 - CA264_09860 0.41 -0.3 2,293,961 - CA264_09860 0.41 +0.3 2,293,976 + CA264_09860 0.42 -0.2 2,293,991 + CA264_09860 0.44 +0.3 2,293,992 - CA264_09860 0.44 +1.0 2,294,018 - CA264_09860 0.46 +0.9 2,294,088 + CA264_09860 0.53 +0.2 2,294,089 - CA264_09860 0.53 +0.1 2,294,106 + CA264_09860 0.55 +0.3 2,294,106 + CA264_09860 0.55 -0.5 2,294,159 - CA264_09860 0.60 +0.4 2,294,213 - CA264_09860 0.65 +0.4 2,294,227 + CA264_09860 0.67 -0.3 2,294,227 + CA264_09860 0.67 +0.6 2,294,227 + CA264_09860 0.67 -1.0 2,294,240 + CA264_09860 0.68 +0.8 2,294,251 + CA264_09860 0.69 -0.5 2,294,285 - CA264_09860 0.72 -0.8 2,294,285 - CA264_09860 0.72 +0.7 2,294,304 + CA264_09860 0.74 +0.1 2,294,305 - CA264_09860 0.74 +0.1 2,294,353 - CA264_09860 0.79 +0.3 2,294,353 - CA264_09860 0.79 -0.1 2,294,499 - +1.1 2,294,503 + +0.4 2,294,504 - -0.3 2,294,509 + -0.0 2,294,509 + -0.0 2,294,510 - -1.1 2,294,538 - +0.6 2,294,538 - -0.1 2,294,542 - -0.3 2,294,553 + +0.3 2,294,568 - +0.7 2,294,568 - -0.0 2,294,605 + -0.5 2,294,606 - -0.1 2,294,623 - -0.1 2,294,625 + -1.1 2,294,632 + -0.3 2,294,633 - +0.6 2,295,199 + CA264_09865 0.23 -2.5 2,295,250 + CA264_09865 0.25 -1.6 2,295,385 + CA264_09865 0.31 -1.6 2,295,476 + CA264_09865 0.35 +0.1 2,295,485 + CA264_09865 0.35 -0.0 2,295,485 + CA264_09865 0.35 -1.8 2,295,776 + CA264_09865 0.47 -1.3 2,295,878 + CA264_09865 0.51 +0.5 2,295,878 + CA264_09865 0.51 -1.2 2,295,943 + CA264_09865 0.54 -0.2 2,295,959 + CA264_09865 0.54 -2.2 2,295,959 + CA264_09865 0.54 -0.5 2,295,990 + CA264_09865 0.56 -0.1 2,296,079 + CA264_09865 0.59 -2.8 2,296,115 + CA264_09865 0.61 -1.9 2,296,117 + CA264_09865 0.61 +0.1 2,296,234 + CA264_09865 0.66 -0.6 2,296,250 + CA264_09865 0.66 +1.4 2,296,502 + CA264_09865 0.77 -1.0 2,296,502 + CA264_09865 0.77 -0.5 2,296,658 - CA264_09865 0.83 -1.2 2,296,789 + CA264_09865 0.88 -1.4 2,296,789 + CA264_09865 0.88 +1.5 2,296,854 - -2.7 2,296,858 + -0.6 2,297,096 + -0.8 2,297,151 - -0.2 2,297,151 - -0.0 2,297,184 + -0.3 2,297,208 + -0.0 2,297,217 + -0.6 2,297,217 + -0.1 2,297,218 - +0.3 2,297,218 - +0.7 2,297,222 + +0.5 2,297,223 - +0.1 2,297,255 + -1.0 2,297,256 - -1.9 2,297,257 + -1.2 2,297,258 - -0.0 2,297,283 - -0.3 2,297,283 - -0.7 2,297,284 + -0.7 2,297,285 - -1.0 2,297,290 + -0.7 2,297,386 - +0.5 2,297,388 + -0.5 2,297,481 + CA264_09870 0.15 +0.0 2,297,521 + CA264_09870 0.20 +1.5 2,297,522 - CA264_09870 0.20 -0.3 2,297,522 - CA264_09870 0.20 -0.7 2,297,542 + CA264_09870 0.23 -0.5 2,297,542 + CA264_09870 0.23 +0.6 2,297,542 + CA264_09870 0.23 -1.1 2,297,698 - CA264_09870 0.43 +1.0 2,297,698 - CA264_09870 0.43 -0.6 2,297,822 - CA264_09870 0.59 -0.9 2,297,830 - CA264_09870 0.60 +0.9 2,297,834 - CA264_09870 0.60 +0.5 2,297,876 + CA264_09870 0.66 -1.3 2,297,876 + CA264_09870 0.66 -0.3 2,297,877 - CA264_09870 0.66 +0.1 2,297,880 + CA264_09870 0.66 -0.5 2,297,927 - CA264_09870 0.72 -0.3 2,298,039 + CA264_09870 0.87 -0.1 2,298,039 + CA264_09870 0.87 +0.4 2,298,039 + CA264_09870 0.87 +0.2 2,298,040 - CA264_09870 0.87 +0.2 2,298,040 - CA264_09870 0.87 -0.3 2,298,040 - CA264_09870 0.87 -0.2
Or see this region's nucleotide sequence