Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09165

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09160 and CA264_09165 are separated by 142 nucleotidesCA264_09165 and CA264_09170 are separated by 168 nucleotidesCA264_09170 and CA264_09175 are separated by 1 nucleotides CA264_09160: CA264_09160 - MBL fold metallo-hydrolase, at 2,147,195 to 2,148,607 _09160 CA264_09165: CA264_09165 - AraC family transcriptional regulator, at 2,148,750 to 2,149,328 _09165 CA264_09170: CA264_09170 - hypothetical protein, at 2,149,497 to 2,149,922 _09170 CA264_09175: CA264_09175 - nuclease PIN, at 2,149,924 to 2,150,787 _09175 Position (kb) 2148 2149 2150Strain fitness (log2 ratio) -3 -2 -1 0 1at 2147.814 kb on - strand, within CA264_09160at 2147.872 kb on - strand, within CA264_09160at 2147.938 kb on + strand, within CA264_09160at 2147.938 kb on + strand, within CA264_09160at 2147.938 kb on + strand, within CA264_09160at 2147.938 kb on + strand, within CA264_09160at 2147.939 kb on - strand, within CA264_09160at 2147.939 kb on - strand, within CA264_09160at 2147.939 kb on - strand, within CA264_09160at 2147.958 kb on + strand, within CA264_09160at 2148.282 kb on + strand, within CA264_09160at 2148.283 kb on - strand, within CA264_09160at 2148.337 kb on - strand, within CA264_09160at 2148.337 kb on - strand, within CA264_09160at 2148.449 kb on + strand, within CA264_09160at 2148.450 kb on - strand, within CA264_09160at 2148.453 kb on + strand, within CA264_09160at 2148.493 kb on + strandat 2148.493 kb on + strandat 2148.494 kb on - strandat 2148.494 kb on - strandat 2148.526 kb on - strandat 2148.543 kb on - strandat 2148.543 kb on - strandat 2148.562 kb on + strandat 2148.565 kb on + strandat 2148.606 kb on - strandat 2148.624 kb on + strandat 2148.625 kb on - strandat 2148.625 kb on - strandat 2148.633 kb on + strandat 2148.647 kb on + strandat 2148.670 kb on - strandat 2148.670 kb on - strandat 2148.670 kb on - strandat 2148.674 kb on + strandat 2148.674 kb on + strandat 2148.720 kb on + strandat 2148.722 kb on + strandat 2148.722 kb on + strandat 2148.722 kb on + strandat 2148.723 kb on - strandat 2148.749 kb on - strandat 2148.764 kb on + strandat 2148.856 kb on - strand, within CA264_09165at 2148.865 kb on + strand, within CA264_09165at 2148.907 kb on + strand, within CA264_09165at 2148.953 kb on - strand, within CA264_09165at 2148.998 kb on + strand, within CA264_09165at 2148.999 kb on - strand, within CA264_09165at 2149.000 kb on + strand, within CA264_09165at 2149.000 kb on + strand, within CA264_09165at 2149.000 kb on + strand, within CA264_09165at 2149.001 kb on - strand, within CA264_09165at 2149.001 kb on - strand, within CA264_09165at 2149.001 kb on - strand, within CA264_09165at 2149.004 kb on + strand, within CA264_09165at 2149.004 kb on + strand, within CA264_09165at 2149.004 kb on + strand, within CA264_09165at 2149.007 kb on - strand, within CA264_09165at 2149.033 kb on + strand, within CA264_09165at 2149.257 kb on + strand, within CA264_09165at 2149.258 kb on - strand, within CA264_09165at 2149.356 kb on + strandat 2149.356 kb on + strandat 2149.356 kb on + strandat 2149.381 kb on + strandat 2149.412 kb on - strandat 2149.462 kb on - strandat 2149.463 kb on + strandat 2149.463 kb on + strandat 2149.464 kb on - strandat 2149.464 kb on - strandat 2149.464 kb on - strandat 2149.473 kb on + strandat 2149.478 kb on - strandat 2149.492 kb on + strandat 2149.517 kb on + strandat 2149.517 kb on + strandat 2149.517 kb on + strandat 2149.518 kb on - strandat 2149.518 kb on - strandat 2149.550 kb on - strand, within CA264_09170at 2149.633 kb on - strand, within CA264_09170at 2149.637 kb on - strand, within CA264_09170at 2149.637 kb on - strand, within CA264_09170at 2149.637 kb on - strand, within CA264_09170at 2149.650 kb on - strand, within CA264_09170at 2149.802 kb on + strand, within CA264_09170at 2149.806 kb on + strand, within CA264_09170at 2149.806 kb on + strand, within CA264_09170at 2149.806 kb on + strand, within CA264_09170at 2149.807 kb on - strand, within CA264_09170at 2149.807 kb on - strand, within CA264_09170at 2149.807 kb on - strand, within CA264_09170at 2149.825 kb on + strand, within CA264_09170at 2149.828 kb on + strand, within CA264_09170at 2149.828 kb on + strand, within CA264_09170at 2149.828 kb on + strand, within CA264_09170at 2149.885 kb on + strandat 2149.885 kb on + strandat 2149.885 kb on + strandat 2149.921 kb on - strandat 2149.940 kb on - strandat 2149.981 kb on - strandat 2150.092 kb on - strand, within CA264_09175at 2150.153 kb on - strand, within CA264_09175at 2150.192 kb on + strand, within CA264_09175at 2150.233 kb on + strand, within CA264_09175

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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2,147,814 - CA264_09160 0.44 -0.3
2,147,872 - CA264_09160 0.48 -0.5
2,147,938 + CA264_09160 0.53 +0.0
2,147,938 + CA264_09160 0.53 +0.4
2,147,938 + CA264_09160 0.53 -1.0
2,147,938 + CA264_09160 0.53 -0.2
2,147,939 - CA264_09160 0.53 +0.1
2,147,939 - CA264_09160 0.53 +1.2
2,147,939 - CA264_09160 0.53 +0.0
2,147,958 + CA264_09160 0.54 -0.2
2,148,282 + CA264_09160 0.77 +0.1
2,148,283 - CA264_09160 0.77 +0.7
2,148,337 - CA264_09160 0.81 -1.0
2,148,337 - CA264_09160 0.81 +0.9
2,148,449 + CA264_09160 0.89 +0.8
2,148,450 - CA264_09160 0.89 +0.3
2,148,453 + CA264_09160 0.89 -0.2
2,148,493 + +1.6
2,148,493 + -0.4
2,148,494 - +1.4
2,148,494 - -0.3
2,148,526 - +0.7
2,148,543 - -0.5
2,148,543 - -0.9
2,148,562 + +0.6
2,148,565 + -1.1
2,148,606 - -1.4
2,148,624 + +0.1
2,148,625 - -0.7
2,148,625 - -0.6
2,148,633 + +0.3
2,148,647 + -0.3
2,148,670 - -0.6
2,148,670 - -0.2
2,148,670 - -1.4
2,148,674 + +0.3
2,148,674 + +1.6
2,148,720 + +0.1
2,148,722 + +0.2
2,148,722 + +0.3
2,148,722 + -0.1
2,148,723 - +0.4
2,148,749 - -0.5
2,148,764 + +0.9
2,148,856 - CA264_09165 0.18 -0.9
2,148,865 + CA264_09165 0.20 -0.4
2,148,907 + CA264_09165 0.27 -1.6
2,148,953 - CA264_09165 0.35 -0.4
2,148,998 + CA264_09165 0.43 -0.5
2,148,999 - CA264_09165 0.43 -0.8
2,149,000 + CA264_09165 0.43 -0.1
2,149,000 + CA264_09165 0.43 -1.9
2,149,000 + CA264_09165 0.43 +0.2
2,149,001 - CA264_09165 0.43 +0.1
2,149,001 - CA264_09165 0.43 -0.5
2,149,001 - CA264_09165 0.43 -0.6
2,149,004 + CA264_09165 0.44 -0.9
2,149,004 + CA264_09165 0.44 -0.0
2,149,004 + CA264_09165 0.44 -0.7
2,149,007 - CA264_09165 0.44 -0.4
2,149,033 + CA264_09165 0.49 +0.8
2,149,257 + CA264_09165 0.88 +0.0
2,149,258 - CA264_09165 0.88 +0.8
2,149,356 + +0.6
2,149,356 + -0.6
2,149,356 + -2.8
2,149,381 + -0.4
2,149,412 - -0.6
2,149,462 - -0.1
2,149,463 + +0.3
2,149,463 + -0.7
2,149,464 - -1.4
2,149,464 - +0.6
2,149,464 - -0.9
2,149,473 + -1.1
2,149,478 - -0.1
2,149,492 + +1.0
2,149,517 + +0.1
2,149,517 + -0.4
2,149,517 + -0.8
2,149,518 - -0.8
2,149,518 - -0.3
2,149,550 - CA264_09170 0.12 -0.1
2,149,633 - CA264_09170 0.32 -0.4
2,149,637 - CA264_09170 0.33 +0.9
2,149,637 - CA264_09170 0.33 +1.1
2,149,637 - CA264_09170 0.33 -0.2
2,149,650 - CA264_09170 0.36 +0.8
2,149,802 + CA264_09170 0.72 +0.5
2,149,806 + CA264_09170 0.73 -1.5
2,149,806 + CA264_09170 0.73 -0.2
2,149,806 + CA264_09170 0.73 +0.5
2,149,807 - CA264_09170 0.73 +1.1
2,149,807 - CA264_09170 0.73 +1.0
2,149,807 - CA264_09170 0.73 +0.3
2,149,825 + CA264_09170 0.77 +0.7
2,149,828 + CA264_09170 0.78 +0.5
2,149,828 + CA264_09170 0.78 +0.2
2,149,828 + CA264_09170 0.78 +0.1
2,149,885 + -0.1
2,149,885 + +0.9
2,149,885 + -0.1
2,149,921 - -0.1
2,149,940 - +0.3
2,149,981 - -0.9
2,150,092 - CA264_09175 0.19 +0.2
2,150,153 - CA264_09175 0.27 +0.2
2,150,192 + CA264_09175 0.31 +0.9
2,150,233 + CA264_09175 0.36 -0.5

Or see this region's nucleotide sequence