Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09120 and CA264_09125 are separated by 239 nucleotides CA264_09125 and CA264_09130 are separated by 205 nucleotides
CA264_09120: CA264_09120 - galactose-1-epimerase, at 2,135,613 to 2,136,797
_09120
CA264_09125: CA264_09125 - glucose/galactose MFS transporter, at 2,137,037 to 2,138,455
_09125
CA264_09130: CA264_09130 - hypothetical protein, at 2,138,661 to 2,140,955
_09130
Position (kb)
2137
2138
2139 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2136.071 kb on + strand, within CA264_09120 at 2136.141 kb on + strand, within CA264_09120 at 2136.141 kb on + strand, within CA264_09120 at 2136.141 kb on + strand, within CA264_09120 at 2136.142 kb on - strand, within CA264_09120 at 2136.234 kb on + strand, within CA264_09120 at 2136.285 kb on + strand, within CA264_09120 at 2136.291 kb on - strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.356 kb on + strand, within CA264_09120 at 2136.357 kb on - strand, within CA264_09120 at 2136.357 kb on - strand, within CA264_09120 at 2136.403 kb on + strand, within CA264_09120 at 2136.477 kb on + strand, within CA264_09120 at 2136.486 kb on - strand, within CA264_09120 at 2136.537 kb on + strand, within CA264_09120 at 2136.537 kb on + strand, within CA264_09120 at 2136.597 kb on + strand, within CA264_09120 at 2136.648 kb on + strand, within CA264_09120 at 2136.722 kb on + strand at 2136.766 kb on - strand at 2137.009 kb on - strand at 2137.011 kb on + strand at 2137.011 kb on + strand at 2137.019 kb on + strand at 2137.100 kb on - strand at 2137.183 kb on - strand, within CA264_09125 at 2137.231 kb on - strand, within CA264_09125 at 2137.257 kb on - strand, within CA264_09125 at 2137.277 kb on + strand, within CA264_09125 at 2137.278 kb on - strand, within CA264_09125 at 2137.327 kb on + strand, within CA264_09125 at 2137.328 kb on - strand, within CA264_09125 at 2137.402 kb on + strand, within CA264_09125 at 2137.402 kb on + strand, within CA264_09125 at 2137.402 kb on + strand, within CA264_09125 at 2137.403 kb on - strand, within CA264_09125 at 2137.403 kb on - strand, within CA264_09125 at 2137.406 kb on + strand, within CA264_09125 at 2137.407 kb on - strand, within CA264_09125 at 2137.433 kb on - strand, within CA264_09125 at 2137.433 kb on - strand, within CA264_09125 at 2137.434 kb on + strand, within CA264_09125 at 2137.478 kb on + strand, within CA264_09125 at 2137.479 kb on - strand, within CA264_09125 at 2137.479 kb on - strand, within CA264_09125 at 2137.482 kb on + strand, within CA264_09125 at 2137.483 kb on - strand, within CA264_09125 at 2137.553 kb on - strand, within CA264_09125 at 2137.640 kb on + strand, within CA264_09125 at 2137.684 kb on + strand, within CA264_09125 at 2137.780 kb on + strand, within CA264_09125 at 2137.780 kb on + strand, within CA264_09125 at 2137.967 kb on - strand, within CA264_09125 at 2137.967 kb on - strand, within CA264_09125 at 2137.967 kb on - strand, within CA264_09125 at 2137.970 kb on + strand, within CA264_09125 at 2137.970 kb on + strand, within CA264_09125 at 2138.012 kb on - strand, within CA264_09125 at 2138.030 kb on - strand, within CA264_09125 at 2138.080 kb on - strand, within CA264_09125 at 2138.080 kb on - strand, within CA264_09125 at 2138.099 kb on - strand, within CA264_09125 at 2138.155 kb on + strand, within CA264_09125 at 2138.317 kb on + strand at 2138.318 kb on - strand at 2138.402 kb on + strand at 2138.402 kb on + strand at 2138.407 kb on + strand at 2138.408 kb on - strand at 2138.408 kb on - strand at 2138.408 kb on - strand at 2138.408 kb on - strand at 2138.411 kb on + strand at 2138.412 kb on - strand at 2138.412 kb on - strand at 2138.412 kb on - strand at 2138.415 kb on - strand at 2138.453 kb on + strand at 2138.453 kb on + strand at 2138.465 kb on + strand at 2138.543 kb on + strand at 2138.544 kb on - strand at 2138.601 kb on + strand at 2138.602 kb on - strand at 2138.602 kb on - strand at 2138.676 kb on + strand at 2138.677 kb on - strand at 2138.677 kb on - strand at 2138.706 kb on - strand at 2138.850 kb on + strand at 2138.850 kb on + strand at 2138.851 kb on - strand at 2138.852 kb on + strand at 2138.852 kb on + strand at 2138.852 kb on + strand at 2138.852 kb on + strand at 2138.853 kb on - strand at 2138.867 kb on + strand at 2138.867 kb on + strand at 2138.868 kb on - strand at 2138.868 kb on - strand at 2138.892 kb on + strand, within CA264_09130 at 2138.893 kb on - strand, within CA264_09130 at 2138.904 kb on + strand, within CA264_09130 at 2138.930 kb on - strand, within CA264_09130 at 2139.006 kb on + strand, within CA264_09130 at 2139.006 kb on + strand, within CA264_09130 at 2139.007 kb on - strand, within CA264_09130 at 2139.007 kb on - strand, within CA264_09130 at 2139.009 kb on + strand, within CA264_09130 at 2139.010 kb on - strand, within CA264_09130 at 2139.183 kb on - strand, within CA264_09130 at 2139.271 kb on + strand, within CA264_09130 at 2139.296 kb on - strand, within CA264_09130 at 2139.403 kb on + strand, within CA264_09130 at 2139.404 kb on - strand, within CA264_09130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 2,136,071 + CA264_09120 0.39 -0.3 2,136,141 + CA264_09120 0.45 -1.1 2,136,141 + CA264_09120 0.45 -1.5 2,136,141 + CA264_09120 0.45 -0.0 2,136,142 - CA264_09120 0.45 +0.2 2,136,234 + CA264_09120 0.52 -0.9 2,136,285 + CA264_09120 0.57 -1.5 2,136,291 - CA264_09120 0.57 +0.9 2,136,354 + CA264_09120 0.63 -0.7 2,136,354 + CA264_09120 0.63 -1.0 2,136,354 + CA264_09120 0.63 -1.8 2,136,354 + CA264_09120 0.63 -0.9 2,136,355 - CA264_09120 0.63 -0.2 2,136,355 - CA264_09120 0.63 +0.0 2,136,355 - CA264_09120 0.63 -0.1 2,136,355 - CA264_09120 0.63 -0.3 2,136,356 + CA264_09120 0.63 -0.1 2,136,357 - CA264_09120 0.63 +0.9 2,136,357 - CA264_09120 0.63 -0.4 2,136,403 + CA264_09120 0.67 -1.4 2,136,477 + CA264_09120 0.73 +0.7 2,136,486 - CA264_09120 0.74 -1.6 2,136,537 + CA264_09120 0.78 -1.1 2,136,537 + CA264_09120 0.78 -0.1 2,136,597 + CA264_09120 0.83 -1.5 2,136,648 + CA264_09120 0.87 -1.5 2,136,722 + -1.3 2,136,766 - +0.3 2,137,009 - -0.6 2,137,011 + -0.3 2,137,011 + -0.6 2,137,019 + +0.0 2,137,100 - -1.1 2,137,183 - CA264_09125 0.10 -0.5 2,137,231 - CA264_09125 0.14 +0.1 2,137,257 - CA264_09125 0.16 -0.5 2,137,277 + CA264_09125 0.17 -0.1 2,137,278 - CA264_09125 0.17 +1.2 2,137,327 + CA264_09125 0.20 -2.0 2,137,328 - CA264_09125 0.21 +0.5 2,137,402 + CA264_09125 0.26 +0.8 2,137,402 + CA264_09125 0.26 -1.2 2,137,402 + CA264_09125 0.26 +1.4 2,137,403 - CA264_09125 0.26 +0.4 2,137,403 - CA264_09125 0.26 +0.4 2,137,406 + CA264_09125 0.26 +0.1 2,137,407 - CA264_09125 0.26 +0.2 2,137,433 - CA264_09125 0.28 +0.2 2,137,433 - CA264_09125 0.28 +0.2 2,137,434 + CA264_09125 0.28 +0.8 2,137,478 + CA264_09125 0.31 -0.1 2,137,479 - CA264_09125 0.31 +0.8 2,137,479 - CA264_09125 0.31 -0.2 2,137,482 + CA264_09125 0.31 +0.2 2,137,483 - CA264_09125 0.31 -0.9 2,137,553 - CA264_09125 0.36 +0.9 2,137,640 + CA264_09125 0.42 +0.2 2,137,684 + CA264_09125 0.46 +0.8 2,137,780 + CA264_09125 0.52 +0.5 2,137,780 + CA264_09125 0.52 -1.5 2,137,967 - CA264_09125 0.66 +0.6 2,137,967 - CA264_09125 0.66 -0.1 2,137,967 - CA264_09125 0.66 -0.9 2,137,970 + CA264_09125 0.66 +0.8 2,137,970 + CA264_09125 0.66 +0.4 2,138,012 - CA264_09125 0.69 +0.3 2,138,030 - CA264_09125 0.70 +0.4 2,138,080 - CA264_09125 0.74 -0.4 2,138,080 - CA264_09125 0.74 -0.1 2,138,099 - CA264_09125 0.75 -0.1 2,138,155 + CA264_09125 0.79 +0.3 2,138,317 + -0.1 2,138,318 - -0.2 2,138,402 + +0.6 2,138,402 + +1.3 2,138,407 + -1.4 2,138,408 - +0.0 2,138,408 - +0.4 2,138,408 - +1.0 2,138,408 - +1.0 2,138,411 + +1.0 2,138,412 - +0.8 2,138,412 - +0.2 2,138,412 - +1.0 2,138,415 - +0.0 2,138,453 + -0.1 2,138,453 + -0.7 2,138,465 + -0.3 2,138,543 + +0.1 2,138,544 - -0.7 2,138,601 + -0.8 2,138,602 - +0.2 2,138,602 - -0.2 2,138,676 + +0.0 2,138,677 - +0.3 2,138,677 - +0.3 2,138,706 - +0.8 2,138,850 + +0.1 2,138,850 + +0.9 2,138,851 - -1.0 2,138,852 + -1.1 2,138,852 + -0.0 2,138,852 + +0.4 2,138,852 + -0.2 2,138,853 - +2.1 2,138,867 + +1.0 2,138,867 + -0.6 2,138,868 - -0.0 2,138,868 - -0.2 2,138,892 + CA264_09130 0.10 -1.1 2,138,893 - CA264_09130 0.10 +1.0 2,138,904 + CA264_09130 0.11 -1.0 2,138,930 - CA264_09130 0.12 -0.0 2,139,006 + CA264_09130 0.15 +0.1 2,139,006 + CA264_09130 0.15 -0.2 2,139,007 - CA264_09130 0.15 -0.1 2,139,007 - CA264_09130 0.15 -0.4 2,139,009 + CA264_09130 0.15 +0.0 2,139,010 - CA264_09130 0.15 +0.1 2,139,183 - CA264_09130 0.23 -0.2 2,139,271 + CA264_09130 0.27 -0.3 2,139,296 - CA264_09130 0.28 +0.2 2,139,403 + CA264_09130 0.32 +0.5 2,139,404 - CA264_09130 0.32 +0.1
Or see this region's nucleotide sequence