Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08685

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08680 and CA264_08685 are separated by 96 nucleotidesCA264_08685 and CA264_08690 overlap by 1 nucleotides CA264_08680: CA264_08680 - glycoside hydrolase, at 2,014,426 to 2,015,604 _08680 CA264_08685: CA264_08685 - class I and II aminotransferase, at 2,015,701 to 2,016,789 _08685 CA264_08690: CA264_08690 - dipeptide epimerase, at 2,016,789 to 2,017,802 _08690 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -1 0 1 2at 2014.761 kb on + strand, within CA264_08680at 2014.762 kb on - strand, within CA264_08680at 2014.796 kb on - strand, within CA264_08680at 2015.007 kb on - strand, within CA264_08680at 2015.007 kb on - strand, within CA264_08680at 2015.063 kb on + strand, within CA264_08680at 2015.160 kb on - strand, within CA264_08680at 2015.204 kb on + strand, within CA264_08680at 2015.336 kb on - strand, within CA264_08680at 2015.341 kb on + strand, within CA264_08680at 2015.341 kb on + strand, within CA264_08680at 2015.341 kb on + strand, within CA264_08680at 2015.350 kb on + strand, within CA264_08680at 2015.355 kb on - strand, within CA264_08680at 2015.373 kb on + strand, within CA264_08680at 2015.373 kb on + strand, within CA264_08680at 2015.374 kb on - strand, within CA264_08680at 2015.583 kb on + strandat 2015.610 kb on + strandat 2015.678 kb on + strandat 2015.679 kb on - strandat 2015.680 kb on + strandat 2015.687 kb on - strandat 2015.703 kb on - strandat 2015.734 kb on + strandat 2015.879 kb on + strand, within CA264_08685at 2015.880 kb on - strand, within CA264_08685at 2015.889 kb on + strand, within CA264_08685at 2015.962 kb on - strand, within CA264_08685at 2015.962 kb on - strand, within CA264_08685at 2015.962 kb on - strand, within CA264_08685at 2016.014 kb on + strand, within CA264_08685at 2016.026 kb on + strand, within CA264_08685at 2016.100 kb on + strand, within CA264_08685at 2016.118 kb on + strand, within CA264_08685at 2016.154 kb on + strand, within CA264_08685at 2016.169 kb on - strand, within CA264_08685at 2016.169 kb on - strand, within CA264_08685at 2016.171 kb on - strand, within CA264_08685at 2016.188 kb on + strand, within CA264_08685at 2016.189 kb on - strand, within CA264_08685at 2016.190 kb on + strand, within CA264_08685at 2016.190 kb on + strand, within CA264_08685at 2016.192 kb on + strand, within CA264_08685at 2016.192 kb on + strand, within CA264_08685at 2016.244 kb on + strand, within CA264_08685at 2016.245 kb on - strand, within CA264_08685at 2016.250 kb on - strand, within CA264_08685at 2016.294 kb on - strand, within CA264_08685at 2016.468 kb on - strand, within CA264_08685at 2016.629 kb on + strand, within CA264_08685at 2016.629 kb on + strand, within CA264_08685at 2016.630 kb on - strand, within CA264_08685at 2016.630 kb on - strand, within CA264_08685at 2016.774 kb on - strandat 2016.850 kb on - strandat 2016.850 kb on - strandat 2016.908 kb on - strand, within CA264_08690at 2016.995 kb on + strand, within CA264_08690at 2016.996 kb on - strand, within CA264_08690at 2017.007 kb on + strand, within CA264_08690at 2017.106 kb on + strand, within CA264_08690at 2017.148 kb on - strand, within CA264_08690at 2017.197 kb on - strand, within CA264_08690at 2017.292 kb on + strand, within CA264_08690at 2017.292 kb on + strand, within CA264_08690at 2017.313 kb on + strand, within CA264_08690at 2017.392 kb on - strand, within CA264_08690at 2017.433 kb on + strand, within CA264_08690at 2017.433 kb on + strand, within CA264_08690at 2017.433 kb on + strand, within CA264_08690at 2017.433 kb on + strand, within CA264_08690at 2017.433 kb on + strand, within CA264_08690at 2017.434 kb on - strand, within CA264_08690at 2017.434 kb on - strand, within CA264_08690at 2017.434 kb on - strand, within CA264_08690at 2017.507 kb on - strand, within CA264_08690at 2017.542 kb on + strand, within CA264_08690at 2017.542 kb on + strand, within CA264_08690at 2017.543 kb on - strand, within CA264_08690at 2017.543 kb on - strand, within CA264_08690at 2017.658 kb on - strand, within CA264_08690at 2017.755 kb on - strandat 2017.755 kb on - strandat 2017.760 kb on + strandat 2017.761 kb on - strandat 2017.761 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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2,014,761 + CA264_08680 0.28 +1.0
2,014,762 - CA264_08680 0.28 +1.1
2,014,796 - CA264_08680 0.31 +0.4
2,015,007 - CA264_08680 0.49 +1.8
2,015,007 - CA264_08680 0.49 -0.0
2,015,063 + CA264_08680 0.54 -0.3
2,015,160 - CA264_08680 0.62 -0.6
2,015,204 + CA264_08680 0.66 +0.7
2,015,336 - CA264_08680 0.77 +0.4
2,015,341 + CA264_08680 0.78 +0.4
2,015,341 + CA264_08680 0.78 -0.2
2,015,341 + CA264_08680 0.78 -0.2
2,015,350 + CA264_08680 0.78 -0.7
2,015,355 - CA264_08680 0.79 +0.1
2,015,373 + CA264_08680 0.80 +0.7
2,015,373 + CA264_08680 0.80 -0.1
2,015,374 - CA264_08680 0.80 -0.6
2,015,583 + +0.7
2,015,610 + +0.6
2,015,678 + +0.6
2,015,679 - -0.1
2,015,680 + -0.1
2,015,687 - -0.1
2,015,703 - -0.3
2,015,734 + +1.1
2,015,879 + CA264_08685 0.16 +0.1
2,015,880 - CA264_08685 0.16 -0.1
2,015,889 + CA264_08685 0.17 +0.5
2,015,962 - CA264_08685 0.24 -0.4
2,015,962 - CA264_08685 0.24 -0.1
2,015,962 - CA264_08685 0.24 +0.1
2,016,014 + CA264_08685 0.29 -0.3
2,016,026 + CA264_08685 0.30 +0.3
2,016,100 + CA264_08685 0.37 -0.6
2,016,118 + CA264_08685 0.38 +0.5
2,016,154 + CA264_08685 0.42 +2.7
2,016,169 - CA264_08685 0.43 +0.6
2,016,169 - CA264_08685 0.43 +0.6
2,016,171 - CA264_08685 0.43 +0.2
2,016,188 + CA264_08685 0.45 -0.0
2,016,189 - CA264_08685 0.45 +0.0
2,016,190 + CA264_08685 0.45 -1.3
2,016,190 + CA264_08685 0.45 -0.1
2,016,192 + CA264_08685 0.45 -1.0
2,016,192 + CA264_08685 0.45 -0.5
2,016,244 + CA264_08685 0.50 -0.1
2,016,245 - CA264_08685 0.50 +0.8
2,016,250 - CA264_08685 0.50 +1.4
2,016,294 - CA264_08685 0.54 -0.5
2,016,468 - CA264_08685 0.70 -0.7
2,016,629 + CA264_08685 0.85 +0.3
2,016,629 + CA264_08685 0.85 -0.1
2,016,630 - CA264_08685 0.85 -0.1
2,016,630 - CA264_08685 0.85 -0.4
2,016,774 - -0.3
2,016,850 - -0.5
2,016,850 - +0.1
2,016,908 - CA264_08690 0.12 -0.3
2,016,995 + CA264_08690 0.20 +0.3
2,016,996 - CA264_08690 0.20 -0.6
2,017,007 + CA264_08690 0.21 +0.9
2,017,106 + CA264_08690 0.31 -0.7
2,017,148 - CA264_08690 0.35 -0.8
2,017,197 - CA264_08690 0.40 +0.2
2,017,292 + CA264_08690 0.50 -0.3
2,017,292 + CA264_08690 0.50 -0.1
2,017,313 + CA264_08690 0.52 +0.7
2,017,392 - CA264_08690 0.59 +1.2
2,017,433 + CA264_08690 0.64 +0.5
2,017,433 + CA264_08690 0.64 -0.0
2,017,433 + CA264_08690 0.64 -0.2
2,017,433 + CA264_08690 0.64 -0.7
2,017,433 + CA264_08690 0.64 -0.9
2,017,434 - CA264_08690 0.64 +0.3
2,017,434 - CA264_08690 0.64 -1.1
2,017,434 - CA264_08690 0.64 +0.1
2,017,507 - CA264_08690 0.71 +0.0
2,017,542 + CA264_08690 0.74 -0.5
2,017,542 + CA264_08690 0.74 -0.1
2,017,543 - CA264_08690 0.74 +1.6
2,017,543 - CA264_08690 0.74 -0.0
2,017,658 - CA264_08690 0.86 -0.2
2,017,755 - +0.2
2,017,755 - -0.2
2,017,760 + +0.3
2,017,761 - -0.2
2,017,761 - -0.5

Or see this region's nucleotide sequence