Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07495 and CA264_07500 are separated by 191 nucleotides CA264_07500 and CA264_07505 are separated by 342 nucleotides CA264_07505 and CA264_07510 are separated by 57 nucleotides
CA264_07495: CA264_07495 - GTP-binding protein YchF, at 1,734,542 to 1,735,639
_07495
CA264_07500: CA264_07500 - T9SS C-terminal target domain-containing protein, at 1,735,831 to 1,738,479
_07500
CA264_07505: CA264_07505 - GNAT family N-acetyltransferase, at 1,738,822 to 1,739,307
_07505
CA264_07510: CA264_07510 - DUF5103 domain-containing protein, at 1,739,365 to 1,740,675
_07510
Position (kb)
1735
1736
1737
1738
1739 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1735.391 kb on + strand, within CA264_07495 at 1735.416 kb on + strand, within CA264_07495 at 1735.537 kb on + strand at 1735.631 kb on - strand at 1735.638 kb on - strand at 1735.658 kb on - strand at 1735.707 kb on - strand at 1735.711 kb on + strand at 1735.711 kb on + strand at 1735.713 kb on + strand at 1735.750 kb on + strand at 1735.765 kb on + strand at 1735.765 kb on + strand at 1735.799 kb on + strand at 1735.803 kb on + strand at 1735.804 kb on - strand at 1735.830 kb on + strand at 1735.830 kb on + strand at 1735.831 kb on - strand at 1735.853 kb on + strand at 1735.984 kb on + strand at 1736.117 kb on + strand, within CA264_07500 at 1736.118 kb on - strand, within CA264_07500 at 1736.125 kb on - strand, within CA264_07500 at 1736.134 kb on - strand, within CA264_07500 at 1736.197 kb on + strand, within CA264_07500 at 1736.198 kb on - strand, within CA264_07500 at 1736.198 kb on - strand, within CA264_07500 at 1736.198 kb on - strand, within CA264_07500 at 1736.198 kb on - strand, within CA264_07500 at 1736.199 kb on + strand, within CA264_07500 at 1736.235 kb on + strand, within CA264_07500 at 1736.235 kb on + strand, within CA264_07500 at 1736.235 kb on + strand, within CA264_07500 at 1736.236 kb on - strand, within CA264_07500 at 1736.244 kb on + strand, within CA264_07500 at 1736.245 kb on - strand, within CA264_07500 at 1736.245 kb on - strand, within CA264_07500 at 1736.286 kb on + strand, within CA264_07500 at 1736.299 kb on - strand, within CA264_07500 at 1736.321 kb on - strand, within CA264_07500 at 1736.342 kb on + strand, within CA264_07500 at 1736.345 kb on - strand, within CA264_07500 at 1736.401 kb on + strand, within CA264_07500 at 1736.401 kb on + strand, within CA264_07500 at 1736.402 kb on - strand, within CA264_07500 at 1736.402 kb on - strand, within CA264_07500 at 1736.402 kb on - strand, within CA264_07500 at 1736.402 kb on - strand, within CA264_07500 at 1736.492 kb on - strand, within CA264_07500 at 1736.492 kb on - strand, within CA264_07500 at 1736.506 kb on + strand, within CA264_07500 at 1736.525 kb on - strand, within CA264_07500 at 1736.539 kb on - strand, within CA264_07500 at 1736.548 kb on + strand, within CA264_07500 at 1736.590 kb on + strand, within CA264_07500 at 1736.595 kb on + strand, within CA264_07500 at 1736.595 kb on + strand, within CA264_07500 at 1736.613 kb on + strand, within CA264_07500 at 1736.614 kb on - strand, within CA264_07500 at 1736.617 kb on + strand, within CA264_07500 at 1736.618 kb on - strand, within CA264_07500 at 1736.638 kb on + strand, within CA264_07500 at 1736.644 kb on + strand, within CA264_07500 at 1736.669 kb on + strand, within CA264_07500 at 1736.703 kb on - strand, within CA264_07500 at 1736.703 kb on - strand, within CA264_07500 at 1736.854 kb on - strand, within CA264_07500 at 1736.872 kb on + strand, within CA264_07500 at 1736.872 kb on + strand, within CA264_07500 at 1736.915 kb on + strand, within CA264_07500 at 1736.915 kb on + strand, within CA264_07500 at 1736.917 kb on + strand, within CA264_07500 at 1736.918 kb on - strand, within CA264_07500 at 1736.918 kb on - strand, within CA264_07500 at 1736.962 kb on + strand, within CA264_07500 at 1736.963 kb on - strand, within CA264_07500 at 1736.963 kb on - strand, within CA264_07500 at 1736.985 kb on - strand, within CA264_07500 at 1736.985 kb on - strand, within CA264_07500 at 1736.998 kb on - strand, within CA264_07500 at 1736.998 kb on - strand, within CA264_07500 at 1737.015 kb on + strand, within CA264_07500 at 1737.016 kb on - strand, within CA264_07500 at 1737.022 kb on + strand, within CA264_07500 at 1737.061 kb on - strand, within CA264_07500 at 1737.100 kb on + strand, within CA264_07500 at 1737.103 kb on - strand, within CA264_07500 at 1737.124 kb on - strand, within CA264_07500 at 1737.135 kb on - strand, within CA264_07500 at 1737.135 kb on - strand, within CA264_07500 at 1737.142 kb on + strand, within CA264_07500 at 1737.142 kb on + strand, within CA264_07500 at 1737.146 kb on + strand, within CA264_07500 at 1737.147 kb on - strand, within CA264_07500 at 1737.167 kb on + strand, within CA264_07500 at 1737.168 kb on - strand, within CA264_07500 at 1737.168 kb on - strand, within CA264_07500 at 1737.188 kb on + strand, within CA264_07500 at 1737.189 kb on - strand, within CA264_07500 at 1737.192 kb on + strand, within CA264_07500 at 1737.208 kb on - strand, within CA264_07500 at 1737.208 kb on - strand, within CA264_07500 at 1737.212 kb on + strand, within CA264_07500 at 1737.212 kb on + strand, within CA264_07500 at 1737.213 kb on - strand, within CA264_07500 at 1737.256 kb on - strand, within CA264_07500 at 1737.261 kb on + strand, within CA264_07500 at 1737.262 kb on - strand, within CA264_07500 at 1737.337 kb on + strand, within CA264_07500 at 1737.339 kb on + strand, within CA264_07500 at 1737.388 kb on - strand, within CA264_07500 at 1737.394 kb on - strand, within CA264_07500 at 1737.402 kb on + strand, within CA264_07500 at 1737.402 kb on + strand, within CA264_07500 at 1737.402 kb on + strand, within CA264_07500 at 1737.413 kb on + strand, within CA264_07500 at 1737.413 kb on + strand, within CA264_07500 at 1737.414 kb on - strand, within CA264_07500 at 1737.463 kb on + strand, within CA264_07500 at 1737.463 kb on + strand, within CA264_07500 at 1737.463 kb on + strand, within CA264_07500 at 1737.475 kb on + strand, within CA264_07500 at 1737.492 kb on + strand, within CA264_07500 at 1737.498 kb on + strand, within CA264_07500 at 1737.499 kb on - strand, within CA264_07500 at 1737.499 kb on - strand, within CA264_07500 at 1737.538 kb on - strand, within CA264_07500 at 1737.538 kb on - strand, within CA264_07500 at 1737.538 kb on - strand, within CA264_07500 at 1737.640 kb on - strand, within CA264_07500 at 1737.640 kb on - strand, within CA264_07500 at 1737.659 kb on + strand, within CA264_07500 at 1737.659 kb on + strand, within CA264_07500 at 1737.695 kb on - strand, within CA264_07500 at 1737.895 kb on - strand, within CA264_07500 at 1737.932 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.970 kb on + strand, within CA264_07500 at 1737.971 kb on - strand, within CA264_07500 at 1737.971 kb on - strand, within CA264_07500 at 1737.971 kb on - strand, within CA264_07500 at 1737.971 kb on - strand, within CA264_07500 at 1737.971 kb on - strand, within CA264_07500 at 1737.973 kb on - strand, within CA264_07500 at 1737.995 kb on + strand, within CA264_07500 at 1738.033 kb on - strand, within CA264_07500 at 1738.061 kb on - strand, within CA264_07500 at 1738.078 kb on - strand, within CA264_07500 at 1738.078 kb on - strand, within CA264_07500 at 1738.113 kb on - strand, within CA264_07500 at 1738.129 kb on - strand, within CA264_07500 at 1738.130 kb on + strand, within CA264_07500 at 1738.130 kb on + strand, within CA264_07500 at 1738.131 kb on - strand, within CA264_07500 at 1738.131 kb on - strand, within CA264_07500 at 1738.131 kb on - strand, within CA264_07500 at 1738.132 kb on + strand, within CA264_07500 at 1738.132 kb on + strand, within CA264_07500 at 1738.142 kb on - strand, within CA264_07500 at 1738.142 kb on - strand, within CA264_07500 at 1738.143 kb on + strand, within CA264_07500 at 1738.144 kb on - strand, within CA264_07500 at 1738.353 kb on - strand at 1738.353 kb on - strand at 1738.378 kb on - strand at 1738.398 kb on - strand at 1738.398 kb on - strand at 1738.420 kb on + strand at 1738.421 kb on - strand at 1738.438 kb on - strand at 1738.467 kb on - strand at 1738.469 kb on + strand at 1738.469 kb on + strand at 1738.470 kb on - strand at 1738.470 kb on - strand at 1738.488 kb on - strand at 1738.532 kb on + strand at 1738.542 kb on + strand at 1738.542 kb on + strand at 1738.545 kb on + strand at 1738.548 kb on + strand at 1738.552 kb on + strand at 1738.638 kb on + strand at 1738.640 kb on + strand at 1738.641 kb on - strand at 1738.644 kb on + strand at 1738.645 kb on - strand at 1738.645 kb on - strand at 1738.676 kb on + strand at 1738.677 kb on - strand at 1738.733 kb on - strand at 1738.734 kb on + strand at 1738.734 kb on + strand at 1738.734 kb on + strand at 1738.810 kb on + strand at 1738.817 kb on - strand at 1738.824 kb on - strand at 1738.825 kb on + strand at 1738.825 kb on + strand at 1738.826 kb on - strand at 1738.830 kb on + strand at 1738.881 kb on + strand, within CA264_07505 at 1738.881 kb on + strand, within CA264_07505 at 1738.882 kb on - strand, within CA264_07505 at 1738.902 kb on - strand, within CA264_07505 at 1738.968 kb on + strand, within CA264_07505 at 1738.969 kb on - strand, within CA264_07505 at 1738.969 kb on - strand, within CA264_07505 at 1739.068 kb on + strand, within CA264_07505 at 1739.073 kb on + strand, within CA264_07505 at 1739.083 kb on + strand, within CA264_07505 at 1739.083 kb on + strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.085 kb on + strand, within CA264_07505 at 1739.085 kb on + strand, within CA264_07505 at 1739.086 kb on - strand, within CA264_07505 at 1739.086 kb on - strand, within CA264_07505 at 1739.100 kb on + strand, within CA264_07505 at 1739.135 kb on - strand, within CA264_07505 at 1739.186 kb on + strand, within CA264_07505 at 1739.186 kb on + strand, within CA264_07505 at 1739.187 kb on - strand, within CA264_07505 at 1739.265 kb on + strand at 1739.293 kb on + strand at 1739.294 kb on - strand at 1739.361 kb on - strand at 1739.435 kb on + strand at 1739.436 kb on - strand at 1739.436 kb on - strand at 1739.450 kb on + strand at 1739.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 1,735,391 + CA264_07495 0.77 -0.1 1,735,416 + CA264_07495 0.80 -0.3 1,735,537 + -0.7 1,735,631 - -0.8 1,735,638 - -0.1 1,735,658 - +0.2 1,735,707 - -1.1 1,735,711 + -0.1 1,735,711 + -0.2 1,735,713 + -0.1 1,735,750 + -0.0 1,735,765 + -0.1 1,735,765 + -0.7 1,735,799 + +0.9 1,735,803 + +0.1 1,735,804 - -0.5 1,735,830 + +0.5 1,735,830 + -0.3 1,735,831 - -0.2 1,735,853 + -0.1 1,735,984 + +0.2 1,736,117 + CA264_07500 0.11 -0.4 1,736,118 - CA264_07500 0.11 +0.6 1,736,125 - CA264_07500 0.11 -0.2 1,736,134 - CA264_07500 0.11 -0.4 1,736,197 + CA264_07500 0.14 -0.9 1,736,198 - CA264_07500 0.14 +0.3 1,736,198 - CA264_07500 0.14 -0.6 1,736,198 - CA264_07500 0.14 +0.1 1,736,198 - CA264_07500 0.14 +0.4 1,736,199 + CA264_07500 0.14 +0.1 1,736,235 + CA264_07500 0.15 -0.4 1,736,235 + CA264_07500 0.15 +0.1 1,736,235 + CA264_07500 0.15 +0.5 1,736,236 - CA264_07500 0.15 -0.0 1,736,244 + CA264_07500 0.16 -0.2 1,736,245 - CA264_07500 0.16 -0.3 1,736,245 - CA264_07500 0.16 -0.8 1,736,286 + CA264_07500 0.17 -0.2 1,736,299 - CA264_07500 0.18 -0.1 1,736,321 - CA264_07500 0.18 +0.4 1,736,342 + CA264_07500 0.19 -0.6 1,736,345 - CA264_07500 0.19 -0.5 1,736,401 + CA264_07500 0.22 -1.2 1,736,401 + CA264_07500 0.22 +0.4 1,736,402 - CA264_07500 0.22 -0.7 1,736,402 - CA264_07500 0.22 +1.3 1,736,402 - CA264_07500 0.22 +0.0 1,736,402 - CA264_07500 0.22 +0.1 1,736,492 - CA264_07500 0.25 -0.1 1,736,492 - CA264_07500 0.25 +1.4 1,736,506 + CA264_07500 0.25 +0.4 1,736,525 - CA264_07500 0.26 +0.2 1,736,539 - CA264_07500 0.27 +0.2 1,736,548 + CA264_07500 0.27 +0.9 1,736,590 + CA264_07500 0.29 -0.5 1,736,595 + CA264_07500 0.29 -0.3 1,736,595 + CA264_07500 0.29 -0.0 1,736,613 + CA264_07500 0.30 +1.2 1,736,614 - CA264_07500 0.30 -0.5 1,736,617 + CA264_07500 0.30 -0.6 1,736,618 - CA264_07500 0.30 +0.7 1,736,638 + CA264_07500 0.30 +0.3 1,736,644 + CA264_07500 0.31 -0.7 1,736,669 + CA264_07500 0.32 +0.1 1,736,703 - CA264_07500 0.33 -1.9 1,736,703 - CA264_07500 0.33 -0.3 1,736,854 - CA264_07500 0.39 +0.0 1,736,872 + CA264_07500 0.39 +0.3 1,736,872 + CA264_07500 0.39 +0.3 1,736,915 + CA264_07500 0.41 -0.1 1,736,915 + CA264_07500 0.41 -1.2 1,736,917 + CA264_07500 0.41 -0.0 1,736,918 - CA264_07500 0.41 +0.9 1,736,918 - CA264_07500 0.41 +0.4 1,736,962 + CA264_07500 0.43 -0.4 1,736,963 - CA264_07500 0.43 -0.3 1,736,963 - CA264_07500 0.43 +0.2 1,736,985 - CA264_07500 0.44 +1.6 1,736,985 - CA264_07500 0.44 -0.1 1,736,998 - CA264_07500 0.44 -0.2 1,736,998 - CA264_07500 0.44 -0.4 1,737,015 + CA264_07500 0.45 +0.7 1,737,016 - CA264_07500 0.45 -0.7 1,737,022 + CA264_07500 0.45 -0.0 1,737,061 - CA264_07500 0.46 -0.3 1,737,100 + CA264_07500 0.48 -0.5 1,737,103 - CA264_07500 0.48 -0.0 1,737,124 - CA264_07500 0.49 -0.3 1,737,135 - CA264_07500 0.49 -0.3 1,737,135 - CA264_07500 0.49 +1.0 1,737,142 + CA264_07500 0.49 +0.3 1,737,142 + CA264_07500 0.49 +1.0 1,737,146 + CA264_07500 0.50 -0.9 1,737,147 - CA264_07500 0.50 -0.7 1,737,167 + CA264_07500 0.50 +0.1 1,737,168 - CA264_07500 0.50 -0.4 1,737,168 - CA264_07500 0.50 +0.7 1,737,188 + CA264_07500 0.51 +0.9 1,737,189 - CA264_07500 0.51 +0.7 1,737,192 + CA264_07500 0.51 -1.4 1,737,208 - CA264_07500 0.52 -1.0 1,737,208 - CA264_07500 0.52 +0.1 1,737,212 + CA264_07500 0.52 +0.3 1,737,212 + CA264_07500 0.52 -1.0 1,737,213 - CA264_07500 0.52 -0.5 1,737,256 - CA264_07500 0.54 +0.7 1,737,261 + CA264_07500 0.54 -0.5 1,737,262 - CA264_07500 0.54 +0.0 1,737,337 + CA264_07500 0.57 +1.0 1,737,339 + CA264_07500 0.57 -0.1 1,737,388 - CA264_07500 0.59 +0.5 1,737,394 - CA264_07500 0.59 -2.6 1,737,402 + CA264_07500 0.59 -0.2 1,737,402 + CA264_07500 0.59 -0.2 1,737,402 + CA264_07500 0.59 -0.6 1,737,413 + CA264_07500 0.60 +0.4 1,737,413 + CA264_07500 0.60 +0.1 1,737,414 - CA264_07500 0.60 +0.5 1,737,463 + CA264_07500 0.62 -0.2 1,737,463 + CA264_07500 0.62 -0.3 1,737,463 + CA264_07500 0.62 -0.4 1,737,475 + CA264_07500 0.62 +1.6 1,737,492 + CA264_07500 0.63 -0.4 1,737,498 + CA264_07500 0.63 +1.0 1,737,499 - CA264_07500 0.63 +0.0 1,737,499 - CA264_07500 0.63 +1.7 1,737,538 - CA264_07500 0.64 +0.4 1,737,538 - CA264_07500 0.64 +0.7 1,737,538 - CA264_07500 0.64 -0.4 1,737,640 - CA264_07500 0.68 -0.1 1,737,640 - CA264_07500 0.68 +0.2 1,737,659 + CA264_07500 0.69 +0.2 1,737,659 + CA264_07500 0.69 +0.1 1,737,695 - CA264_07500 0.70 +0.4 1,737,895 - CA264_07500 0.78 +0.7 1,737,932 + CA264_07500 0.79 +0.2 1,737,970 + CA264_07500 0.81 +0.2 1,737,970 + CA264_07500 0.81 +0.5 1,737,970 + CA264_07500 0.81 +0.2 1,737,970 + CA264_07500 0.81 -0.4 1,737,970 + CA264_07500 0.81 -0.2 1,737,970 + CA264_07500 0.81 -0.7 1,737,970 + CA264_07500 0.81 -0.5 1,737,970 + CA264_07500 0.81 +0.6 1,737,971 - CA264_07500 0.81 +1.7 1,737,971 - CA264_07500 0.81 +0.3 1,737,971 - CA264_07500 0.81 +1.3 1,737,971 - CA264_07500 0.81 -0.6 1,737,971 - CA264_07500 0.81 -0.8 1,737,973 - CA264_07500 0.81 +0.4 1,737,995 + CA264_07500 0.82 -0.3 1,738,033 - CA264_07500 0.83 -1.1 1,738,061 - CA264_07500 0.84 +0.7 1,738,078 - CA264_07500 0.85 -0.1 1,738,078 - CA264_07500 0.85 -0.1 1,738,113 - CA264_07500 0.86 -0.6 1,738,129 - CA264_07500 0.87 +0.1 1,738,130 + CA264_07500 0.87 +0.6 1,738,130 + CA264_07500 0.87 -0.3 1,738,131 - CA264_07500 0.87 -0.0 1,738,131 - CA264_07500 0.87 -0.1 1,738,131 - CA264_07500 0.87 +1.3 1,738,132 + CA264_07500 0.87 -0.5 1,738,132 + CA264_07500 0.87 +1.0 1,738,142 - CA264_07500 0.87 +0.1 1,738,142 - CA264_07500 0.87 -1.3 1,738,143 + CA264_07500 0.87 -0.4 1,738,144 - CA264_07500 0.87 -0.2 1,738,353 - +0.3 1,738,353 - -0.5 1,738,378 - +0.3 1,738,398 - -0.4 1,738,398 - +0.4 1,738,420 + +0.2 1,738,421 - +1.1 1,738,438 - -0.6 1,738,467 - +0.6 1,738,469 + +0.4 1,738,469 + -0.8 1,738,470 - -0.0 1,738,470 - -0.3 1,738,488 - +1.9 1,738,532 + -0.1 1,738,542 + +0.0 1,738,542 + -0.2 1,738,545 + +1.7 1,738,548 + +0.7 1,738,552 + -1.3 1,738,638 + +1.6 1,738,640 + +0.1 1,738,641 - +0.1 1,738,644 + -0.1 1,738,645 - +1.2 1,738,645 - +1.0 1,738,676 + -0.7 1,738,677 - +0.6 1,738,733 - -0.1 1,738,734 + +0.4 1,738,734 + -0.2 1,738,734 + -0.5 1,738,810 + -0.5 1,738,817 - -0.4 1,738,824 - +0.8 1,738,825 + +0.3 1,738,825 + +1.1 1,738,826 - -0.3 1,738,830 + +0.4 1,738,881 + CA264_07505 0.12 -0.5 1,738,881 + CA264_07505 0.12 -0.7 1,738,882 - CA264_07505 0.12 -0.7 1,738,902 - CA264_07505 0.16 +0.2 1,738,968 + CA264_07505 0.30 +0.2 1,738,969 - CA264_07505 0.30 -1.1 1,738,969 - CA264_07505 0.30 -0.5 1,739,068 + CA264_07505 0.51 -0.0 1,739,073 + CA264_07505 0.52 +1.3 1,739,083 + CA264_07505 0.54 -0.2 1,739,083 + CA264_07505 0.54 +0.4 1,739,084 - CA264_07505 0.54 +1.3 1,739,084 - CA264_07505 0.54 +0.9 1,739,084 - CA264_07505 0.54 -0.2 1,739,084 - CA264_07505 0.54 -0.8 1,739,084 - CA264_07505 0.54 -0.7 1,739,085 + CA264_07505 0.54 +0.5 1,739,085 + CA264_07505 0.54 +0.4 1,739,086 - CA264_07505 0.54 -0.7 1,739,086 - CA264_07505 0.54 +0.4 1,739,100 + CA264_07505 0.57 -0.1 1,739,135 - CA264_07505 0.64 -0.3 1,739,186 + CA264_07505 0.75 -0.5 1,739,186 + CA264_07505 0.75 +0.2 1,739,187 - CA264_07505 0.75 -0.1 1,739,265 + -1.1 1,739,293 + +0.3 1,739,294 - -0.4 1,739,361 - -0.2 1,739,435 + -0.0 1,739,436 - -0.5 1,739,436 - -0.2 1,739,450 + -0.5 1,739,451 - -0.8
Or see this region's nucleotide sequence