Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06805 and CA264_06810 overlap by 10 nucleotides CA264_06810 and CA264_06815 are separated by 209 nucleotides CA264_06815 and CA264_06820 are separated by 182 nucleotides
CA264_06805: CA264_06805 - hypothetical protein, at 1,572,383 to 1,573,201
_06805
CA264_06810: CA264_06810 - hypothetical protein, at 1,573,192 to 1,573,701
_06810
CA264_06815: CA264_06815 - iron-sulfur cluster repair di-iron protein, at 1,573,911 to 1,574,867
_06815
CA264_06820: CA264_06820 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 1,575,050 to 1,578,331
_06820
Position (kb)
1573
1574
1575 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1572.939 kb on - strand, within CA264_06805 at 1572.939 kb on - strand, within CA264_06805 at 1572.942 kb on - strand, within CA264_06805 at 1572.942 kb on - strand, within CA264_06805 at 1573.142 kb on + strand at 1573.143 kb on - strand at 1573.194 kb on - strand at 1573.264 kb on - strand, within CA264_06810 at 1573.429 kb on + strand, within CA264_06810 at 1573.430 kb on - strand, within CA264_06810 at 1573.539 kb on + strand, within CA264_06810 at 1573.715 kb on + strand at 1573.716 kb on - strand at 1573.761 kb on - strand at 1573.765 kb on - strand at 1573.912 kb on + strand at 1573.913 kb on - strand at 1573.920 kb on + strand at 1574.007 kb on + strand, within CA264_06815 at 1574.024 kb on + strand, within CA264_06815 at 1574.027 kb on + strand, within CA264_06815 at 1574.027 kb on + strand, within CA264_06815 at 1574.027 kb on + strand, within CA264_06815 at 1574.027 kb on + strand, within CA264_06815 at 1574.027 kb on + strand, within CA264_06815 at 1574.028 kb on - strand, within CA264_06815 at 1574.029 kb on + strand, within CA264_06815 at 1574.029 kb on + strand, within CA264_06815 at 1574.030 kb on - strand, within CA264_06815 at 1574.030 kb on - strand, within CA264_06815 at 1574.030 kb on - strand, within CA264_06815 at 1574.059 kb on + strand, within CA264_06815 at 1574.060 kb on - strand, within CA264_06815 at 1574.060 kb on - strand, within CA264_06815 at 1574.063 kb on + strand, within CA264_06815 at 1574.172 kb on + strand, within CA264_06815 at 1574.172 kb on + strand, within CA264_06815 at 1574.175 kb on - strand, within CA264_06815 at 1574.284 kb on - strand, within CA264_06815 at 1574.338 kb on + strand, within CA264_06815 at 1574.367 kb on + strand, within CA264_06815 at 1574.368 kb on - strand, within CA264_06815 at 1574.371 kb on + strand, within CA264_06815 at 1574.371 kb on + strand, within CA264_06815 at 1574.372 kb on - strand, within CA264_06815 at 1574.395 kb on + strand, within CA264_06815 at 1574.395 kb on + strand, within CA264_06815 at 1574.396 kb on - strand, within CA264_06815 at 1574.564 kb on + strand, within CA264_06815 at 1574.565 kb on - strand, within CA264_06815 at 1574.569 kb on - strand, within CA264_06815 at 1574.678 kb on - strand, within CA264_06815 at 1574.719 kb on + strand, within CA264_06815 at 1574.749 kb on + strand, within CA264_06815 at 1574.749 kb on + strand, within CA264_06815 at 1574.749 kb on + strand, within CA264_06815 at 1574.751 kb on + strand, within CA264_06815 at 1574.752 kb on - strand, within CA264_06815 at 1574.752 kb on - strand, within CA264_06815 at 1574.752 kb on - strand, within CA264_06815 at 1574.756 kb on + strand, within CA264_06815 at 1574.756 kb on + strand, within CA264_06815 at 1574.832 kb on + strand at 1574.832 kb on + strand at 1574.858 kb on + strand at 1574.880 kb on + strand at 1574.881 kb on - strand at 1574.884 kb on + strand at 1574.884 kb on + strand at 1574.884 kb on + strand at 1574.884 kb on + strand at 1574.885 kb on - strand at 1574.885 kb on - strand at 1574.885 kb on - strand at 1574.908 kb on + strand at 1574.908 kb on + strand at 1574.917 kb on - strand at 1574.917 kb on - strand at 1574.933 kb on + strand at 1574.992 kb on - strand at 1575.021 kb on + strand at 1575.022 kb on - strand at 1575.023 kb on - strand at 1575.027 kb on - strand at 1575.027 kb on - strand at 1575.028 kb on + strand at 1575.028 kb on + strand at 1575.028 kb on + strand at 1575.029 kb on - strand at 1575.030 kb on + strand at 1575.030 kb on + strand at 1575.030 kb on + strand at 1575.030 kb on + strand at 1575.061 kb on + strand at 1575.062 kb on - strand at 1575.183 kb on + strand at 1575.197 kb on - strand at 1575.210 kb on + strand at 1575.231 kb on + strand at 1575.242 kb on - strand at 1575.368 kb on + strand at 1575.368 kb on + strand at 1575.407 kb on + strand, within CA264_06820 at 1575.407 kb on + strand, within CA264_06820 at 1575.440 kb on + strand, within CA264_06820 at 1575.440 kb on + strand, within CA264_06820 at 1575.521 kb on + strand, within CA264_06820 at 1575.521 kb on + strand, within CA264_06820 at 1575.521 kb on + strand, within CA264_06820 at 1575.522 kb on - strand, within CA264_06820 at 1575.524 kb on + strand, within CA264_06820 at 1575.622 kb on - strand, within CA264_06820 at 1575.622 kb on - strand, within CA264_06820 at 1575.640 kb on + strand, within CA264_06820 at 1575.678 kb on - strand, within CA264_06820 at 1575.701 kb on + strand, within CA264_06820 at 1575.702 kb on - strand, within CA264_06820 at 1575.702 kb on - strand, within CA264_06820 at 1575.702 kb on - strand, within CA264_06820 at 1575.799 kb on + strand, within CA264_06820 at 1575.802 kb on + strand, within CA264_06820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 1,572,939 - CA264_06805 0.68 -0.1 1,572,939 - CA264_06805 0.68 +0.5 1,572,942 - CA264_06805 0.68 +0.9 1,572,942 - CA264_06805 0.68 +0.4 1,573,142 + -0.3 1,573,143 - +0.6 1,573,194 - -0.3 1,573,264 - CA264_06810 0.14 +0.8 1,573,429 + CA264_06810 0.46 -0.3 1,573,430 - CA264_06810 0.47 -0.1 1,573,539 + CA264_06810 0.68 +0.0 1,573,715 + -0.6 1,573,716 - +0.1 1,573,761 - -0.9 1,573,765 - -0.5 1,573,912 + -0.8 1,573,913 - -0.1 1,573,920 + -0.5 1,574,007 + CA264_06815 0.10 +0.5 1,574,024 + CA264_06815 0.12 -0.6 1,574,027 + CA264_06815 0.12 -0.9 1,574,027 + CA264_06815 0.12 -0.1 1,574,027 + CA264_06815 0.12 -1.3 1,574,027 + CA264_06815 0.12 -0.8 1,574,027 + CA264_06815 0.12 -2.3 1,574,028 - CA264_06815 0.12 -1.0 1,574,029 + CA264_06815 0.12 -0.8 1,574,029 + CA264_06815 0.12 -0.5 1,574,030 - CA264_06815 0.12 -0.0 1,574,030 - CA264_06815 0.12 -0.5 1,574,030 - CA264_06815 0.12 -0.6 1,574,059 + CA264_06815 0.15 -0.3 1,574,060 - CA264_06815 0.16 -0.2 1,574,060 - CA264_06815 0.16 -0.6 1,574,063 + CA264_06815 0.16 -1.6 1,574,172 + CA264_06815 0.27 -0.4 1,574,172 + CA264_06815 0.27 -0.3 1,574,175 - CA264_06815 0.28 +0.3 1,574,284 - CA264_06815 0.39 -1.1 1,574,338 + CA264_06815 0.45 +0.3 1,574,367 + CA264_06815 0.48 +0.1 1,574,368 - CA264_06815 0.48 -0.0 1,574,371 + CA264_06815 0.48 -2.1 1,574,371 + CA264_06815 0.48 -0.4 1,574,372 - CA264_06815 0.48 -0.7 1,574,395 + CA264_06815 0.51 -0.2 1,574,395 + CA264_06815 0.51 -1.1 1,574,396 - CA264_06815 0.51 -0.5 1,574,564 + CA264_06815 0.68 -0.0 1,574,565 - CA264_06815 0.68 +0.0 1,574,569 - CA264_06815 0.69 +0.7 1,574,678 - CA264_06815 0.80 -0.5 1,574,719 + CA264_06815 0.84 -0.1 1,574,749 + CA264_06815 0.88 +0.7 1,574,749 + CA264_06815 0.88 +1.3 1,574,749 + CA264_06815 0.88 +1.5 1,574,751 + CA264_06815 0.88 -0.3 1,574,752 - CA264_06815 0.88 +0.1 1,574,752 - CA264_06815 0.88 +1.0 1,574,752 - CA264_06815 0.88 +1.1 1,574,756 + CA264_06815 0.88 +0.1 1,574,756 + CA264_06815 0.88 -0.2 1,574,832 + -0.6 1,574,832 + -0.2 1,574,858 + -1.0 1,574,880 + -0.1 1,574,881 - +0.6 1,574,884 + -1.4 1,574,884 + +0.1 1,574,884 + +0.4 1,574,884 + +0.2 1,574,885 - -1.3 1,574,885 - -0.1 1,574,885 - -0.1 1,574,908 + -0.5 1,574,908 + +0.3 1,574,917 - -0.4 1,574,917 - -0.2 1,574,933 + -0.6 1,574,992 - -3.2 1,575,021 + -0.9 1,575,022 - +0.1 1,575,023 - -2.1 1,575,027 - -1.1 1,575,027 - -0.7 1,575,028 + +0.1 1,575,028 + -0.3 1,575,028 + -1.3 1,575,029 - -1.1 1,575,030 + -0.7 1,575,030 + -1.1 1,575,030 + +1.0 1,575,030 + -0.3 1,575,061 + -0.3 1,575,062 - -1.1 1,575,183 + +0.3 1,575,197 - -0.7 1,575,210 + -1.3 1,575,231 + -0.4 1,575,242 - -0.5 1,575,368 + -1.1 1,575,368 + +1.6 1,575,407 + CA264_06820 0.11 -0.9 1,575,407 + CA264_06820 0.11 +0.5 1,575,440 + CA264_06820 0.12 -0.2 1,575,440 + CA264_06820 0.12 -0.7 1,575,521 + CA264_06820 0.14 +0.5 1,575,521 + CA264_06820 0.14 -1.7 1,575,521 + CA264_06820 0.14 -2.0 1,575,522 - CA264_06820 0.14 -0.6 1,575,524 + CA264_06820 0.14 -0.4 1,575,622 - CA264_06820 0.17 -0.6 1,575,622 - CA264_06820 0.17 -0.3 1,575,640 + CA264_06820 0.18 -1.3 1,575,678 - CA264_06820 0.19 -0.3 1,575,701 + CA264_06820 0.20 -0.7 1,575,702 - CA264_06820 0.20 -0.2 1,575,702 - CA264_06820 0.20 -0.8 1,575,702 - CA264_06820 0.20 -0.0 1,575,799 + CA264_06820 0.23 +0.5 1,575,802 + CA264_06820 0.23 -0.5
Or see this region's nucleotide sequence