Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01780 and CA264_01785 are separated by 45 nucleotides CA264_01785 and CA264_01790 are separated by 33 nucleotides CA264_01790 and CA264_01795 are separated by 154 nucleotides CA264_01795 and CA264_01800 are separated by 144 nucleotides
CA264_01780: CA264_01780 - hypothetical protein, at 421,738 to 422,310
_01780
CA264_01785: CA264_01785 - hypothetical protein, at 422,356 to 422,796
_01785
CA264_01790: CA264_01790 - hypothetical protein, at 422,830 to 423,120
_01790
CA264_01795: CA264_01795 - hypothetical protein, at 423,275 to 423,592
_01795
CA264_01800: CA264_01800 - gluconate kinase, at 423,737 to 425,260
_01800
Position (kb) 423
424 Strain fitness (log2 ratio) -1
0
1
2 at 422.306 kb on - strand at 422.357 kb on + strand at 422.409 kb on - strand, within CA264_01785 at 422.409 kb on - strand, within CA264_01785 at 422.425 kb on + strand, within CA264_01785 at 422.466 kb on - strand, within CA264_01785 at 422.640 kb on + strand, within CA264_01785 at 422.652 kb on - strand, within CA264_01785 at 422.690 kb on - strand, within CA264_01785 at 422.690 kb on - strand, within CA264_01785 at 422.695 kb on + strand, within CA264_01785 at 422.695 kb on + strand, within CA264_01785 at 422.696 kb on - strand, within CA264_01785 at 422.696 kb on - strand, within CA264_01785 at 422.732 kb on - strand, within CA264_01785 at 422.790 kb on + strand at 422.829 kb on + strand at 422.918 kb on + strand, within CA264_01790 at 422.978 kb on + strand, within CA264_01790 at 423.136 kb on + strand at 423.137 kb on - strand at 423.142 kb on + strand at 423.142 kb on + strand at 423.143 kb on - strand at 423.143 kb on - strand at 423.161 kb on + strand at 423.177 kb on + strand at 423.178 kb on - strand at 423.254 kb on - strand at 423.338 kb on - strand, within CA264_01795 at 423.390 kb on - strand, within CA264_01795 at 423.501 kb on - strand, within CA264_01795 at 423.624 kb on - strand at 423.635 kb on + strand at 423.635 kb on + strand at 423.636 kb on - strand at 423.636 kb on - strand at 423.673 kb on + strand at 423.673 kb on + strand at 423.673 kb on + strand at 423.685 kb on + strand at 423.686 kb on - strand at 423.686 kb on - strand at 423.696 kb on + strand at 423.708 kb on + strand at 423.708 kb on + strand at 423.708 kb on + strand at 423.709 kb on - strand at 423.712 kb on + strand at 423.712 kb on + strand at 423.713 kb on - strand at 423.713 kb on - strand at 423.723 kb on - strand at 423.755 kb on - strand at 423.822 kb on - strand at 423.849 kb on + strand at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.105 kb on - strand, within CA264_01800 at 424.105 kb on - strand, within CA264_01800 at 424.107 kb on - strand, within CA264_01800 at 424.232 kb on + strand, within CA264_01800 at 424.253 kb on - strand, within CA264_01800 at 424.341 kb on + strand, within CA264_01800 at 424.341 kb on + strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.420 kb on + strand, within CA264_01800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 422,306 - +0.1 422,357 + +0.8 422,409 - CA264_01785 0.12 +0.6 422,409 - CA264_01785 0.12 -0.1 422,425 + CA264_01785 0.16 -0.4 422,466 - CA264_01785 0.25 +0.8 422,640 + CA264_01785 0.64 +0.2 422,652 - CA264_01785 0.67 -0.3 422,690 - CA264_01785 0.76 -1.0 422,690 - CA264_01785 0.76 -0.1 422,695 + CA264_01785 0.77 -0.6 422,695 + CA264_01785 0.77 -0.4 422,696 - CA264_01785 0.77 +0.3 422,696 - CA264_01785 0.77 +0.9 422,732 - CA264_01785 0.85 -0.2 422,790 + +0.1 422,829 + +0.5 422,918 + CA264_01790 0.30 -0.3 422,978 + CA264_01790 0.51 +0.1 423,136 + -0.5 423,137 - -0.0 423,142 + +0.3 423,142 + -1.5 423,143 - +1.0 423,143 - +1.5 423,161 + +0.9 423,177 + -0.4 423,178 - -0.5 423,254 - -0.7 423,338 - CA264_01795 0.20 -0.8 423,390 - CA264_01795 0.36 -0.1 423,501 - CA264_01795 0.71 +0.9 423,624 - -0.4 423,635 + -1.2 423,635 + -1.3 423,636 - -1.5 423,636 - -0.2 423,673 + -0.2 423,673 + -1.2 423,673 + -0.2 423,685 + -0.4 423,686 - -1.1 423,686 - +0.1 423,696 + -1.0 423,708 + -0.2 423,708 + -1.0 423,708 + -0.0 423,709 - -0.0 423,712 + +0.4 423,712 + +2.5 423,713 - -0.7 423,713 - +0.3 423,723 - +0.5 423,755 - -0.0 423,822 - -0.2 423,849 + -0.2 424,104 + CA264_01800 0.24 +0.9 424,104 + CA264_01800 0.24 -0.1 424,104 + CA264_01800 0.24 -0.3 424,104 + CA264_01800 0.24 +0.5 424,104 + CA264_01800 0.24 +0.3 424,105 - CA264_01800 0.24 -0.0 424,105 - CA264_01800 0.24 +0.3 424,107 - CA264_01800 0.24 +0.6 424,232 + CA264_01800 0.32 -0.2 424,253 - CA264_01800 0.34 +0.4 424,341 + CA264_01800 0.40 -0.4 424,341 + CA264_01800 0.40 -0.1 424,380 - CA264_01800 0.42 -1.2 424,380 - CA264_01800 0.42 +0.8 424,407 - CA264_01800 0.44 +0.2 424,407 - CA264_01800 0.44 -0.1 424,420 + CA264_01800 0.45 -0.1
Or see this region's nucleotide sequence