Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01705 and CA264_01710 are separated by 195 nucleotides CA264_01710 and CA264_01715 are separated by 62 nucleotides CA264_01715 and CA264_01720 are separated by 93 nucleotides CA264_01720 and CA264_01725 are separated by 2 nucleotides
CA264_01705: CA264_01705 - NADH-quinone oxidoreductase subunit H, at 399,315 to 400,418
_01705
CA264_01710: CA264_01710 - coenzyme A pyrophosphatase, at 400,614 to 401,261
_01710
CA264_01715: CA264_01715 - 4Fe-4S ferredoxin, at 401,324 to 401,926
_01715
CA264_01720: CA264_01720 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, at 402,020 to 402,547
_01720
CA264_01725: CA264_01725 - NADH-quinone oxidoreductase subunit K, at 402,550 to 402,864
_01725
Position (kb) 401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.416 kb on + strand at 400.416 kb on + strand at 400.422 kb on - strand at 400.450 kb on - strand at 400.456 kb on - strand at 400.456 kb on - strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.496 kb on - strand at 400.507 kb on + strand at 400.508 kb on - strand at 400.510 kb on - strand at 400.535 kb on + strand at 400.597 kb on - strand at 400.597 kb on - strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.660 kb on + strand at 400.757 kb on - strand, within CA264_01710 at 400.785 kb on - strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.925 kb on + strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 401.013 kb on + strand, within CA264_01710 at 401.015 kb on + strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.018 kb on - strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.133 kb on - strand at 401.157 kb on + strand, within CA264_01710 at 401.158 kb on - strand, within CA264_01710 at 401.177 kb on + strand, within CA264_01710 at 401.178 kb on - strand, within CA264_01710 at 401.224 kb on + strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.228 kb on + strand at 401.368 kb on - strand at 401.368 kb on - strand at 401.441 kb on + strand, within CA264_01715 at 401.442 kb on - strand, within CA264_01715 at 401.442 kb on - strand, within CA264_01715 at 401.546 kb on - strand, within CA264_01715 at 401.622 kb on + strand, within CA264_01715 at 401.676 kb on - strand, within CA264_01715 at 401.693 kb on - strand, within CA264_01715 at 402.030 kb on + strand at 402.030 kb on + strand at 402.031 kb on - strand at 402.031 kb on - strand at 402.091 kb on - strand, within CA264_01720 at 402.241 kb on + strand, within CA264_01720 at 402.289 kb on - strand, within CA264_01720 at 402.298 kb on - strand, within CA264_01720 at 402.323 kb on - strand, within CA264_01720 at 402.325 kb on - strand, within CA264_01720 at 402.341 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.343 kb on + strand, within CA264_01720 at 402.344 kb on - strand, within CA264_01720 at 402.346 kb on + strand, within CA264_01720 at 402.346 kb on + strand, within CA264_01720 at 402.352 kb on + strand, within CA264_01720 at 402.353 kb on - strand, within CA264_01720 at 402.462 kb on + strand, within CA264_01720 at 402.463 kb on - strand, within CA264_01720 at 402.519 kb on - strand at 402.519 kb on - strand at 402.520 kb on + strand at 402.520 kb on + strand at 402.521 kb on - strand at 402.574 kb on - strand at 402.579 kb on - strand at 402.585 kb on - strand, within CA264_01725 at 402.815 kb on - strand, within CA264_01725 at 402.862 kb on + strand at 402.862 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.880 kb on + strand at 402.897 kb on + strand at 402.897 kb on + strand at 402.897 kb on + strand at 402.901 kb on + strand at 402.917 kb on + strand at 402.917 kb on + strand at 402.917 kb on + strand at 402.918 kb on - strand at 402.918 kb on - strand at 402.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 400,416 + -0.1 400,416 + +0.8 400,422 - -0.6 400,450 - -0.4 400,456 - +1.3 400,456 - +0.5 400,460 + +0.5 400,460 + -0.5 400,460 + +0.1 400,460 + +0.3 400,461 - -0.8 400,461 - +1.6 400,461 - +1.4 400,461 - -1.0 400,462 + -0.0 400,462 + +0.3 400,462 + -0.6 400,496 - -0.7 400,507 + +1.3 400,508 - -0.1 400,510 - +1.2 400,535 + -0.1 400,597 - +0.0 400,597 - -0.7 400,633 + -0.0 400,633 + +0.6 400,633 + +0.2 400,637 + -0.8 400,637 + +0.3 400,637 + -0.2 400,637 + +2.3 400,660 + -0.4 400,757 - CA264_01710 0.22 -0.4 400,785 - CA264_01710 0.26 +0.8 400,849 + CA264_01710 0.36 +0.3 400,849 + CA264_01710 0.36 -0.2 400,925 + CA264_01710 0.48 +1.8 400,992 - CA264_01710 0.58 +0.3 400,992 - CA264_01710 0.58 +0.9 400,992 - CA264_01710 0.58 -0.4 401,013 + CA264_01710 0.62 +0.9 401,015 + CA264_01710 0.62 -0.4 401,016 - CA264_01710 0.62 -0.4 401,016 - CA264_01710 0.62 -1.0 401,018 - CA264_01710 0.62 -0.2 401,068 + CA264_01710 0.70 -3.3 401,068 + CA264_01710 0.70 +0.2 401,069 - CA264_01710 0.70 -0.6 401,069 - CA264_01710 0.70 -0.2 401,069 - CA264_01710 0.70 -0.1 401,074 + CA264_01710 0.71 -0.2 401,074 + CA264_01710 0.71 -0.0 401,074 + CA264_01710 0.71 +0.0 401,126 - CA264_01710 0.79 -1.0 401,126 - CA264_01710 0.79 +1.0 401,133 - +0.8 401,157 + CA264_01710 0.84 +1.0 401,158 - CA264_01710 0.84 -0.7 401,177 + CA264_01710 0.87 -0.1 401,178 - CA264_01710 0.87 -1.3 401,224 + +0.2 401,225 - -0.7 401,225 - +0.5 401,225 - -1.4 401,228 + +0.4 401,368 - -0.2 401,368 - +0.6 401,441 + CA264_01715 0.19 -1.4 401,442 - CA264_01715 0.20 -1.6 401,442 - CA264_01715 0.20 +0.6 401,546 - CA264_01715 0.37 -1.5 401,622 + CA264_01715 0.49 -1.3 401,676 - CA264_01715 0.58 -1.0 401,693 - CA264_01715 0.61 -1.6 402,030 + +0.7 402,030 + +1.3 402,031 - -0.5 402,031 - +0.4 402,091 - CA264_01720 0.13 -2.2 402,241 + CA264_01720 0.42 -1.4 402,289 - CA264_01720 0.51 -0.9 402,298 - CA264_01720 0.53 -2.2 402,323 - CA264_01720 0.57 -1.6 402,325 - CA264_01720 0.58 +0.8 402,341 + CA264_01720 0.61 -1.4 402,343 + CA264_01720 0.61 -1.5 402,343 + CA264_01720 0.61 -0.3 402,343 + CA264_01720 0.61 -1.4 402,344 - CA264_01720 0.61 -0.8 402,346 + CA264_01720 0.62 -2.4 402,346 + CA264_01720 0.62 -1.7 402,352 + CA264_01720 0.63 -0.9 402,353 - CA264_01720 0.63 -1.3 402,462 + CA264_01720 0.84 -3.7 402,463 - CA264_01720 0.84 -1.4 402,519 - -0.5 402,519 - -1.4 402,520 + +0.4 402,520 + -1.0 402,521 - -2.2 402,574 - -1.7 402,579 - -1.3 402,585 - CA264_01725 0.11 -1.5 402,815 - CA264_01725 0.84 -0.5 402,862 + +0.3 402,862 + +0.2 402,880 + -0.3 402,880 + -0.6 402,880 + -1.1 402,880 + -0.3 402,897 + +0.1 402,897 + -0.6 402,897 + +0.1 402,901 + +0.7 402,917 + -0.8 402,917 + +0.3 402,917 + +0.2 402,918 - +0.0 402,918 - -0.2 402,923 + -0.7
Or see this region's nucleotide sequence