Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01335 and CA264_01340 are separated by 81 nucleotides CA264_01340 and CA264_01345 are separated by 14 nucleotides CA264_01345 and CA264_01350 overlap by 23 nucleotides CA264_01350 and CA264_01355 are separated by 28 nucleotides CA264_01355 and CA264_01360 are separated by 104 nucleotides
CA264_01335: CA264_01335 - cytochrome oxidase subunit III, at 318,975 to 319,721
_01335
CA264_01340: CA264_01340 - hypothetical protein, at 319,803 to 320,147
_01340
CA264_01345: CA264_01345 - SCO family protein, at 320,162 to 320,824
_01345
CA264_01350: CA264_01350 - hypothetical protein, at 320,802 to 321,356
_01350
CA264_01355: CA264_01355 - hypothetical protein, at 321,385 to 321,651
_01355
CA264_01360: CA264_01360 - DUF983 domain-containing protein, at 321,756 to 322,034
_01360
Position (kb) 320
321 Strain fitness (log2 ratio) -1
0
1
2 at 319.710 kb on + strand at 319.719 kb on + strand at 319.719 kb on + strand at 319.732 kb on + strand at 319.735 kb on + strand at 319.794 kb on + strand at 320.113 kb on - strand at 320.182 kb on - strand at 320.187 kb on + strand at 320.216 kb on - strand at 320.228 kb on - strand at 320.299 kb on - strand, within CA264_01345 at 320.303 kb on + strand, within CA264_01345 at 320.304 kb on - strand, within CA264_01345 at 320.405 kb on + strand, within CA264_01345 at 320.405 kb on + strand, within CA264_01345 at 320.406 kb on - strand, within CA264_01345 at 320.466 kb on + strand, within CA264_01345 at 320.497 kb on - strand, within CA264_01345 at 320.632 kb on + strand, within CA264_01345 at 320.670 kb on + strand, within CA264_01345 at 320.722 kb on + strand, within CA264_01345 at 320.723 kb on - strand, within CA264_01345 at 320.793 kb on + strand at 321.354 kb on + strand at 321.378 kb on - strand at 321.760 kb on - strand at 321.760 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 319,710 + +0.5 319,719 + -0.3 319,719 + -0.1 319,732 + +1.9 319,735 + -1.3 319,794 + +0.3 320,113 - -1.2 320,182 - +0.3 320,187 + -0.7 320,216 - -0.1 320,228 - -0.2 320,299 - CA264_01345 0.21 +0.0 320,303 + CA264_01345 0.21 -0.2 320,304 - CA264_01345 0.21 +0.0 320,405 + CA264_01345 0.37 +1.1 320,405 + CA264_01345 0.37 +0.1 320,406 - CA264_01345 0.37 -0.1 320,466 + CA264_01345 0.46 +0.3 320,497 - CA264_01345 0.51 +0.3 320,632 + CA264_01345 0.71 +0.8 320,670 + CA264_01345 0.77 -0.4 320,722 + CA264_01345 0.84 -0.1 320,723 - CA264_01345 0.85 +1.8 320,793 + -0.8 321,354 + +0.2 321,378 - -0.2 321,760 - +0.8 321,760 - +1.6
Or see this region's nucleotide sequence